RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780242|ref|YP_003064655.1| 50S ribosomal protein L15
[Candidatus Liberibacter asiaticus str. psy62]
         (151 letters)



>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast
           ribosome, ribonucleoprotein particle, macromolecular
           complex; 9.40A {Pisum sativum}
          Length = 257

 Score =  132 bits (332), Expect = 4e-32
 Identities = 55/156 (35%), Positives = 82/156 (52%), Gaps = 5/156 (3%)

Query: 1   MKLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR-GFEGGQMPLYRR 59
            +L+ +    GS K  KR  RGI +G G + G G++GQKSRSG  +  GFEGGQMPLYRR
Sbjct: 65  FRLDNLGPQPGSRKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMRGFEGGQMPLYRR 124

Query: 60  LPKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLV----RRSQRGIR 115
           LPK   +       +   + +    I+        E+    L A  ++    R  +  ++
Sbjct: 125 LPKLRGIAGGMHAGLPKYVNVNLTDIENAGFQDGEEVSLETLKAKRVINPSGRERKLPLK 184

Query: 116 ILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVIVI 151
           IL+DG+L  K+ ++    S SA EK+E  G  +IV+
Sbjct: 185 ILADGELSKKLTIKAGAFSTSAKEKLEYAGCSLIVL 220


>3ofq_L 50S ribosomal protein L15; protein biosynthesis, ribosomes, RNA,
           tRNA, transfer, antibi EXIT, peptidyl, ribosomal
           subunit, large; 3.10A {Escherichia coli} PDB: 3fik_L
           2wwq_L 3ofr_L* 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L
           2awb_L 1vt2_L 2i2v_L 2j28_L 2i2t_L* 2qao_L* 2qba_L*
           2qbc_L* 2qbe_L 2qbg_L 2qbi_L* ...
          Length = 143

 Score =  128 bits (322), Expect = 6e-31
 Identities = 60/148 (40%), Positives = 81/148 (54%), Gaps = 8/148 (5%)

Query: 2   KLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR-GFEGGQMPLYRRL 60
           +LN +S  +GS K  KR+ RGIGSG GKT GRG KGQKSRSG  VR GFEGGQMPLYRRL
Sbjct: 1   RLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRL 60

Query: 61  PKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDG 120
           PK GF +   +    I L  L              +D + L A+ ++       +++  G
Sbjct: 61  PKFGFTSRKAAITAEIRLSDLAKV-------EGGVVDLNTLKAANIIGIQIEFAKVILAG 113

Query: 121 DLKAKVVLRVSGASASAVEKVEKLGGQV 148
           ++   V +R    +  A   +E  GG++
Sbjct: 114 EVTTPVTVRGLRVTKGARAAIEAAGGKI 141


>2j01_P 50S ribosomal protein L15; ribosome, tRNA, paromomycin, mRNA,
           translation; 2.8A {Thermus thermophilus} SCOP: c.12.1.1
           PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P
           2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P
           2wh4_P 3d5b_P 3d5d_P 3f1f_P 3f1h_P ...
          Length = 150

 Score =  116 bits (292), Expect = 2e-27
 Identities = 59/153 (38%), Positives = 85/153 (55%), Gaps = 7/153 (4%)

Query: 1   MKLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSV--RGFEGGQMPLYR 58
           MKL+++  + G+ K +KRV RG GSG GKTA RG KGQKSRSG     R FEGG+     
Sbjct: 1   MKLSDLRPNPGANKRRKRVGRGPGSGHGKTATRGHKGQKSRSGGLKDPRRFEGGRSTTLM 60

Query: 59  RLPKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILS 118
           RLPKRG           I     Q    KD      E+   +LV +GL+++  R ++IL 
Sbjct: 61  RLPKRGMQGQV---PGEIKRPRYQGVNLKDLARFEGEVTPELLVRAGLLKKGYR-LKILG 116

Query: 119 DGDLKAKVVLRVSGASASAVEKVEKLGGQVIVI 151
           +G+ K  + +     S SA+EK++  GG+ +++
Sbjct: 117 EGEAK-PLKVVAHAFSKSALEKLKAAGGEPVLL 148


