BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780242|ref|YP_003064655.1| 50S ribosomal protein L15
[Candidatus Liberibacter asiaticus str. psy62]
         (151 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780242|ref|YP_003064655.1| 50S ribosomal protein L15 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 151

 Score =  291 bits (745), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 151/151 (100%), Positives = 151/151 (100%)

Query: 1   MKLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVRGFEGGQMPLYRRL 60
           MKLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVRGFEGGQMPLYRRL
Sbjct: 1   MKLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVRGFEGGQMPLYRRL 60

Query: 61  PKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDG 120
           PKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDG
Sbjct: 61  PKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDG 120

Query: 121 DLKAKVVLRVSGASASAVEKVEKLGGQVIVI 151
           DLKAKVVLRVSGASASAVEKVEKLGGQVIVI
Sbjct: 121 DLKAKVVLRVSGASASAVEKVEKLGGQVIVI 151


>gi|254780675|ref|YP_003065088.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 481

 Score = 22.7 bits (47), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 15/56 (26%), Positives = 25/56 (44%)

Query: 87  KDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLKAKVVLRVSGASASAVEKVE 142
           K  L   SEI  S      +  +     ++L +G  KAK ++  +GA    +E +E
Sbjct: 114 KATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARPRHIEGIE 169


>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
          Length = 647

 Score = 21.9 bits (45), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 65  FVNIAGSDFVTISLGL 80
           F  I+GSDFV + +G+
Sbjct: 209 FFTISGSDFVELFVGV 224


>gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 478

 Score = 21.2 bits (43), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 45  SVRGFEGGQMPLYRRLPKRGFVNIAGSD 72
           ++RGF+G     Y  LP+  F  +   D
Sbjct: 442 TIRGFKGLVQGEYDHLPELAFYMVGSID 469


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.137    0.372 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,020
Number of Sequences: 1233
Number of extensions: 3280
Number of successful extensions: 8
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 5
length of query: 151
length of database: 328,796
effective HSP length: 67
effective length of query: 84
effective length of database: 246,185
effective search space: 20679540
effective search space used: 20679540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)