RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780242|ref|YP_003064655.1| 50S ribosomal protein L15 [Candidatus Liberibacter asiaticus str. psy62] (151 letters) >3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Pisum sativum} Length = 257 Score = 132 bits (332), Expect = 4e-32 Identities = 55/156 (35%), Positives = 82/156 (52%), Gaps = 5/156 (3%) Query: 1 MKLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR-GFEGGQMPLYRR 59 +L+ + GS K KR RGI +G G + G G++GQKSRSG + GFEGGQMPLYRR Sbjct: 65 FRLDNLGPQPGSRKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMRGFEGGQMPLYRR 124 Query: 60 LPKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLV----RRSQRGIR 115 LPK + + + + I+ E+ L A ++ R + ++ Sbjct: 125 LPKLRGIAGGMHAGLPKYVNVNLTDIENAGFQDGEEVSLETLKAKRVINPSGRERKLPLK 184 Query: 116 ILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVIVI 151 IL+DG+L K+ ++ S SA EK+E G +IV+ Sbjct: 185 ILADGELSKKLTIKAGAFSTSAKEKLEYAGCSLIVL 220 >3ofq_L 50S ribosomal protein L15; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 3fik_L 2wwq_L 3ofr_L* 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L 2awb_L 1vt2_L 2i2v_L 2j28_L 2i2t_L* 2qao_L* 2qba_L* 2qbc_L* 2qbe_L 2qbg_L 2qbi_L* ... Length = 143 Score = 128 bits (322), Expect = 6e-31 Identities = 60/148 (40%), Positives = 81/148 (54%), Gaps = 8/148 (5%) Query: 2 KLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR-GFEGGQMPLYRRL 60 +LN +S +GS K KR+ RGIGSG GKT GRG KGQKSRSG VR GFEGGQMPLYRRL Sbjct: 1 RLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRL 60 Query: 61 PKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDG 120 PK GF + + I L L +D + L A+ ++ +++ G Sbjct: 61 PKFGFTSRKAAITAEIRLSDLAKV-------EGGVVDLNTLKAANIIGIQIEFAKVILAG 113 Query: 121 DLKAKVVLRVSGASASAVEKVEKLGGQV 148 ++ V +R + A +E GG++ Sbjct: 114 EVTTPVTVRGLRVTKGARAAIEAAGGKI 141 >2j01_P 50S ribosomal protein L15; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: c.12.1.1 PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 3d5b_P 3d5d_P 3f1f_P 3f1h_P ... Length = 150 Score = 116 bits (292), Expect = 2e-27 Identities = 59/153 (38%), Positives = 85/153 (55%), Gaps = 7/153 (4%) Query: 1 MKLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSV--RGFEGGQMPLYR 58 MKL+++ + G+ K +KRV RG GSG GKTA RG KGQKSRSG R FEGG+ Sbjct: 1 MKLSDLRPNPGANKRRKRVGRGPGSGHGKTATRGHKGQKSRSGGLKDPRRFEGGRSTTLM 60 Query: 59 RLPKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILS 118 RLPKRG I Q KD E+ +LV +GL+++ R ++IL Sbjct: 61 RLPKRGMQGQV---PGEIKRPRYQGVNLKDLARFEGEVTPELLVRAGLLKKGYR-LKILG 116 Query: 119 DGDLKAKVVLRVSGASASAVEKVEKLGGQVIVI 151 +G+ K + + S SA+EK++ GG+ +++ Sbjct: 117 EGEAK-PLKVVAHAFSKSALEKLKAAGGEPVLL 148 >3i1n_L 50S ribosomal protein L15; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_J 1p86_J 1vs8_L 2aw4_L 2awb_L 1vs6_L 2i2v_L 2j28_L 2i2t_L* 2qao_L* 2qba_L* 2qbc_L* 2qbe_L 2qbg_L 2qbi_L* 2qbk_L* 2qov_L 2qox_L 2qoz_L* 2qp1_L* ... Length = 144 Score = 110 bits (276), Expect = 1e-25 Identities = 61/149 (40%), Positives = 82/149 (55%), Gaps = 8/149 (5%) Query: 1 MKLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR-GFEGGQMPLYRR 59 M+LN +S +GS K KR+ RGIGSG GKT GRG KGQKSRSG VR GFEGGQMPLYRR Sbjct: 1 MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRR 60 Query: 60 LPKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSD 119 LPK GF + + I L L +D + L A+ ++ +++ Sbjct: 61 LPKFGFTSRKAAITAEIRLSDLAKV-------EGGVVDLNTLKAANIIGIQIEFAKVILA 113 Query: 120 GDLKAKVVLRVSGASASAVEKVEKLGGQV 148 G++ V +R + A +E GG++ Sbjct: 114 GEVTTPVTVRGLRVTKGARAAIEAAGGKI 142 >2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M Length = 156 Score = 110 bits (276), Expect = 1e-25 Identities = 66/152 (43%), Positives = 88/152 (57%), Gaps = 10/152 (6%) Query: 1 MKLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR-GFEGGQMPLYRR 59 MKL+++ GS K +KRV RG G GT KTAGRG KGQKSRSG FEGG+ L R Sbjct: 1 MKLHDLKPTPGSRKDRKRVGRGPG-GTDKTAGRGHKGQKSRSGAGKGAFFEGGRSRLIAR 59 Query: 60 LPKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSD 119 LPKRGF N G+ + + L LQ + D L A LVRR R +++L+ Sbjct: 60 LPKRGF-NNVGTTYEVVKLSQLQDL-------EDTTFDRDTLEAYRLVRRKNRPVKLLAS 111 Query: 120 GDLKAKVVLRVSGASASAVEKVEKLGGQVIVI 151 G++ V + V ASA+A++ VE GG+V++ Sbjct: 112 GEISRAVTVHVDAASAAAIKAVEAAGGRVVLP 143 >1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ... Length = 165 Score = 98.2 bits (244), Expect = 7e-22 Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 2/140 (1%) Query: 14 KVKKRVARGIGSGTGKT-AGRGVKGQKSRSGVSVRGFEGGQMPLYRRLPKRGFVNIAGSD 72 K ++R +R G G+ K G G +G + +G F + + V + Sbjct: 5 KKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKHEFHNHEPLGKSGFKRPQKVQEEAAT 64 Query: 73 FVTISLG-LLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLKAKVVLRVS 131 + + D + + +++L G ++ ++ L Sbjct: 65 IDVREIDENVTLLAADDVAEVEDGGFRVDVRDVVEEADDADYVKVLGAGQVRHELTLIAD 124 Query: 132 GASASAVEKVEKLGGQVIVI 151 S A EKVE GG V + Sbjct: 125 DFSEGAREKVEGAGGSVELT 144 >3jyw_V 60S ribosomal protein L28; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_V Length = 142 Score = 85.7 bits (212), Expect = 4e-18 Identities = 30/139 (21%), Positives = 47/139 (33%), Gaps = 4/139 (2%) Query: 16 KKRVARGIGSGT-GKTAGRGVKGQKSRSGVSVRGFEGGQMPLYRRLPKRGF-VNIAGSDF 73 K R G G GK G + + ++ R F A Sbjct: 5 KHRGHVSAGKGRIGKHRKHPGGGMAGGEHHHRINMDKYHPGYFGKVGMRYFHKQQAHFWK 64 Query: 74 VTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDL-KAKVVLRVSG 132 ++L L I +D+ D AS A + + +IL G + V+++ Sbjct: 65 PVLNLDKLWTLIPEDKRD-QYLKSASKETAPVIDTLAAGYGKILGKGRIPNVPVIVKARF 123 Query: 133 ASASAVEKVEKLGGQVIVI 151 S A EK+ GG V +I Sbjct: 124 VSKLAEEKIRAAGGVVELI 142 >2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 148 Score = 73.9 bits (181), Expect = 2e-14 Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 19/152 (12%) Query: 12 SCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSV----------RGFEGGQMPLYRRLP 61 S K R RG + G G G+ + F+ + ++ Sbjct: 3 SRLRKTRKLRG-----HVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVG 57 Query: 62 KRGFVNIAGSDFV-TISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDG 120 + + F T++L + + + VA + ++L G Sbjct: 58 MKHYHLKRNQSFCPTVNLDKPWTLVSEQTRV--NAAKNKTGVAPIIDVVRSGYYKVLGKG 115 Query: 121 DL-KAKVVLRVSGASASAVEKVEKLGGQVIVI 151 L K V+++ S A EK++ +GG +++ Sbjct: 116 KLPKQPVIVKAKFFSRRAEEKIKSVGGACVLV 147 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 33.8 bits (77), Expect = 0.019 Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 29/112 (25%) Query: 29 KTAGRGVKGQKSRSGVSVRGFEGGQ--MPLYRRLPKRGFVNIAGSDFVTISLGLLQAYID 86 A + ++ VS F +P+Y GSD +S + + +D Sbjct: 433 VPASDLINKDLVKNNVS---FNAKDIQIPVYD--------TFDGSDLRVLSGSISERIVD 481 Query: 87 ---KDRLD--CSSEIDAS-VLV-----ASG---LVRRSQ--RGIRILSDGDL 122 + + +++ A+ +L ASG L R++ G+R++ G L Sbjct: 482 CIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTL 533 Score = 27.6 bits (61), Expect = 1.1 Identities = 26/157 (16%), Positives = 39/157 (24%), Gaps = 76/157 (48%) Query: 12 SCKVKKRVARGIGSGTGKTAG------RGVKG--QKSRSGVSVRGFEGGQMPLYRRLPKR 63 + K+ G T G +G G Q G+ Sbjct: 252 TAKL-----------LGFTPGELRSYLKGATGHSQ----GLVTA---------------- 280 Query: 64 GFVNIAGSD----FVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGI----- 114 V IA +D F +A +VL G+ R Sbjct: 281 --VAIAETDSWESFFVSVR---KA--------------ITVLFFIGV--RCYEAYPNTSL 319 Query: 115 --RILSD----GDLKAKVVLRVSGASASAVEK-VEKL 144 IL D + +L +S + V+ V K Sbjct: 320 PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT 356 Score = 25.3 bits (55), Expect = 5.3 Identities = 8/22 (36%), Positives = 12/22 (54%) Query: 26 GTGKTAGRGVKGQKSRSGVSVR 47 G G +G GV +++ G VR Sbjct: 505 GPGGASGLGVLTHRNKDGTGVR 526 >1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_O* 1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O* 1vql_O* 1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O* 1yij_O* 1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ... Length = 116 Score = 32.4 bits (74), Expect = 0.050 Identities = 9/33 (27%), Positives = 17/33 (51%) Query: 116 ILSDGDLKAKVVLRVSGASASAVEKVEKLGGQV 148 +L G L+ V + S +A K++++G V Sbjct: 65 VLGSGVLQKDVTVAAVDFSGTAETKIDQVGEAV 97 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 29.4 bits (65), Expect = 0.34 Identities = 13/45 (28%), Positives = 22/45 (48%) Query: 104 SGLVRRSQRGIRILSDGDLKAKVVLRVSGASASAVEKVEKLGGQV 148 +G + GI+I+ DL K+ + + G A A +K+G V Sbjct: 1175 NGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSV 1219 >3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 Score = 28.5 bits (63), Expect = 0.68 Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 1/34 (2%) Query: 65 FVNIAGSD-FVTISLGLLQAYIDKDRLDCSSEID 97 F + + F T+ L++ ++ + SE Sbjct: 171 FHKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEV 204 >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Length = 585 Score = 28.2 bits (62), Expect = 0.74 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 9/58 (15%) Query: 62 KRGFVNIAGSDFVTI--SLGLLQAYIDKDRLDCSSEIDA----SVLVASGLVRRSQRG 113 +R ++ F+ + G++Q + D DR D + +G VR Sbjct: 27 RRDLGSLI---FIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEK 81 >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Length = 434 Score = 28.0 bits (61), Expect = 0.86 Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 20/83 (24%) Query: 37 GQKSRSGVSVRGFEGGQMPLYRRLPKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEI 96 G+K V + G+ + R+ K+ F+ I S G++QA + K+ + + Sbjct: 16 GKK----VRLAGW----VYTNMRVGKKIFLWIRDST------GIVQAVVAKNVVGEETFE 61 Query: 97 DA------SVLVASGLVRRSQRG 113 A S ++ G+V+ +R Sbjct: 62 KAKKLGRESSVIVEGIVKADERA 84 >1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1 Length = 315 Score = 27.9 bits (61), Expect = 0.99 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 18/64 (28%) Query: 103 ASGLVRRSQRGIRILSDGDLKAKVVLRVSGA---------------SASAVEKVEKLGGQ 147 +SGLV RG + GD K ++ + +AS V+ +E G + Sbjct: 11 SSGLV---PRGSHMRPHGDTAKKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGAR 67 Query: 148 VIVI 151 V+ + Sbjct: 68 VVPV 71 >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Length = 438 Score = 27.7 bits (61), Expect = 