RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780242|ref|YP_003064655.1| 50S ribosomal protein L15
[Candidatus Liberibacter asiaticus str. psy62]
         (151 letters)



>gnl|CDD|180155 PRK05592, rplO, 50S ribosomal protein L15; Reviewed.
          Length = 146

 Score =  190 bits (486), Expect = 1e-49
 Identities = 76/152 (50%), Positives = 101/152 (66%), Gaps = 7/152 (4%)

Query: 1   MKLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR-GFEGGQMPLYRR 59
           MKLNE+    GS K +KRV RGIGSG GKTAGRG KGQK+RSG  VR GFEGGQMPLYRR
Sbjct: 1   MKLNELKPAPGSRKARKRVGRGIGSGLGKTAGRGHKGQKARSGGGVRPGFEGGQMPLYRR 60

Query: 60  LPKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSD 119
           LPKRGF NI   ++  ++LG L  + +        E+    L A+GL+R++ +G+++L +
Sbjct: 61  LPKRGFTNIFRKEYAVVNLGDLNKFEEGT------EVTLEALKAAGLIRKNIKGVKVLGN 114

Query: 120 GDLKAKVVLRVSGASASAVEKVEKLGGQVIVI 151
           G+L  K+ ++    S SA E +E  GG+V  I
Sbjct: 115 GELTKKLTVKAHKFSKSAKEAIEAAGGKVEEI 146


>gnl|CDD|162189 TIGR01071, rplO_bact, ribosomal protein L15, bacterial/organelle. 
          Length = 145

 Score =  134 bits (339), Expect = 1e-32
 Identities = 66/149 (44%), Positives = 87/149 (58%), Gaps = 7/149 (4%)

Query: 2   KLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR-GFEGGQMPLYRRL 60
           KLNE+   KG+ K +KRV RGIGSG GKT+GRG KGQK+RSG  VR GFEGGQMPLYRRL
Sbjct: 1   KLNELKPAKGAKKRRKRVGRGIGSGLGKTSGRGHKGQKARSGGKVRRGFEGGQMPLYRRL 60

Query: 61  PKRGFVNIAG-SDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSD 119
           PKRGF N     ++  ++LG L              +    L   GL+ +  + +++L +
Sbjct: 61  PKRGFSNKRFKKEYAEVNLGKLAKLFPN-----GEVVTLETLKEKGLITKKIKFVKVLGN 115

Query: 120 GDLKAKVVLRVSGASASAVEKVEKLGGQV 148
           G L   + ++    S SA   +E  GG V
Sbjct: 116 GKLTKPLTVKAHRVSKSAKAAIEAAGGSV 144


>gnl|CDD|180560 PRK06419, rpl15p, 50S ribosomal protein L15P; Reviewed.
          Length = 148

 Score = 39.8 bits (94), Expect = 3e-04
 Identities = 34/153 (22%), Positives = 53/153 (34%), Gaps = 27/153 (17%)

Query: 13  CKVKK-RVARGIGSGT-GKTAGRGVKGQKSRSGVSVRGFEGGQMPLYRRLPKRGFVN--I 68
            K +K R +R  G GT     G G +G +  +G     +            K GF     
Sbjct: 6   KKSRKLRGSRTHGGGTHKNHRGAGSRGGRGMAGRHKHKWTWVVKYGPDWYGKHGFKRPPK 65

Query: 69  AGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRI----------LS 118
              +  TI++G L    D              L A G        I +          L 
Sbjct: 66  LIKEVSTINVGELDELADL-------------LKAEGKAEEEDGKIVVDLTELGYDKVLG 112

Query: 119 DGDLKAKVVLRVSGASASAVEKVEKLGGQVIVI 151
            G +   +V++    S  A+EK+E  GG+V++ 
Sbjct: 113 GGKVTRPLVIKADAFSEKAIEKIEAAGGEVVLS 145