>3i1n_L 50S ribosomal protein L15; ribosome structure, protein-RNA complex,
           acetylation, ribonucleoprotein, ribosomal protein,
           RNA-binding, rRNA- binding, methylation; 3.19A
           {Escherichia coli k-12} PDB: 1p85_J 1p86_J 1vs8_L 2aw4_L
           2awb_L 1vs6_L 2i2v_L 2j28_L 2i2t_L* 2qao_L* 2qba_L*
           2qbc_L* 2qbe_L 2qbg_L 2qbi_L* 2qbk_L* 2qov_L 2qox_L
           2qoz_L* 2qp1_L* ...
          Length = 144

 Score =  110 bits (276), Expect = 1e-25
 Identities = 61/149 (40%), Positives = 82/149 (55%), Gaps = 8/149 (5%)

Query: 1   MKLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR-GFEGGQMPLYRR 59
           M+LN +S  +GS K  KR+ RGIGSG GKT GRG KGQKSRSG  VR GFEGGQMPLYRR
Sbjct: 1   MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRR 60

Query: 60  LPKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSD 119
           LPK GF +   +    I L  L              +D + L A+ ++       +++  
Sbjct: 61  LPKFGFTSRKAAITAEIRLSDLAKV-------EGGVVDLNTLKAANIIGIQIEFAKVILA 113

Query: 120 GDLKAKVVLRVSGASASAVEKVEKLGGQV 148
           G++   V +R    +  A   +E  GG++
Sbjct: 114 GEVTTPVTVRGLRVTKGARAAIEAAGGKI 142


>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit,
           ribonucleoprotein, RNA-binding, rRNA-binding,
           tRNA-binding, methylation; 2.91A {Deinococcus
           radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J*
           1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 1pnu_J
           1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M
          Length = 156

 Score =  110 bits (276), Expect = 1e-25
 Identities = 66/152 (43%), Positives = 88/152 (57%), Gaps = 10/152 (6%)

Query: 1   MKLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR-GFEGGQMPLYRR 59
           MKL+++    GS K +KRV RG G GT KTAGRG KGQKSRSG      FEGG+  L  R
Sbjct: 1   MKLHDLKPTPGSRKDRKRVGRGPG-GTDKTAGRGHKGQKSRSGAGKGAFFEGGRSRLIAR 59

Query: 60  LPKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSD 119
           LPKRGF N  G+ +  + L  LQ           +  D   L A  LVRR  R +++L+ 
Sbjct: 60  LPKRGF-NNVGTTYEVVKLSQLQDL-------EDTTFDRDTLEAYRLVRRKNRPVKLLAS 111

Query: 120 GDLKAKVVLRVSGASASAVEKVEKLGGQVIVI 151
           G++   V + V  ASA+A++ VE  GG+V++ 
Sbjct: 112 GEISRAVTVHVDAASAAAIKAVEAAGGRVVLP 143


>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex,
           RNA-RNA complex, protein-RNA complex, peptidyl
           transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
           2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB:
           1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L*
           1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L*
           1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ...
          Length = 165

 Score = 98.2 bits (244), Expect = 7e-22
 Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 2/140 (1%)

Query: 14  KVKKRVARGIGSGTGKT-AGRGVKGQKSRSGVSVRGFEGGQMPLYRRLPKRGFVNIAGSD 72
           K ++R +R  G G+ K   G G +G +  +G     F   +        +   V    + 
Sbjct: 5   KKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKHEFHNHEPLGKSGFKRPQKVQEEAAT 64

Query: 73  FVTISLG-LLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLKAKVVLRVS 131
                +   +      D  +         +            +++L  G ++ ++ L   
Sbjct: 65  IDVREIDENVTLLAADDVAEVEDGGFRVDVRDVVEEADDADYVKVLGAGQVRHELTLIAD 124

Query: 132 GASASAVEKVEKLGGQVIVI 151
             S  A EKVE  GG V + 
Sbjct: 125 DFSEGAREKVEGAGGSVELT 144


>3jyw_V 60S ribosomal protein L28; eukaryotic ribosome, RACK1 protein,
           flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
           1s1i_V
          Length = 142

