RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780242|ref|YP_003064655.1| 50S ribosomal protein L15
[Candidatus Liberibacter asiaticus str. psy62]
(151 letters)
>3i1n_L 50S ribosomal protein L15; ribosome structure, protein-RNA
complex, acetylation, ribonucleoprotein, ribosomal
protein, RNA-binding, rRNA- binding, methylation; 3.19A
{Escherichia coli k-12} PDB: 1p85_J 1p86_J 1vs8_L 2aw4_L
2awb_L 1vs6_L 2i2v_L 2j28_L 2i2t_L* 2qao_L* 2qba_L*
2qbc_L* 2qbe_L 2qbg_L 2qbi_L* 2qbk_L* 2qov_L 2qox_L
2qoz_L* 2qp1_L* ... (L:)
Length = 144
Score = 128 bits (324), Expect = 2e-31
Identities = 61/149 (40%), Positives = 82/149 (55%), Gaps = 8/149 (5%)
Query: 1 MKLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR-GFEGGQMPLYRR 59
M+LN +S +GS K KR+ RGIGSG GKT GRG KGQKSRSG VR GFEGGQMPLYRR
Sbjct: 1 MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRR 60
Query: 60 LPKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSD 119
LPK GF + + I L L +D + L A+ ++ +++
Sbjct: 61 LPKFGFTSRKAAITAEIRLSDLAKVEGG-------VVDLNTLKAANIIGIQIEFAKVILA 113
Query: 120 GDLKAKVVLRVSGASASAVEKVEKLGGQV 148
G++ V +R + A +E GG++
Sbjct: 114 GEVTTPVTVRGLRVTKGARAAIEAAGGKI 142
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Pisum sativum} (N:)
Length = 257
Score = 127 bits (319), Expect = 1e-30
Identities = 58/156 (37%), Positives = 88/156 (56%), Gaps = 5/156 (3%)
Query: 1 MKLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR-GFEGGQMPLYRR 59
+L+ + GS K KR RGI +G G + G G++GQKSRSG + GFEGGQMPLYRR
Sbjct: 65 FRLDNLGPQPGSRKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMRGFEGGQMPLYRR 124
Query: 60 LPK----RGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIR 115
LPK G ++ +V ++L ++ +D + S E + V + R + ++
Sbjct: 125 LPKLRGIAGGMHAGLPKYVNVNLTDIENAGFQDGEEVSLETLKAKRVINPSGRERKLPLK 184
Query: 116 ILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVIVI 151
IL+DG+L K+ ++ S SA EK+E G +IV+
Sbjct: 185 ILADGELSKKLTIKAGAFSTSAKEKLEYAGCSLIVL 220
>2j01_P 50S ribosomal protein L15; ribosome, tRNA, paromomycin,
mRNA, translation; 2.8A {Thermus thermophilus} (P:)
Length = 150
Score = 121 bits (305), Expect = 4e-29
Identities = 54/153 (35%), Positives = 82/153 (53%), Gaps = 7/153 (4%)
Query: 1 MKLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSV--RGFEGGQMPLYR 58
MKL+++ + G+ K +KRV RG GSG GKTA RG KGQKSRSG R FEGG+
Sbjct: 1 MKLSDLRPNPGANKRRKRVGRGPGSGHGKTATRGHKGQKSRSGGLKDPRRFEGGRSTTLM 60
Query: 59 RLPKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILS 118
RLPKRG + + E+ +LV +GL+++ ++IL
Sbjct: 61 RLPKRGMQGQVPGEIKRPRYQGVNLKDLARFEG---EVTPELLVRAGLLKK-GYRLKILG 116
Query: 119 DGDLKAKVVLRVSGASASAVEKVEKLGGQVIVI 151
+G+ K + + S SA+EK++ GG+ +++
Sbjct: 117 EGEAK-PLKVVAHAFSKSALEKLKAAGGEPVLL 148
>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal
subunit, ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} (I:)
Length = 156
Score = 115 bits (290), Expect = 2e-27
Identities = 64/152 (42%), Positives = 86/152 (56%), Gaps = 10/152 (6%)
Query: 1 MKLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR-GFEGGQMPLYRR 59
MKL+++ GS K +KRV RG G KTAGRG KGQKSRSG FEGG+ L R
Sbjct: 1 MKLHDLKPTPGSRKDRKRVGRGPGGT-DKTAGRGHKGQKSRSGAGKGAFFEGGRSRLIAR 59
Query: 60 LPKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSD 119
LPKRGF N+ + + + L LQ D D L A LVRR R +++L+
Sbjct: 60 LPKRGFNNVG-TTYEVVKLSQLQDLEDT-------TFDRDTLEAYRLVRRKNRPVKLLAS 111
Query: 120 GDLKAKVVLRVSGASASAVEKVEKLGGQVIVI 151
G++ V + V ASA+A++ VE GG+V++
Sbjct: 112 GEISRAVTVHVDAASAAAIKAVEAAGGRVVLP 143
>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein
complex, RNA-RNA complex, protein-RNA complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} (L:)
Length = 165
Score = 109 bits (273), Expect = 2e-25
Identities = 27/147 (18%), Positives = 52/147 (35%), Gaps = 12/147 (8%)
Query: 12 SCKVKKRVARGIGSGTGKTA-GRGVKGQKSRSGVSVRGFEGGQMPLYRRLPKRGFVNIAG 70
S K ++R +R G G+ K G G +G + +G + + + L K GF
Sbjct: 3 SKKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAG-----RDKHEFHNHEPLGKSGFKRPQK 57
Query: 71 SDFVTISLGLLQAYIDKD------RLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLKA 124
++ + + + + + +++L G ++
Sbjct: 58 VQEEAATIDVREIDENVTLLAADDVAEVEDGGFRVDVRDVVEEADDADYVKVLGAGQVRH 117
Query: 125 KVVLRVSGASASAVEKVEKLGGQVIVI 151
++ L S A EKVE GG V +
Sbjct: 118 ELTLIADDFSEGAREKVEGAGGSVELT 144
>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S
ribosomal subunit, ribosomal protein/RNA complex; 8.70A
{Canis familiaris} (l:)
Length = 148
Score = 92.7 bits (230), Expect = 2e-20
Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 15/150 (10%)
Query: 12 SCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR-GFEGGQMPLYRRLPKRG------ 64
S K R RG S GR K +K G G ++ + P
Sbjct: 3 SRLRKTRKLRGHVSHGH---GRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMK 59
Query: 65 --FVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDL 122
+ S T++L + + + VA + ++L G L
Sbjct: 60 HYHLKRNQSFCPTVNLDKPWTLVSEQTRV--NAAKNKTGVAPIIDVVRSGYYKVLGKGKL 117
Query: 123 -KAKVVLRVSGASASAVEKVEKLGGQVIVI 151
K V+++ S A EK++ +GG +++
Sbjct: 118 PKQPVIVKAKFFSRRAEEKIKSVGGACVLV 147
>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1
protein, flexible fitting; 8.90A {Thermomyces
lanuginosus} PDB: 1s1i_O (O:)
Length = 121
Score = 74.1 bits (182), Expect = 8e-15
Identities = 12/104 (11%), Positives = 32/104 (30%), Gaps = 15/104 (14%)
Query: 48 GFEGGQMPLYRRLPKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLV 107
P + + K F++ + +S+ + + ++ + + + +
Sbjct: 16 LARRTDAPFNKVVLKALFLSK--INRPPVSVSRIARALKQEGAANKTVVVVGTVTDDARI 73
Query: 108 RRSQRGIRILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVIVI 151
K + +A A K+ K GG+ I +
Sbjct: 74 FEF-------------PKTTVAALRFTAGARAKIVKAGGECITL 104
>3jyw_V 60S ribosomal protein L28; eukaryotic ribosome, RACK1
protein, flexible fitting; 8.90A {Thermomyces
lanuginosus} PDB: 1s1i_V (V:49-142)
Length = 94
Score = 69.4 bits (170), Expect = 2e-13
Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 3/95 (3%)
Query: 59 RLPKRGFVNIAGS-DFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRIL 117
++ R F ++L L I +D+ D + + +IL
Sbjct: 1 KVGMRYFHKQQAHFWKPVLNLDKLWTLIPEDKRDQYLKSASKETAPVIDTLA-AGYGKIL 59
Query: 118 SDGDL-KAKVVLRVSGASASAVEKVEKLGGQVIVI 151
G + V+++ S A EK+ GG V +I
Sbjct: 60 GKGRIPNVPVIVKARFVSKLAEEKIRAAGGVVELI 94
>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein
complex, RNA-RNA complex, protein-RNA complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} (O:39-116)
Length = 78
Score = 41.5 bits (98), Expect = 6e-05
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 113 GIRILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVIVI 151
++L G L+ V + S +A K++++G V +
Sbjct: 24 PGKVLGSGVLQKDVTVAAVDFSGTAETKIDQVGEAVSLE 62
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductase;
oxidoreductase; 1.99A {Streptomyces coelicolor A3} (A:)
Length = 253
Score = 31.2 bits (68), Expect = 0.066
Identities = 7/47 (14%), Positives = 14/47 (29%), Gaps = 5/47 (10%)
Query: 108 RRSQRGIRILSDGDLKAKVVLRVSGAS----ASAVEKVEKLGGQVIV 150
L ++ VL V+G + + G +V +
Sbjct: 5 HHHHHHSSGLVPRSHMSRSVL-VTGGNRGIGLAIARAFADAGDKVAI 50
