Query gi|254780242|ref|YP_003064655.1| 50S ribosomal protein L15 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 151
No_of_seqs 152 out of 2062
Neff 6.3
Searched_HMMs 13730
Date Tue May 24 03:44:14 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780242.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2zjri1 c.12.1.1 (I:4-144) Rib 100.0 0 0 331.8 6.3 139 4-151 1-140 (141)
2 d2j01p1 c.12.1.1 (P:5-150) Rib 100.0 0 0 325.0 8.1 137 5-151 1-144 (146)
3 d2gycj1 c.12.1.1 (J:4-143) Rib 100.0 0 0 331.1 0.7 139 4-149 1-140 (140)
4 d1vqol1 c.12.1.1 (L:1-150) Rib 100.0 4.2E-43 0 242.7 11.4 135 12-151 2-143 (150)
5 d1vqoo1 c.12.1.1 (O:1-115) Rib 99.1 2.6E-11 1.9E-15 77.0 5.8 75 55-150 24-98 (115)
6 d1vqoc1 c.22.1.1 (C:1-246) Rib 67.9 0.38 2.8E-05 24.1 -0.6 35 109-143 205-245 (246)
7 d2gycc1 c.22.1.1 (C:1-198) Rib 55.6 3.4 0.00025 19.1 2.4 38 20-58 48-87 (198)
8 d2uubp1 d.27.1.1 (P:1-83) Ribo 43.4 8.3 0.0006 17.1 2.8 45 63-109 36-82 (83)
9 d2qn6b1 d.58.51.1 (B:176-264) 31.4 12 0.00085 16.3 2.0 38 114-151 42-89 (89)
10 d2j01f1 c.22.1.1 (F:1-208) Rib 28.4 19 0.0014 15.3 4.0 37 19-56 52-90 (208)
11 d1m0sa2 d.58.40.1 (A:127-198) 26.0 21 0.0015 15.0 3.3 11 138-148 19-29 (72)
No 1
>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=100.00 E-value=0 Score=331.85 Aligned_cols=139 Identities=46% Similarity=0.710 Sum_probs=131.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCEEEECCCCCCCCCCCCCEEEEEHHHHH
Q ss_conf 66888999876761020315789898578776676423689866-44431685301167635546565521477511204
Q gi|254780242|r 4 NEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR-GFEGGQMPLYRRLPKRGFVNIAGSDFVTISLGLLQ 82 (151)
Q Consensus 4 ~~l~~~~g~~~~~kR~GRG~gsg~Gkt~GrG~kGqk~Rsg~~~~-gfEGGQ~Pl~rrlPKrGF~~~~~~~~~~iNL~~L~ 82 (151)
|||+|+|||+++++|+|||++ |+|||||||||||+||||++++ +|||||||||||||||||+|+ ..+|.+|||+.|+
T Consensus 1 h~L~~~~gs~~~~kR~gRG~g-g~Gkt~GrG~KGqk~RsG~~~~~gfeGGQ~Pl~rrlPKrGf~~~-~~~~~~inl~~l~ 78 (141)
T d2zjri1 1 HDLKPTPGSRKDRKRVGRGPG-GTDKTAGRGHKGQKSRSGAGKGAFFEGGRSRLIARLPKRGFNNV-GTTYEVVKLSQLQ 78 (141)
T ss_dssp CCCCCCSSTTTCCCCSSSCCC-CCCSCSSSCCCCSSSSSCCSCCCSCSCCSSSSTTTSCCCCCCCC-CCCCCEECHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEECCCCCCCCCC-CCEEEEEEHHHHH
T ss_conf 978779999668622567899-88977898888888888989887450166653541774577766-5268888863520
Q ss_pred HHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCCEEEEEEEECHHHHHHHHHCCCEEEEC
Q ss_conf 543024555332233555543086254433204630443144148999982699999999749889989
Q gi|254780242|r 83 AYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVIVI 151 (151)