 Score = 85.7 bits (212), Expect = 4e-18
 Identities = 30/139 (21%), Positives = 47/139 (33%), Gaps = 4/139 (2%)

Query: 16  KKRVARGIGSGT-GKTAGRGVKGQKSRSGVSVRGFEGGQMPLYRRLPKRGF-VNIAGSDF 73
           K R     G G  GK       G            +      + ++  R F    A    
Sbjct: 5   KHRGHVSAGKGRIGKHRKHPGGGMAGGEHHHRINMDKYHPGYFGKVGMRYFHKQQAHFWK 64

Query: 74  VTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDL-KAKVVLRVSG 132
             ++L  L   I +D+ D      AS   A  +   +    +IL  G +    V+++   
Sbjct: 65  PVLNLDKLWTLIPEDKRD-QYLKSASKETAPVIDTLAAGYGKILGKGRIPNVPVIVKARF 123

Query: 133 ASASAVEKVEKLGGQVIVI 151
            S  A EK+   GG V +I
Sbjct: 124 VSKLAEEKIRAAGGVVELI 142


>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal
           subunit, ribosomal protein/RNA complex; 8.70A {Canis
           familiaris}
          Length = 148

 Score = 73.9 bits (181), Expect = 2e-14
 Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 19/152 (12%)

Query: 12  SCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSV----------RGFEGGQMPLYRRLP 61
           S   K R  RG       + G G  G+  +                 F+      + ++ 
Sbjct: 3   SRLRKTRKLRG-----HVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVG 57

Query: 62  KRGFVNIAGSDFV-TISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDG 120
            + +       F  T++L      + +      +       VA  +        ++L  G
Sbjct: 58  MKHYHLKRNQSFCPTVNLDKPWTLVSEQTRV--NAAKNKTGVAPIIDVVRSGYYKVLGKG 115

Query: 121 DL-KAKVVLRVSGASASAVEKVEKLGGQVIVI 151
            L K  V+++    S  A EK++ +GG  +++
Sbjct: 116 KLPKQPVIVKAKFFSRRAEEKIKSVGGACVLV 147


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.8 bits (77), Expect = 0.019
 Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 29/112 (25%)

Query: 29  KTAGRGVKGQKSRSGVSVRGFEGGQ--MPLYRRLPKRGFVNIAGSDFVTISLGLLQAYID 86
             A   +     ++ VS   F      +P+Y            GSD   +S  + +  +D
Sbjct: 433 VPASDLINKDLVKNNVS---FNAKDIQIPVYD--------TFDGSDLRVLSGSISERIVD 481

Query: 87  ---KDRLD--CSSEIDAS-VLV-----ASG---LVRRSQ--RGIRILSDGDL 122
              +  +    +++  A+ +L      ASG   L  R++   G+R++  G L
Sbjct: 482 CIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTL 533



 Score = 27.6 bits (61), Expect = 1.1
 Identities = 26/157 (16%), Positives = 39/157 (24%), Gaps = 76/157 (48%)

Query: 12  SCKVKKRVARGIGSGTGKTAG------RGVKG--QKSRSGVSVRGFEGGQMPLYRRLPKR 63
           + K+            G T G      +G  G  Q    G+                   
Sbjct: 252 TAKL-----------LGFTPGELRSYLKGATGHSQ----GLVTA---------------- 280

Query: 64  GFVNIAGSD----FVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGI----- 114
             V IA +D    F        +A               +VL   G+  R          
Sbjct: 281 --VAIAETDSWESFFVSVR---KA--------------ITVLFFIGV--RCYEAYPNTSL 319

Query: 115 --RILSD----GDLKAKVVLRVSGASASAVEK-VEKL 144
              IL D     +     +L +S  +   V+  V K 
Sbjct: 320 PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT 356



 Score = 25.3 bits (55), Expect = 5.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 26  GTGKTAGRGVKGQKSRSGVSVR 47
           G G  +G GV   +++ G  VR
Sbjct: 505 GPGGASGLGVLTHRNKDGTGVR 526


