HHsearch results for GI: 254780242 and protein with PDBid: 3jyw_V
>3jyw_V 60S ribosomal protein L28; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_V
Probab=100.00 E-value=7.8e-34 Score=195.67 Aligned_cols=130 Identities=23% Similarity=0.187 Sum_probs=100.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCEEEECC-----CCCCCC----CCCCCEEEEEHHHHHHHH
Q ss_conf 6102031578989857877667642368986-644431685301167-----635546----565521477511204543
Q gi|254780242|r 16 KKRVARGIGSGTGKTAGRGVKGQKSRSGVSV-RGFEGGQMPLYRRLP-----KRGFVN----IAGSDFVTISLGLLQAYI 85 (151)
Q Consensus 16 ~kR~GRG~gsg~Gkt~GrG~kGqk~Rsg~~~-~gfEGGQ~Pl~rrlP-----KrGF~~----~~~~~~~~iNL~~L~~~i 85 (151)
++|++|| ++|||+||+||++|+|... +|||++|+|+|++.| ++||.+ .++.+|.+|||++|+.++
T Consensus 2 K~rk~RG-----~~t~G~G~~gq~~~~gg~g~~g~~~~~~~~~~~~~~~~~~~~gfr~~~~~~~~~~~~~inl~~L~~~~ 76 (142)
T 3jyw_V 2 KTRKHRG-----HVSAGKGRIGKHRKHPGGGMAGGEHHHRINMDKYHPGYFGKVGMRYFHKQQAHFWKPVLNLDKLWTLI 76 (142)
T ss_dssp CHHHHHT-----TCCTTTCSTTCSTTTTTSSCCCSSCCSSSSCSSCSSSSSCCCSCCCSSSSTTCCCCCCCCHHHHHTTT
T ss_pred CCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHC
T ss_conf 7565538-----96847998989898976899987789887652688775477998788746533064258899998653
Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCCC-CEEEEEEEECHHHHHHHHHCCCEEEEC
Q ss_conf 024555332233555543086254433204630443144-148999982699999999749889989
Q gi|254780242|r 86 DKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLKA-KVVLRVSGASASAVEKVEKLGGQVIVI 151 (151)
Q Consensus 86 ~~~~~~~~~~Id~~~L~~~gli~~~~~~vKiLg~Gel~~-ki~I~v~~~S~sA~ekIE~aGG~v~ii 151 (151)
+...++....++...+.. .+.......+|||++||++. ||+|+|++||++|+|+||+|||+|++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~KlLg~Ge~~k~~i~I~a~~~S~sA~ekIE~aGG~v~~i 142 (142)
T 3jyw_V 77 PEDKRDQYLKSASKETAP-VIDTLAAGYGKILGKGRIPNVPVIVKARFVSKLAEEKIRAAGGVVELI 142 (142)
T ss_dssp TTCCSSBTTTTBCCSTTT-CCSTTTSSCCCCCCCSCCCSCCCCEECSSCCHHHHHHHHHHTCCEECC
T ss_pred CCCCCCHHHHHHHCCCCC-CCCCCCCCEEEEECCCCCCCCCEEEEEEECCHHHHHHHHHCCCEEEEC
T ss_conf 035431346553045542-100112434798337744667589998853989999999839989969