Q Consensus 83 ~~i~~~~~~~~~~Id~~~L~~~gli~~~~~~vKiLg~Gel~~ki~I~v~~~S~sA~ekIE~aGG~v~ii 151 (151)
.+++ .+||.+.|.+.++|....++||||++|||+.+++|+|++||++|+++||+|||+|+|+
T Consensus 79 ~~~~-------~~i~~~~L~~~~li~~~~~~VKiLg~Gel~~kl~I~v~~~S~sA~~~IE~aGG~V~l~ 140 (141)
T d2zjri1 79 DLED-------TTFDRDTLEAYRLVRRKNRPVKLLASGEISRAVTVHVDAASAAAIKAVEAAGGRVVLP 140 (141)
T ss_dssp TSCC-------CCCCTTTTHHHHHCCCCSSCCEECCCCCCCCCCCCCCSEECHHHHHHHGGGSCCCCCC
T ss_pred CCCC-------CCHHHHHHHHHCEECCCCCCEEECCCCCCCCCEEEEEEEECHHHHHHHHHCCCEEEEE
T ss_conf 0111-------1111344322153324787857915982558778999984999999999879989960
No 2
>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=0 Score=324.97 Aligned_cols=137 Identities=38% Similarity=0.619 Sum_probs=124.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCC-CCCCCCCCEEEECCCCCCCCCC-----CCCEEEEE
Q ss_conf 6888999876761020315789898578776676423689-866-4443168530116763554656-----55214775
Q gi|254780242|r 5 EISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGV-SVR-GFEGGQMPLYRRLPKRGFVNIA-----GSDFVTIS 77 (151)
Q Consensus 5 ~l~~~~g~~~~~kR~GRG~gsg~Gkt~GrG~kGqk~Rsg~-~~~-gfEGGQ~Pl~rrlPKrGF~~~~-----~~~~~~iN 77 (151)
||+|++||+++++|+|||+|||+|||||||||||+||+|. ..+ ||||||||||||||||||+|++ +.+|.+||
T Consensus 1 ~l~~~~gs~k~~kR~GRG~gsg~Gkt~GrG~kGqkaRsG~~~~~~gFEGGQ~Pl~rrlPK~Gf~~~~~~~~~~~~~~~in 80 (146)
T d2j01p1 1 DLRPNPGANKRRKRVGRGPGSGHGKTATRGHKGQKSRSGGLKDPRRFEGGRSTTLMRLPKRGMQGQVPGEIKRPRYQGVN 80 (146)
T ss_dssp CCSSSCCCSSCCCCCCCCSCSSSSSCTTCSSCCSSSCSSCCCCSSSCCSSSCTTCCSCCCCCSCCCSSCSCCCCCEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCEECCCHHHHHCCCCCCEEEEEEEHHH
T ss_conf 98889899767616567788898966999898888677988577321068878544065165415552311357752234
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCCEEEEEEEECHHHHHHHHHCCCEEEEC
Q ss_conf 11204543024555332233555543086254433204630443144148999982699999999749889989
Q gi|254780242|r 78 LGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVIVI 151 (151)
Q Consensus 78 L~~L~~~i~~~~~~~~~~Id~~~L~~~gli~~~~~~vKiLg~Gel~~ki~I~v~~~S~sA~ekIE~aGG~v~ii 151 (151)
|++|+.+ +.++|+++|.+++++++.. +||||++|+++ ||+|+|++||++|+|+||+|||+|+||
T Consensus 81 l~~l~~~--------~~~~~~~~l~~~glik~~~-~vKvLg~Ge~k-~i~I~v~~~SksA~ekIEkaGG~v~il 144 (146)
T d2j01p1 81 LKDLARF--------EGEVTPELLVRAGLLKKGY-RLKILGEGEAK-PLKVVAHAFSKSALEKLKAAGGEPVLL 144 (146)
T ss_dssp TTTTTTS--------CSCCCTTTTTTSSSCSSCC-EEEEECSSCCC-SSCCCCSBCCHHHHHHHHTSCCCCCCC
T ss_pred HHHHHHC--------CCCHHHHHHHHHCCCCCCC-EEEEECCCCEE-EEEEEEEEECHHHHHHHHHCCCEEEEE
T ss_conf 6666522--------3210168999827454686-68896588567-689998971899999999869989996