>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex,
           RNA-RNA complex, protein-RNA complex, peptidyl
           transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
           2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB:
           1vq4_O* 1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O*
           1vql_O* 1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O*
           1yij_O* 1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ...
          Length = 116

 Score = 32.4 bits (74), Expect = 0.050
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 116 ILSDGDLKAKVVLRVSGASASAVEKVEKLGGQV 148
           +L  G L+  V +     S +A  K++++G  V
Sbjct: 65  VLGSGVLQKDVTVAAVDFSGTAETKIDQVGEAV 97


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl
            reductase, beta-ketoacyl synthase, dehydratase; 4.00A
            {Saccharomyces cerevisiae}
          Length = 1688

 Score = 29.4 bits (65), Expect = 0.34
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 104  SGLVRRSQRGIRILSDGDLKAKVVLRVSGASASAVEKVEKLGGQV 148
            +G +     GI+I+   DL  K+ + + G  A A    +K+G  V
Sbjct: 1175 NGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSV 1219


>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
           structural genomics consortium, kelch repeat, secreted,
           protein binding; 2.60A {Homo sapiens}
          Length = 279

 Score = 28.5 bits (63), Expect = 0.68
 Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 1/34 (2%)

Query: 65  FVNIAGSD-FVTISLGLLQAYIDKDRLDCSSEID 97
           F  +   + F T+   L++ ++    +   SE  
Sbjct: 171 FHKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEV 204


>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex; HET: 4SU H2U QUO G7M
           5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1
           d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
          Length = 585

 Score = 28.2 bits (62), Expect = 0.74
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 9/58 (15%)

Query: 62  KRGFVNIAGSDFVTI--SLGLLQAYIDKDRLDCSSEIDA----SVLVASGLVRRSQRG 113
           +R   ++    F+ +    G++Q + D DR D             +  +G VR     
Sbjct: 27  RRDLGSLI---FIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEK 81


>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
           structural genomics/proteomics initiative, RSGI,
           structural genomics; HET: 4AD; 1.45A {Pyrococcus
           horikoshii} PDB: 1x55_A* 1x56_A
          Length = 434

 Score = 28.0 bits (61), Expect = 0.86
 Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 20/83 (24%)

Query: 37  GQKSRSGVSVRGFEGGQMPLYRRLPKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEI 96
           G+K    V + G+    +    R+ K+ F+ I  S       G++QA + K+ +   +  
Sbjct: 16  GKK----VRLAGW----VYTNMRVGKKIFLWIRDST------GIVQAVVAKNVVGEETFE 61

Query: 97  DA------SVLVASGLVRRSQRG 113
            A      S ++  G+V+  +R 
Sbjct: 62  KAKKLGRESSVIVEGIVKADERA 84


>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
          Length = 315

 Score = 27.9 bits (61), Expect = 0.99
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 18/64 (28%)

Query: 103 ASGLVRRSQRGIRILSDGDLKAKVVLRVSGA---------------SASAVEKVEKLGGQ 147
           +SGLV    RG  +   GD   K ++ +                  +AS V+ +E  G +
Sbjct: 11  SSGLV---PRGSHMRPHGDTAKKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGAR 67

Query: 148 VIVI 151
           V+ +
Sbjct: 68  VVPV 71


>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO
           ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A*
           3nen_A 1b8a_A*
          Length = 438

 Score = 27.7 bits (61), Expect = 1.0
 Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 8/49 (16%)

Query: 73  FVTI--SLGLLQAYIDKDRLDCS-----SEIDA-SVLVASGLVRRSQRG 113
           F+ I    G++Q    K ++D        ++ +  V+   G+V  + + 
Sbjct: 36  FLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTPKA 84


>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
           termination, ATP-binding, cytoplasm, hydrolase,
           membrane; 2.80A {Schizosaccharomyces pombe}
          Length = 508

 Score = 27.4 bits (60), Expect = 1.4
 Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 38/149 (25%)