1.0 Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 8/49 (16%) Query: 73 FVTI--SLGLLQAYIDKDRLDCS-----SEIDA-SVLVASGLVRRSQRG 113 F+ I G++Q K ++D ++ + V+ G+V + + Sbjct: 36 FLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTPKA 84 >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} Length = 508 Score = 27.4 bits (60), Expect = 1.4 Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 38/149 (25%) Query: 25 SGTGKTAGRGVKGQKSRSGVSVRGFEGGQMPLYRRLPKRGFVNIAGSDFVTISLG----L 80 SGTGKTA + SR SV + + R L ++ D VT +G + Sbjct: 167 SGTGKTAAFALT-MLSRVDASVPKPQAICLAPSRELARQIM------DVVT-EMGKYTEV 218 Query: 81 LQAYIDKDRLDCSSEIDASVLVAS-----GLVRRSQ---RGIRI--------------LS 118 A+ KD + ++IDA +++ + L++R Q R I++ L Sbjct: 219 KTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLG 278 Query: 119 DGDLKAKVVL----RVSGASASAVEKVEK 143 D ++ K +L ++ SA+ E+VEK Sbjct: 279 DQSMRIKHLLPRNTQIVLFSATFSERVEK 307 >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} Length = 405 Score = 26.9 bits (59), Expect = 1.9 Identities = 15/32 (46%), Positives = 16/32 (50%) Query: 82 QAYIDKDRLDCSSEIDASVLVASGLVRRSQRG 113 +AY RLD S VL ASGL R Q G Sbjct: 252 RAYRQFPRLDLLSGAQTPVLRASGLTLRPQNG 283 >2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C* Length = 210 Score = 25.5 bits (55), Expect = 5.1 Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 1/45 (2%) Query: 102 VASGLVRRSQRGIRILSDGDLKAKVVLRVSGASASAVEKVEKLGG 146 + + + S G L + ++ LR + + A + G Sbjct: 19 LDTVMDAASVAGRVELREIAFTTQISLRCAPGTQ-AHAALAAATG 62 >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initiative; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Length = 450 Score = 25.4 bits (55), Expect = 5.7 Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Query: 68 IAGSDFV--TISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRIL 117 + G+DFV +G L+A +R+ + G + + R I ++ Sbjct: 81 LDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVI 132 >3g63_A Pfluding; subatomic resolution, phosphate binding, DING protein, hydrogen ATOM, phosphate binding protein; 0.88A {Pseudomonas fluorescens SBW25} PDB: 3g62_A 2q9t_A 2v3q_A 2cap_A Length = 381 Score = 24.9 bits (53), Expect = 8.1 Identities = 8/35 (22%), Positives = 11/35 (31%) Query: 38 QKSRSGVSVRGFEGGQMPLYRRLPKRGFVNIAGSD 72 SG F ++ V+ AGSD Sbjct: 29 IGVGSGNGKAAFLNNDYTKFQAGVTNKNVHWAGSD 63 >1zup_A Hypothetical protein TM1739; structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; 2.20A {Thermotoga maritima} SCOP: c.55.3.11 Length = 315 Score = 24.9 bits (54), Expect = 8.4 Identities = 12/47 (25%), Positives = 17/47 (36%) Query: 102 VASGLVRRSQRGIRILSDGDLKAKVVLRVSGASASAVEKVEKLGGQV 148 + G V + G K V RV G S S E+ + G + Sbjct: 83 LCVGAVIWDREGGTKTLFSPDKPPVKERVLGFSQSFQEEGYEEVGGI 129 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.317 0.137 0.372 Gapped Lambda K H 0.267 0.0581 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,230,276 Number of extensions: 54061 Number of successful extensions: 168 Number of sequences better than 10.0: 1 Number of HSP's gapped: 144 Number of HSP's successfully gapped: 25 Length of query: 151 Length of database: 5,693,230 Length adjustment: 84 Effective length of query: 67 Effective length of database: 3,656,734 Effective search space: 245001178 Effective search space used: 245001178 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 52 (24.1 bits)