PSIBLAST alignment of GI: 254780242 and protein with PDB id: 1pnu
>gi|34811563|pdb|1PNU|J Chain J, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 141
>gi|34811616|pdb|1PNY|J Chain J, Crystal Structure Of The Wild Type Ribosome From E. Coli, 50s Subunit Of 70s Ribosome. This File, 1pny, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit Is In The Pdb File 1pnx. Length = 141
Score = 97.3 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 55/129 (42%), Positives = 72/129 (55%), Gaps = 10/129 (7%)
Query: 4 NEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSG-VSVRGFEGGQMPLYRRLPK 62
+++ GS K +KRV RG G GT KTAGRG KGQKSRSG FEGG+ L RLPK
Sbjct: 1 HDLKPTPGSRKDRKRVGRGPG-GTDKTAGRGHKGQKSRSGAGKGAFFEGGRSRLIARLPK 59
Query: 63 RGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDL 122
RGF N+ G+ + + L LQ D + D L A LVRR R +++L+ G++
Sbjct: 60 RGFNNV-GTTYEVVKLSQLQDLED-------TTFDRDTLEAYRLVRRKNRPVKLLASGEI 111
Query: 123 KAKVVLRVS 131
V + V
Sbjct: 112 SRAVTVHVD 120