>gnl|CDD|179705 PRK04005, PRK04005, 50S ribosomal protein L18e; Provisional.
          Length = 111

 Score = 28.3 bits (64), Expect = 0.80
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 116 ILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVIVI 151
           +L  G L  KV +     S +A EK+E+ GG+ + I
Sbjct: 59  VLGSGKLDHKVTVAALSFSETAKEKIEEAGGKALTI 94


>gnl|CDD|179044 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.
          Length = 491

 Score = 27.0 bits (61), Expect = 1.9
 Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 20/81 (24%)

Query: 52  GQMPLYRRLPKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDAS------VLVASG 105
           G++ L R + K  F  +          G +Q Y+ KD +   +           ++   G
Sbjct: 61  GRVMLKRVMGKASFATLQDGS------GRIQLYVSKDDVGEEALEAFKKLDLGDIIGVEG 114

Query: 106 LVRRSQRG--------IRILS 118
            + +++ G        + +L+
Sbjct: 115 TLFKTKTGELSVKATELTLLT 135


>gnl|CDD|171993 PRK13347, PRK13347, coproporphyrinogen III oxidase; Provisional.
          Length = 453

 Score = 26.5 bits (59), Expect = 3.0
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 4/35 (11%)

Query: 100 VLVASGLVRRSQRGIRILSDGDLKAKVVLRVSGAS 134
            L A GLV     GIR+  +G    + ++R   A+
Sbjct: 407 PLAADGLVTIDGGGIRVTPEG----RPLIRAVAAA 437


>gnl|CDD|184034 PRK13405, bchH, magnesium chelatase subunit H; Provisional.
          Length = 1209

 Score = 26.6 bits (59), Expect = 3.0
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 7/30 (23%)

Query: 33  RGVKGQKSRSGVSVRGFEGGQMPLYRRLPK 62
           RG K +   SG        GQM + RRLPK
Sbjct: 135 RGKKKEGGSSG-------EGQMAMLRRLPK 157


>gnl|CDD|185477 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
           Provisional.
          Length = 418

 Score = 26.2 bits (58), Expect = 4.1
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 12/54 (22%)

Query: 62  KRGFVNIAGSDFVTISLGLLQ------AYIDKDRLDCSSEIDASVLVAS--GLV 107
           K GF+    S FV  S   L+      AYID D +   + +D SV VA+  GLV
Sbjct: 244 KLGFM----SAFVKASTIALKKMPIVNAYIDGDEIVYRNYVDISVAVATPTGLV 293


>gnl|CDD|181834 PRK09414, PRK09414, glutamate dehydrogenase; Provisional.
          Length = 445

 Score = 25.1 bits (56), Expect = 7.2
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 4/32 (12%)

Query: 121 DLKAKVVLRVSGA---SASAVEKVEKLGGQVI 149
             + K V+ VSG+   +  A+EK ++LG +V+
Sbjct: 229 SFEGKRVV-VSGSGNVAIYAIEKAQQLGAKVV 259


>gnl|CDD|179496 PRK02901, PRK02901, O-succinylbenzoate synthase; Provisional.
          Length = 327

 Score = 25.3 bits (56), Expect = 7.4
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 4/43 (9%)

Query: 107 VRRSQRGIRILSDGDL-KAKVVLRVSGASAS--AVEKVEKLGG 146
           +RR + G+ I +D  + +A+  LRV+ A A+  AV KV  LGG
Sbjct: 179 LRR-RVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGG 220


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.317    0.137    0.372 

Gapped
Lambda     K      H
   0.267   0.0683    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,370,962
Number of extensions: 146059
Number of successful extensions: 293
Number of sequences better than 10.0: 1
Number of HSP's gapped: 289
Number of HSP's successfully gapped: 17
Length of query: 151
Length of database: 5,994,473
Length adjustment: 85
Effective length of query: 66
Effective length of database: 4,157,793
Effective search space: 274414338
Effective search space used: 274414338
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.3 bits)