HHSEARCH alignment of GI: 254780242 and SCOP domain: d2gycj1

Alignment
>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=331.09  Aligned_cols=139  Identities=42%  Similarity=0.621  Sum_probs=132.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCEEEECCCCCCCCCCCCCEEEEEHHHHH
Q ss_conf             66888999876761020315789898578776676423689866-44431685301167635546565521477511204
Q gi|254780242|r    4 NEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR-GFEGGQMPLYRRLPKRGFVNIAGSDFVTISLGLLQ   82 (151)
Q Consensus         4 ~~l~~~~g~~~~~kR~GRG~gsg~Gkt~GrG~kGqk~Rsg~~~~-gfEGGQ~Pl~rrlPKrGF~~~~~~~~~~iNL~~L~   82 (151)
                      |||+|+|||+++++|+|||+|||+|||||||||||+||+|+.++ +|||||||||||+||+||+++++..|.++||.+|+
T Consensus         1 n~l~~~~gs~k~~kR~gRG~gsg~Gkt~GrG~kGqk~R~g~~~r~gfEGGQ~Pl~rr~PK~Gf~~~~~~~~~~i~l~~l~   80 (140)
T d2gycj1           1 NTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEIRLSDLA   80 (140)
T ss_dssp             CCSCCSCCSSSCSCCSSSCCCSSSCCSSCSSCCCCSCCSSCSSSCSCCSSCSSSSSSSSSCCCCCCCCCCCCCBCCSSSS
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCEEECCCCCCCEEEEEEEEEEH
T ss_conf             98888999854762666778899898889978988777798978752477666554076030222232126667743201


Q ss_pred             HHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCCEEEEEEEECHHHHHHHHHCCCEEE
Q ss_conf             5430245553322335555430862544332046304431441489999826999999997498899
Q gi|254780242|r   83 AYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVI  149 (151)
Q Consensus        83 ~~i~~~~~~~~~~Id~~~L~~~gli~~~~~~vKiLg~Gel~~ki~I~v~~~S~sA~ekIE~aGG~v~  149 (151)
                      .+       +.++||+++|++++|+......||||+.|||+.||+|+|++||++|+++||+|||+|+
T Consensus        81 ~~-------~~~~i~~~~L~~~gli~~~~~~vKiLg~Gel~~ki~i~~~~~S~sA~~~IE~aGG~Ve  140 (140)
T d2gycj1          81 KV-------EGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIE  140 (140)
T ss_dssp             SS-------SSCSCCSTTSCTTTTCCCSSCCCBCCCSCCCCCCCCCCCSCCCTTTSSSSSSSCCCCC
T ss_pred             HC-------CCCCCCHHHHHHCCEEECCCEEEEEECCCCCCCCEEEEEEEECHHHHHHHHHCCCCCC
T ss_conf             10-------0452027777544755312100178606820577799999848999999998288619


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Escherichia coli [TaxId: 562]