No 3
>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=331.09 Aligned_cols=139 Identities=42% Similarity=0.621 Sum_probs=132.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCEEEECCCCCCCCCCCCCEEEEEHHHHH
Q ss_conf 66888999876761020315789898578776676423689866-44431685301167635546565521477511204
Q gi|254780242|r 4 NEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR-GFEGGQMPLYRRLPKRGFVNIAGSDFVTISLGLLQ 82 (151)
Q Consensus 4 ~~l~~~~g~~~~~kR~GRG~gsg~Gkt~GrG~kGqk~Rsg~~~~-gfEGGQ~Pl~rrlPKrGF~~~~~~~~~~iNL~~L~ 82 (151)
|||+|+|||+++++|+|||+|||+|||||||||||+||+|+.++ +|||||||||||+||+||+++++..|.++||.+|+
T Consensus 1 n~l~~~~gs~k~~kR~gRG~gsg~Gkt~GrG~kGqk~R~g~~~r~gfEGGQ~Pl~rr~PK~Gf~~~~~~~~~~i~l~~l~ 80 (140)
T d2gycj1 1 NTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEIRLSDLA 80 (140)
T ss_dssp CCSCCSCCSSSCSCCSSSCCCSSSCCSSCSSCCCCSCCSSCSSSCSCCSSCSSSSSSSSSCCCCCCCCCCCCCBCCSSSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCEEECCCCCCCEEEEEEEEEEH
T ss_conf 98888999854762666778899898889978988777798978752477666554076030222232126667743201
Q ss_pred HHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCCEEEEEEEECHHHHHHHHHCCCEEE
Q ss_conf 5430245553322335555430862544332046304431441489999826999999997498899
Q gi|254780242|r 83 AYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVI 149 (151)
Q Consensus 83 ~~i~~~~~~~~~~Id~~~L~~~gli~~~~~~vKiLg~Gel~~ki~I~v~~~S~sA~ekIE~aGG~v~ 149 (151)
.+ +.++||+++|++++|+......||||+.|||+.||+|+|++||++|+++||+|||+|+
T Consensus 81 ~~-------~~~~i~~~~L~~~gli~~~~~~vKiLg~Gel~~ki~i~~~~~S~sA~~~IE~aGG~Ve 140 (140)
T d2gycj1 81 KV-------EGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIE 140 (140)
T ss_dssp SS-------SSCSCCSTTSCTTTTCCCSSCCCBCCCSCCCCCCCCCCCSCCCTTTSSSSSSSCCCCC
T ss_pred HC-------CCCCCCHHHHHHCCEEECCCEEEEEECCCCCCCCEEEEEEEECHHHHHHHHHCCCCCC
T ss_conf 10-------0452027777544755312100178606820577799999848999999998288619
No 4
>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=100.00 E-value=4.2e-43 Score=242.73 Aligned_cols=135 Identities=22% Similarity=0.262 Sum_probs=117.3
Q ss_pred CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC--CCCEEEEEHHHHHHHHCCC
Q ss_conf 8767610203157898985-787766764236898664443168530116763554656--5521477511204543024
Q gi|254780242|r 12 SCKVKKRVARGIGSGTGKT-AGRGVKGQKSRSGVSVRGFEGGQMPLYRRLPKRGFVNIA--GSDFVTISLGLLQAYIDKD 88 (151)
Q Consensus 12 ~~~~~kR~GRG~gsg~Gkt-~GrG~kGqk~Rsg~~~~gfEGGQ~Pl~rrlPKrGF~~~~--~~~~~~iNL~~L~~~i~~~ 88 (151)
|+++++|+|||+|||+|+| +|||||||+||||+..++||| |++||||||++++ ..+|.++||..|+.+++..