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding motif, oxidoreductase; HET: NAP;
1.75A {Drosophila melanogaster} (A:)
Length = 267
Score = 30.9 bits (67), Expect = 0.079
Identities = 3/27 (11%), Positives = 7/27 (25%), Gaps = 1/27 (3%)
Query: 108 RRSQRGIRILSDGDLKAKVVLRVSGAS 134
L +L ++G +
Sbjct: 5 HHHHHHSSGLVPRGSHXNSIL-ITGCN 30
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease
mutation, kelch repeat, neurodegeneration,
phosphoprotein, polymorphism, UBL conjugation; 2.80A
{Homo sapiens} PDB: 3hve_B (A:170-256)
Length = 87
Score = 27.5 bits (61), Expect = 0.81
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 72 DFVTISLGLLQAYIDKDRLDCSSEID 97
+F+ +S L+ I ++L+ +E
Sbjct: 2 EFLELSPQKLKEVISLEKLNVGNERY 27
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
(A:77-170,A:247-357)
Length = 205
Score = 26.6 bits (58), Expect = 1.4
Identities = 15/32 (46%), Positives = 16/32 (50%)
Query: 82 QAYIDKDRLDCSSEIDASVLVASGLVRRSQRG 113
+AY RLD S VL ASGL R Q G
Sbjct: 100 RAYRQFPRLDLLSGAQTPVLRASGLTLRPQNG 131
>2o16_A Acetoin utilization protein ACUB, putative; structural
genomics, unknown function, PSI-2, protein structure
initiative; 1.90A {Vibrio cholerae} (A:110-160)
Length = 51
Score = 26.4 bits (58), Expect = 2.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 68 IAGSDFVTISLGLLQAYIDKDRLDCSSEID 97
I SDFVTI++ LL+ + + + E +
Sbjct: 15 ITDSDFVTIAINLLELQEESEPDELDEEQE 44
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
translation termination, ATP-binding, cytoplasm,
hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
(A:1-326)
Length = 326
Score = 25.9 bits (56), Expect = 2.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 25 SGTGKTAG 32
SGTGKTA
Sbjct: 167 SGTGKTAA 174
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A,
SGC, structural genomics consortium, kelch repeat,
secreted, protein binding; 2.60A {Homo sapiens}
(A:178-234)
Length = 57
Score = 25.8 bits (57), Expect = 2.4
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 72 DFVTISLGLLQAYIDKDRLDCSSEID 97
+F T+ L++ ++ + SE
Sbjct: 2 EFYTLPFHLIRDWLSDLEITVDSEEV 27
>2aua_A Hypothetical protein; dimer, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; 2.35A {Bacillus cereus} (A:)
Length = 224
Score = 25.6 bits (56), Expect = 3.0
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 56 LYRRLPKRGFVNIAGSDFVTIS 77
LY +R +N G D + I
Sbjct: 57 LYHFFFEREQLNANGEDGIQIL 78
>2wwb_H 60S ribosomal protein L4-B; ribosome, protein EXIT tunnel,
cotranslational protein translocation, protein
conducting channel; 6.48A {Triticum aestivum} PDB:
2wwa_H 2ww9_H 1s1i_D (H:139-362)
Length = 224
Score = 24.0 bits (52), Expect = 8.8
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 9/67 (13%)
Query: 17 KRVARGIGSGTGKTAGRGVKGQKSRSGVSVRGFEGGQMPLYRRLPKRGFVNIAGSDFVTI 76
+V + GK R + + R + V + G + + N+ G + +
Sbjct: 41 LKVLKSKKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIV--------KALRNVPGVETANV 92
Query: 77 S-LGLLQ 82
+ L LLQ
Sbjct: 93 ASLNLLQ 99
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.317 0.137 0.372
Gapped
Lambda K H
0.267 0.0647 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,065,022
Number of extensions: 44555
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 24
Length of query: 151
Length of database: 4,956,049
Length adjustment: 81
Effective length of query: 70
Effective length of database: 2,217,844
Effective search space: 155249080
Effective search space used: 155249080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)