Query: 25  SGTGKTAGRGVKGQKSRSGVSVRGFEGGQMPLYRRLPKRGFVNIAGSDFVTISLG----L 80
           SGTGKTA   +    SR   SV   +   +   R L ++        D VT  +G    +
Sbjct: 167 SGTGKTAAFALT-MLSRVDASVPKPQAICLAPSRELARQIM------DVVT-EMGKYTEV 218

Query: 81  LQAYIDKDRLDCSSEIDASVLVAS-----GLVRRSQ---RGIRI--------------LS 118
             A+  KD +   ++IDA +++ +      L++R Q   R I++              L 
Sbjct: 219 KTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLG 278

Query: 119 DGDLKAKVVL----RVSGASASAVEKVEK 143
           D  ++ K +L    ++   SA+  E+VEK
Sbjct: 279 DQSMRIKHLLPRNTQIVLFSATFSERVEK 307


>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
           genomics, PSI-2, protein structure initiative; HET: ADP;
           2.40A {Deinococcus radiodurans R1}
          Length = 405

 Score = 26.9 bits (59), Expect = 1.9
 Identities = 15/32 (46%), Positives = 16/32 (50%)

Query: 82  QAYIDKDRLDCSSEIDASVLVASGLVRRSQRG 113
           +AY    RLD  S     VL ASGL  R Q G
Sbjct: 252 RAYRQFPRLDLLSGAQTPVLRASGLTLRPQNG 283


>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme,
           electron transfer, folate- methylating enzyme,
           oxidoreductase; HET: NAD FAD FMN; 1.85A
           {Stenotrophomonas maltophilia} PDB: 2gah_C*
          Length = 210

 Score = 25.5 bits (55), Expect = 5.1
 Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 102 VASGLVRRSQRGIRILSDGDLKAKVVLRVSGASASAVEKVEKLGG 146
           + + +   S  G   L +     ++ LR +  +  A   +    G
Sbjct: 19  LDTVMDAASVAGRVELREIAFTTQISLRCAPGTQ-AHAALAAATG 62


>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI,
           protein structure initiative; 2.31A {Geobacillus
           stearothermophilus} SCOP: c.2.1.5 d.162.1.2
          Length = 450

 Score = 25.4 bits (55), Expect = 5.7
 Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 68  IAGSDFV--TISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRIL 117
           + G+DFV     +G L+A    +R+     +        G + +  R I ++
Sbjct: 81  LDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVI 132


>3g63_A Pfluding; subatomic resolution, phosphate binding, DING protein,
          hydrogen ATOM, phosphate binding protein; 0.88A
          {Pseudomonas fluorescens SBW25} PDB: 3g62_A 2q9t_A
          2v3q_A 2cap_A
          Length = 381

 Score = 24.9 bits (53), Expect = 8.1
 Identities = 8/35 (22%), Positives = 11/35 (31%)

Query: 38 QKSRSGVSVRGFEGGQMPLYRRLPKRGFVNIAGSD 72
              SG     F       ++       V+ AGSD
Sbjct: 29 IGVGSGNGKAAFLNNDYTKFQAGVTNKNVHWAGSD 63


>1zup_A Hypothetical protein TM1739; structural genomics, PSI, protein
           structure initiative, joint center for structural
           genomics, JCSG; 2.20A {Thermotoga maritima} SCOP:
           c.55.3.11
          Length = 315

 Score = 24.9 bits (54), Expect = 8.4
 Identities = 12/47 (25%), Positives = 17/47 (36%)

Query: 102 VASGLVRRSQRGIRILSDGDLKAKVVLRVSGASASAVEKVEKLGGQV 148
           +  G V   + G         K  V  RV G S S  E+  +  G +
Sbjct: 83  LCVGAVIWDREGGTKTLFSPDKPPVKERVLGFSQSFQEEGYEEVGGI 129


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.317    0.137    0.372 

Gapped
Lambda     K      H
   0.267   0.0581    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,230,276
Number of extensions: 54061
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 25
Length of query: 151
Length of database: 5,693,230
Length adjustment: 84
Effective length of query: 67
Effective length of database: 3,656,734
Effective search space: 245001178
Effective search space used: 245001178
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.1 bits)