T Consensus 2 skk~k~R~gRg~G~G~~~~~~GrG~KGqk~rsG~~~~~f~g-----~~~lpK~g~~~~~~~~~~~~~inl~~L~~~~~~~ 76 (150)
T d1vqol1 2 SKKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKHEFHN-----HEPLGKSGFKRPQKVQEEAATIDVREIDENVTLL 76 (150)
T ss_dssp CTGGGCTTCSSTTCSSTTSSSSGGGGTSSTTTTTTTTTCTT-----SCCSSCCCCCCCGGGCCCEEEEEHHHHHHTTTTC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHH
T ss_conf 96366567767578999887989888888766676688767-----7447721765555421156430288799888652
Q ss_pred CC----CCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCCEEEEEEEECHHHHHHHHHCCCEEEEC
Q ss_conf 55----5332233555543086254433204630443144148999982699999999749889989
Q gi|254780242|r 89 RL----DCSSEIDASVLVASGLVRRSQRGIRILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVIVI 151 (151)
Q Consensus 89 ~~----~~~~~Id~~~L~~~gli~~~~~~vKiLg~Gel~~ki~I~v~~~S~sA~ekIE~aGG~v~ii 151 (151)
.. +....++..+|.+..++.....+|||||.|+|+.||+|+|++||++|+|+||+|||+|+|+
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vKlLG~G~l~~~l~Ika~~~S~sA~ekIe~aGG~v~l~ 143 (150)
T d1vqol1 77 AADDVAEVEDGGFRVDVRDVVEEADDADYVKVLGAGQVRHELTLIADDFSEGAREKVEGAGGSVELT 143 (150)
T ss_dssp TTSCCCC-----CEEEGGGTCTTCSSSSEEEEECCSCCCSCCEEEESEECHHHHHHHHHTTCEEEEC
T ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCHHHHHHHHHCCCEEEEE
T ss_conf 0244212233312677786344334565369961783176779999981999999999859989996
No 5
>d1vqoo1 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=99.14 E-value=2.6e-11 Score=77.04 Aligned_cols=75 Identities=17% Similarity=0.341 Sum_probs=56.6
Q ss_pred CEEEECCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCCEEEEEEEEC
Q ss_conf 53011676355465655214775112045430245553322335555430862544332046304431441489999826
Q gi|254780242|r 55 PLYRRLPKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLKAKVVLRVSGAS 134 (151)
Q Consensus 55 Pl~rrlPKrGF~~~~~~~~~~iNL~~L~~~i~~~~~~~~~~Id~~~L~~~gli~~~~~~vKiLg~Gel~~ki~I~v~~~S 134 (151)
|+++.+-+|= ..++..+.+|||++|+.+... ++++ + .+.||||+|+++.+++|.|+.||
T Consensus 24 ~iwk~va~rL--~~~rr~r~~VnLski~~~~k~-----~~~v---------v-----vpgKVLg~G~l~~k~~V~A~~fS 82 (115)
T d1vqoo1 24 AVWGDVAERL--EKPRRTHAEVNLGRIERYAQE-----DETV---------V-----VPGKVLGSGVLQKDVTVAAVDFS 82 (115)
T ss_dssp SHHHHHHHHH--HSCGGGSEEEEHHHHHHHCCT-----TSEE---------E-----EEEEEECCSCCCSCCEEEEEEEC
T ss_pred HHHHHHHHHH--HCCCCCCCCCCHHHHHHHCCC-----CCEE---------E-----EEEEEECCCEECCCEEEEEEECC
T ss_conf 8999999998--435446887569999974658-----9989---------9-----96689636587578899985117
