RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780242|ref|YP_003064655.1| 50S ribosomal protein L15 [Candidatus Liberibacter asiaticus str. psy62] (151 letters) >d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 562]} Length = 140 Score = 112 bits (281), Expect = 1e-26 Identities = 59/146 (40%), Positives = 79/146 (54%), Gaps = 8/146 (5%) Query: 4 NEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR-GFEGGQMPLYRRLPK 62 N +S +GS K KR+ RGIGSG GKT GRG KGQKSRSG VR GFEGGQMPLYRRLPK Sbjct: 1 NTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPK 60 Query: 63 RGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDL 122 GF + + I L L +D + L A+ ++ +++ G++ Sbjct: 61 FGFTSRKAAITAEIRLSDLAKV-------EGGVVDLNTLKAANIIGIQIEFAKVILAGEV 113 Query: 123 KAKVVLRVSGASASAVEKVEKLGGQV 148 V +R + A +E GG++ Sbjct: 114 TTPVTVRGLRVTKGARAAIEAAGGKI 139 >d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]} Length = 146 Score = 107 bits (268), Expect = 4e-25 Identities = 55/149 (36%), Positives = 80/149 (53%), Gaps = 7/149 (4%) Query: 5 EISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR--GFEGGQMPLYRRLPK 62 ++ + G+ K +KRV RG GSG GKTA RG KGQKSRSG FEGG+ RLPK Sbjct: 1 DLRPNPGANKRRKRVGRGPGSGHGKTATRGHKGQKSRSGGLKDPRRFEGGRSTTLMRLPK 60 Query: 63 RGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDL 122 RG I Q KD E+ +LV +GL+++ R ++IL +G+ Sbjct: 61 RGMQGQ---VPGEIKRPRYQGVNLKDLARFEGEVTPELLVRAGLLKKGYR-LKILGEGEA 116 Query: 123 KAKVVLRVSGASASAVEKVEKLGGQVIVI 151 K + + S SA+EK++ GG+ +++ Sbjct: 117 K-PLKVVAHAFSKSALEKLKAAGGEPVLL 144 >d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {Deinococcus radiodurans [TaxId: 1299]} Length = 141 Score = 106 bits (267), Expect = 6e-25 Identities = 63/148 (42%), Positives = 84/148 (56%), Gaps = 10/148 (6%) Query: 5 EISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR-GFEGGQMPLYRRLPKR 63 ++ GS K +KRV RG G GT KTAGRG KGQKSRSG FEGG+ L RLPKR Sbjct: 2 DLKPTPGSRKDRKRVGRGPG-GTDKTAGRGHKGQKSRSGAGKGAFFEGGRSRLIARLPKR 60 Query: 64 GFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLK 123 GF N G+ + + L LQ + D L A LVRR R +++L+ G++ Sbjct: 61 GF-NNVGTTYEVVKLSQLQDL-------EDTTFDRDTLEAYRLVRRKNRPVKLLASGEIS 112 Query: 124 AKVVLRVSGASASAVEKVEKLGGQVIVI 151 V + V ASA+A++ VE GG+V++ Sbjct: 113 RAVTVHVDAASAAAIKAVEAAGGRVVLP 140 >d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 150 Score = 88.9 bits (220), Expect = 2e-19 Identities = 30/145 (20%), Positives = 52/145 (35%), Gaps = 12/145 (8%) Query: 14 KVKKRVARGIGSGTGKT-AGRGVKGQKSRSGVSVRGFEGGQMPLYRRLPKRGFVNI--AG 70 K ++R +R G G+ K G G +G + +G F + L K GF Sbjct: 4 KKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKHEFHN-----HEPLGKSGFKRPQKVQ 58 Query: 71 SDFVTISLGLLQAYID----KDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLKAKV 126 + TI + + + D + + +++L G ++ ++ Sbjct: 59 EEAATIDVREIDENVTLLAADDVAEVEDGGFRVDVRDVVEEADDADYVKVLGAGQVRHEL 118 Query: 127 VLRVSGASASAVEKVEKLGGQVIVI 151 L S A EKVE GG V + Sbjct: 119 TLIADDFSEGAREKVEGAGGSVELT 143 >d1vqoo1 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 115 Score = 33.5 bits (77), Expect = 0.008 Identities = 9/36 (25%), Positives = 19/36 (52%) Query: 115 RILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVIV 150 ++L G L+ V + S +A K++++G V + Sbjct: 63 KVLGSGVLQKDVTVAAVDFSGTAETKIDQVGEAVSL 98 >d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 288 Score = 25.2 bits (54), Expect = 2.6 Identities = 6/17 (35%), Positives = 11/17 (64%) Query: 135 ASAVEKVEKLGGQVIVI 151 AS V+ +E G +V+ + Sbjct: 28 ASYVKYLESAGARVVPV 44 >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 152 Score = 24.8 bits (53), Expect = 3.1 Identities = 7/29 (24%), Positives = 12/29 (41%) Query: 123 KAKVVLRVSGASASAVEKVEKLGGQVIVI 151 A + + SG A K+ + G + V Sbjct: 120 GADIRIIASGRDAEEFMKLNRYGLNIEVR 148 >d1zupa1 c.55.3.11 (A:1-301) Hypothetical protein TM1739 {Thermotoga maritima [TaxId: 2336]} Length = 301 Score = 23.3 bits (50), Expect = 9.5 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%) Query: 102 VASGLVRRSQRGIRILSDGDLKAKVVLRVSG-ASASAVEKVEKLGGQV 148 + G V + G K V RV G + + E E++GG + Sbjct: 71 LCVGAVIWDREGGTKTLFSPDKPPVKERVLGFSQSFQEEGYEEVGGIL 118 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.317 0.137 0.372 Gapped Lambda K H 0.267 0.0567 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 526,318 Number of extensions: 23105 Number of successful extensions: 63 Number of sequences better than 10.0: 1 Number of HSP's gapped: 53 Number of HSP's successfully gapped: 11 Length of query: 151 Length of database: 2,407,596 Length adjustment: 78 Effective length of query: 73 Effective length of database: 1,336,656 Effective search space: 97575888 Effective search space used: 97575888 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 49 (23.0 bits)