RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780242|ref|YP_003064655.1| 50S ribosomal protein L15
[Candidatus Liberibacter asiaticus str. psy62]
         (151 letters)



>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p)
           {Escherichia coli [TaxId: 562]}
          Length = 140

 Score =  112 bits (281), Expect = 1e-26
 Identities = 59/146 (40%), Positives = 79/146 (54%), Gaps = 8/146 (5%)

Query: 4   NEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR-GFEGGQMPLYRRLPK 62
           N +S  +GS K  KR+ RGIGSG GKT GRG KGQKSRSG  VR GFEGGQMPLYRRLPK
Sbjct: 1   NTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPK 60

Query: 63  RGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDL 122
            GF +   +    I L  L              +D + L A+ ++       +++  G++
Sbjct: 61  FGFTSRKAAITAEIRLSDLAKV-------EGGVVDLNTLKAANIIGIQIEFAKVILAGEV 113

Query: 123 KAKVVLRVSGASASAVEKVEKLGGQV 148
              V +R    +  A   +E  GG++
Sbjct: 114 TTPVTVRGLRVTKGARAAIEAAGGKI 139


>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus
           thermophilus [TaxId: 274]}
          Length = 146

 Score =  107 bits (268), Expect = 4e-25
 Identities = 55/149 (36%), Positives = 80/149 (53%), Gaps = 7/149 (4%)

Query: 5   EISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR--GFEGGQMPLYRRLPK 62
           ++  + G+ K +KRV RG GSG GKTA RG KGQKSRSG       FEGG+     RLPK
Sbjct: 1   DLRPNPGANKRRKRVGRGPGSGHGKTATRGHKGQKSRSGGLKDPRRFEGGRSTTLMRLPK 60

Query: 63  RGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDL 122
           RG           I     Q    KD      E+   +LV +GL+++  R ++IL +G+ 
Sbjct: 61  RGMQGQ---VPGEIKRPRYQGVNLKDLARFEGEVTPELLVRAGLLKKGYR-LKILGEGEA 116

Query: 123 KAKVVLRVSGASASAVEKVEKLGGQVIVI 151
           K  + +     S SA+EK++  GG+ +++
Sbjct: 117 K-PLKVVAHAFSKSALEKLKAAGGEPVLL 144


>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p)
           {Deinococcus radiodurans [TaxId: 1299]}
          Length = 141

 Score =  106 bits (267), Expect = 6e-25
 Identities = 63/148 (42%), Positives = 84/148 (56%), Gaps = 10/148 (6%)

Query: 5   EISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR-GFEGGQMPLYRRLPKR 63
           ++    GS K +KRV RG G GT KTAGRG KGQKSRSG      FEGG+  L  RLPKR
Sbjct: 2   DLKPTPGSRKDRKRVGRGPG-GTDKTAGRGHKGQKSRSGAGKGAFFEGGRSRLIARLPKR 60

Query: 64  GFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLK 123
           GF N  G+ +  + L  LQ           +  D   L A  LVRR  R +++L+ G++ 
Sbjct: 61  GF-NNVGTTYEVVKLSQLQDL-------EDTTFDRDTLEAYRLVRRKNRPVKLLASGEIS 112

Query: 124 AKVVLRVSGASASAVEKVEKLGGQVIVI 151
             V + V  ASA+A++ VE  GG+V++ 
Sbjct: 113 RAVTVHVDAASAAAIKAVEAAGGRVVLP 140


>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 150

 Score = 88.9 bits (220), Expect = 2e-19
 Identities = 30/145 (20%), Positives = 52/145 (35%), Gaps = 12/145 (8%)

Query: 14  KVKKRVARGIGSGTGKT-AGRGVKGQKSRSGVSVRGFEGGQMPLYRRLPKRGFVNI--AG 70
           K ++R +R  G G+ K   G G +G +  +G     F       +  L K GF       
Sbjct: 4   KKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKHEFHN-----HEPLGKSGFKRPQKVQ 58

Query: 71  SDFVTISLGLLQAYID----KDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLKAKV 126
            +  TI +  +   +      D  +         +            +++L  G ++ ++
Sbjct: 59  EEAATIDVREIDENVTLLAADDVAEVEDGGFRVDVRDVVEEADDADYVKVLGAGQVRHEL 118

Query: 127 VLRVSGASASAVEKVEKLGGQVIVI 151
            L     S  A EKVE  GG V + 
Sbjct: 119 TLIADDFSEGAREKVEGAGGSVELT 143


>d1vqoo1 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 115

 Score = 33.5 bits (77), Expect = 0.008
 Identities = 9/36 (25%), Positives = 19/36 (52%)

Query: 115 RILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVIV 150
           ++L  G L+  V +     S +A  K++++G  V +
Sbjct: 63  KVLGSGVLQKDVTVAAVDFSGTAETKIDQVGEAVSL 98


>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 288

 Score = 25.2 bits (54), Expect = 2.6
 Identities = 6/17 (35%), Positives = 11/17 (64%)

Query: 135 ASAVEKVEKLGGQVIVI 151
           AS V+ +E  G +V+ +
Sbjct: 28  ASYVKYLESAGARVVPV 44


>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747
           {Archaeon Methanobacterium thermoautotrophicum [TaxId:
           145262]}
          Length = 152

 Score = 24.8 bits (53), Expect = 3.1
 Identities = 7/29 (24%), Positives = 12/29 (41%)

Query: 123 KAKVVLRVSGASASAVEKVEKLGGQVIVI 151
            A + +  SG  A    K+ + G  + V 
Sbjct: 120 GADIRIIASGRDAEEFMKLNRYGLNIEVR 148


>d1zupa1 c.55.3.11 (A:1-301) Hypothetical protein TM1739 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 301

 Score = 23.3 bits (50), Expect = 9.5
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 102 VASGLVRRSQRGIRILSDGDLKAKVVLRVSG-ASASAVEKVEKLGGQV 148
           +  G V   + G         K  V  RV G + +   E  E++GG +
Sbjct: 71  LCVGAVIWDREGGTKTLFSPDKPPVKERVLGFSQSFQEEGYEEVGGIL 118


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.137    0.372 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 526,318
Number of extensions: 23105
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 11
Length of query: 151
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 73
Effective length of database: 1,336,656
Effective search space: 97575888
Effective search space used: 97575888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.0 bits)