Q ss_pred HHHHHHHHHCCCEEEE
Q ss_conf 9999999974988998
Q gi|254780242|r 135 ASAVEKVEKLGGQVIV 150 (151)
Q Consensus 135 ~sA~ekIE~aGG~v~i 150 (151)
++|+++||+|||.+++
T Consensus 83 ~sA~~kI~~aGg~iti 98 (115)
T d1vqoo1 83 GTAETKIDQVGEAVSL 98 (115)
T ss_dssp HHHHHHHHHHSEEEEH
T ss_pred HHHHHHHHHCCCEEEH
T ss_conf 8999999980988988
No 6
>d1vqoc1 c.22.1.1 (C:1-246) Ribosomal protein L4 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=67.91 E-value=0.38 Score=24.09 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=20.0
Q ss_pred CCCCCEEEECCCCCCCCEEE------EEEEECHHHHHHHHH
Q ss_conf 44332046304431441489------999826999999997
Q gi|254780242|r 109 RSQRGIRILSDGDLKAKVVL------RVSGASASAVEKVEK 143 (151)
Q Consensus 109 ~~~~~vKiLg~Gel~~ki~I------~v~~~S~sA~ekIE~ 143 (151)
.+...|+++..-+++.-=-+ .---+|++|.++||+
T Consensus 205 rNip~v~v~~~~~lNv~dll~~~~l~r~vV~T~~Al~~lee 245 (246)
T d1vqoc1 205 RNLAGADVATASEVNTEDLAPGGAPGRLTVFTESALAEVAE 245 (246)
T ss_dssp TTSTTCEEEETTTCCHHHHSGGGCCCCCEEEEHHHHHHHTT
T ss_pred CCCCCCEEEECCCCCHHHCCCCCCCCCEEEEEHHHHHHHHC
T ss_conf 58999779867984199901668778609982999999854
No 7
>d2gycc1 c.22.1.1 (C:1-198) Ribosomal protein L4 {Escherichia coli [TaxId: 562]}
Probab=55.56 E-value=3.4 Score=19.13 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=24.5
Q ss_pred CCCCCCCCCCCCCCCCCCC-CCCCCCCC-CCCCCCCCCEEE
Q ss_conf 0315789898578776676-42368986-644431685301
Q gi|254780242|r 20 ARGIGSGTGKTAGRGVKGQ-KSRSGVSV-RGFEGGQMPLYR 58 (151)
Q Consensus 20 GRG~gsg~Gkt~GrG~kGq-k~Rsg~~~-~gfEGGQ~Pl~r 58 (151)
.|+.-+|.|+---+ +||- .||.|... |-|-||-..+=-
T Consensus 48 tRseV~g~gkKp~~-QKGTGrAR~Gs~rsP~~~gGGva~GP 87 (198)
T d2gycc1 48 TRAEVTGSGKKPWR-QKGTGRARSGSIKSPIWRSGGVTFAA 87 (198)
T ss_dssp SCCCCCCSCSSCSC-CCCCCCBTTBCCSCSSSSSCCCSSCS
T ss_pred EEHHCCCCCCCCCC-CCCCCCCCCCCCCHHHCCCCCEECCC
T ss_conf 20110577667534-46788787767600000357232476
No 8
>d2uubp1 d.27.1.1 (P:1-83) Ribosomal protein S16 {Thermus thermophilus [TaxId: 274]}
Probab=43.45 E-value=8.3 Score=17.12 Aligned_cols=45 Identities=11% Similarity=0.287 Sum_probs=28.6
Q ss_pred CCCCCCCCC--CEEEEEHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 355465655--21477511204543024555332233555543086254
Q gi|254780242|r 63 RGFVNIAGS--DFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRR 109 (151)
Q Consensus 63 rGF~~~~~~--~~~~iNL~~L~~~i~~~~~~~~~~Id~~~L~~~gli~~ 109 (151)
-||.|+... +...+|.+.+..|+..+-. ++++| ...|..+|++.+
