HHsearch results for GI: 254780242 and protein with PDBid: 2zkr_l
>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.5e-34 Score=199.41 Aligned_cols=137 Identities=18% Similarity=0.164 Sum_probs=104.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--C-CCCCCCCCEEEECCCCCCCC-CCCCCEEEEEHHHHHHHHCC
Q ss_conf 87676102031578989857877667642368986--6-44431685301167635546-56552147751120454302
Q gi|254780242|r 12 SCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSV--R-GFEGGQMPLYRRLPKRGFVN-IAGSDFVTISLGLLQAYIDK 87 (151)
Q Consensus 12 ~~~~~kR~GRG~gsg~Gkt~GrG~kGqk~Rsg~~~--~-gfEGGQ~Pl~rrlPKrGF~~-~~~~~~~~iNL~~L~~~i~~ 87 (151)
.++++.|.+|+.|+|+.+ .+|||+||++|+|... + +||++|||+|+++|+++|++ .++.+|.+|||++|+.+++.
T Consensus 6 kK~rk~Rg~r~~G~G~~g-~~rg~~g~~g~~gg~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~~~~~~inL~~L~~~~~~ 84 (148)
T 2zkr_l 6 RKTRKLRGHVSHGHGRIG-KHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKPWTLVSE 84 (148)
T ss_dssp CHHHHTTTTSCSSCCSCS-CC--CCSCSSSTTTTTTTCSSCTTTC------------------CCCCEEETHHHHHHTTT
T ss_pred CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHH
T ss_conf 764757789783899998-9898899998889875887665687876326589768886776417214539999876440
Q ss_pred CCCCCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCCC-CEEEEEEEECHHHHHHHHHCCCEEEEC
Q ss_conf 4555332233555543086254433204630443144-148999982699999999749889989
Q gi|254780242|r 88 DRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLKA-KVVLRVSGASASAVEKVEKLGGQVIVI 151 (151)
Q Consensus 88 ~~~~~~~~Id~~~L~~~gli~~~~~~vKiLg~Gel~~-ki~I~v~~~S~sA~ekIE~aGG~v~ii 151 (151)
...+.....+. +....+.......+|||++||++. +|+|+|++||++|+|+||+|||+|+||
T Consensus 85 ~~~~~~~~~~~--~~~~~~~~~~~g~~KlLg~G~~~kk~i~I~~~~~S~sA~ekIE~aGG~V~lv 147 (148)
T 2zkr_l 85 QTRVNAAKNKT--GVAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLV 147 (148)
T ss_dssp TTSSCTTTTEE--EHHHHSTTCSSSCCEEECCSCCCSSCCEEEESEECHHHHHHHHHTTCEEEEC
T ss_pred CCEEHHHHHHC--CCCCEEEEECCCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHCCCEEEEE
T ss_conf 43102233213--5521001112422687158850462189998713989999999869889995