HHSEARCH alignment of GI: 254780242 and SCOP domain: d2j01p1

Alignment
>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=0  Score=324.97  Aligned_cols=137  Identities=38%  Similarity=0.619  Sum_probs=124.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCC-CCCCCCCCEEEECCCCCCCCCC-----CCCEEEEE
Q ss_conf             6888999876761020315789898578776676423689-866-4443168530116763554656-----55214775
Q gi|254780242|r    5 EISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGV-SVR-GFEGGQMPLYRRLPKRGFVNIA-----GSDFVTIS   77 (151)
Q Consensus         5 ~l~~~~g~~~~~kR~GRG~gsg~Gkt~GrG~kGqk~Rsg~-~~~-gfEGGQ~Pl~rrlPKrGF~~~~-----~~~~~~iN   77 (151)
                      ||+|++||+++++|+|||+|||+|||||||||||+||+|. ..+ ||||||||||||||||||+|++     +.+|.+||
T Consensus         1 ~l~~~~gs~k~~kR~GRG~gsg~Gkt~GrG~kGqkaRsG~~~~~~gFEGGQ~Pl~rrlPK~Gf~~~~~~~~~~~~~~~in   80 (146)
T d2j01p1           1 DLRPNPGANKRRKRVGRGPGSGHGKTATRGHKGQKSRSGGLKDPRRFEGGRSTTLMRLPKRGMQGQVPGEIKRPRYQGVN   80 (146)
T ss_dssp             CCSSSCCCSSCCCCCCCCSCSSSSSCTTCSSCCSSSCSSCCCCSSSCCSSSCTTCCSCCCCCSCCCSSCSCCCCCEEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCEECCCHHHHHCCCCCCEEEEEEEHHH
T ss_conf             98889899767616567788898966999898888677988577321068878544065165415552311357752234


Q ss_pred             HHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCCEEEEEEEECHHHHHHHHHCCCEEEEC
Q ss_conf             11204543024555332233555543086254433204630443144148999982699999999749889989
Q gi|254780242|r   78 LGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVIVI  151 (151)
Q Consensus        78 L~~L~~~i~~~~~~~~~~Id~~~L~~~gli~~~~~~vKiLg~Gel~~ki~I~v~~~S~sA~ekIE~aGG~v~ii  151 (151)
                      |++|+.+        +.++|+++|.+++++++.. +||||++|+++ ||+|+|++||++|+|+||+|||+|+||
T Consensus        81 l~~l~~~--------~~~~~~~~l~~~glik~~~-~vKvLg~Ge~k-~i~I~v~~~SksA~ekIEkaGG~v~il  144 (146)
T d2j01p1          81 LKDLARF--------EGEVTPELLVRAGLLKKGY-RLKILGEGEAK-PLKVVAHAFSKSALEKLKAAGGEPVLL  144 (146)
T ss_dssp             TTTTTTS--------CSCCCTTTTTTSSSCSSCC-EEEEECSSCCC-SSCCCCSBCCHHHHHHHHTSCCCCCCC
T ss_pred             HHHHHHC--------CCCHHHHHHHHHCCCCCCC-EEEEECCCCEE-EEEEEEEEECHHHHHHHHHCCCEEEEE
T ss_conf             6666522--------3210168999827454686-68896588567-689998971899999999869989996


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Thermus thermophilus [TaxId: 274]