T Consensus 36 lG~YnP~~~~~~~i~l~~eRi~~Wl~~GAq-pS~tV-~~ll~~~gi~~~ 82 (83)
T d2uubp1 36 IGYYDPRKTTPDWLKVDVERARYWLSVGAQ-PTDTA-RRLLRQAGVFRQ 82 (83)
T ss_dssp EEEECTTCCSSCCEEECHHHHHHHHHHTCE-ECHHH-HHHHHHTTSSCC
T ss_pred EEEECCCCCCCCEEEECHHHHHHHHHCCCC-CCHHH-HHHHHHCCCCCC
T ss_conf 657879989874488779999999997797-78999-999998389768
No 9
>d2qn6b1 d.58.51.1 (B:176-264) eIF-2-alpha, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=31.39 E-value=12 Score=16.33 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=24.8
Q ss_pred EEEECCCCCCCCEEEEEEE----------ECHHHHHHHHHCCCEEEEC
Q ss_conf 0463044314414899998----------2699999999749889989
Q gi|254780242|r 114 IRILSDGDLKAKVVLRVSG----------ASASAVEKVEKLGGQVIVI 151 (151)
Q Consensus 114 vKiLg~Gel~~ki~I~v~~----------~S~sA~ekIE~aGG~v~ii 151 (151)
++|--.|-...-+++.+.. +.+.+.+.||+.||++.+|
T Consensus 42 i~i~~igaP~Yri~v~a~D~k~ae~~l~~a~~~i~~~ik~~gg~~~vv 89 (89)
T d2qn6b1 42 IKIYTIGAPRYRVDVVGTNPKEASEALNQIISNLIKIGKEENVDISVV 89 (89)
T ss_dssp EEEEESSTTEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHTTEEEEEC
T ss_pred EEEEEECCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCEEEEC
T ss_conf 899996698089999807899999999999999999999969889969
No 10
>d2j01f1 c.22.1.1 (F:1-208) Ribosomal protein L4 {Thermus thermophilus [TaxId: 274]}
Probab=28.42 E-value=19 Score=15.28 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCCCCCCCCC-CCCCCCCCC-CCCCCCCCCE
Q ss_conf 2031578989857877667-642368986-6444316853
Q gi|254780242|r 19 VARGIGSGTGKTAGRGVKG-QKSRSGVSV-RGFEGGQMPL 56 (151)
Q Consensus 19 ~GRG~gsg~Gkt~GrG~kG-qk~Rsg~~~-~gfEGGQ~Pl 56 (151)
.+|+.-+|.|+-.-+ +|| -.||.|... +.|-||....
T Consensus 52 k~R~ev~g~gkK~~~-QKGtGrAR~Gs~rsp~~~gGg~~~ 90 (208)
T d2j01f1 52 KTRGEVAYSGRKIWP-QKHTGRARHGDIGAPIFVGGGVVF 90 (208)
T ss_dssp CCTTTSCCCCCCSSC-SSSSSSCCCCCTTSTTSTTSCCSS
T ss_pred CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCEEC
T ss_conf 865400475666676-554543345554213236662004
No 11
>d1m0sa2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase (RpiA), lid domain {Haemophilus influenzae [TaxId: 727]}
Probab=25.96 E-value=21 Score=15.03 Aligned_cols=11 Identities=36% Similarity=0.525 Sum_probs=3.8
Q ss_pred HHHHHHCCCEE
Q ss_conf 99999749889
Q gi|254780242|r 138 VEKVEKLGGQV 148 (151)
Q Consensus 138 ~ekIE~aGG~v 148 (151)
..++++.|+++
T Consensus 19 ~~~l~~lg~~~ 29 (72)
T d1m0sa2 19 GRKLAALGGSP 29 (72)
T ss_dssp HHHHHHTTCEE
T ss_pred HHHHHHHCCCC
T ss_conf 99999938986
Done!