Query gi|254780243|ref|YP_003064656.1| 50S ribosomal protein L30 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 64
No_of_seqs 107 out of 803
Neff 4.7
Searched_HMMs 13730
Date Tue May 24 01:51:58 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780243.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bxya_ d.59.1.1 (A:) Prokaryo 99.9 2.5E-24 1.8E-28 148.5 7.3 58 7-64 1-58 (60)
2 d2zjrw1 d.59.1.1 (W:1-55) Prok 99.9 5.2E-24 3.8E-28 146.8 5.5 55 10-64 1-55 (55)
3 d2gycx1 d.59.1.1 (X:3-58) Prok 99.9 1.5E-23 1.1E-27 144.4 5.5 56 9-64 1-56 (56)
4 d1vqow1 d.59.1.1 (W:1-154) Arc 99.5 2E-14 1.4E-18 95.6 7.0 55 10-64 2-56 (154)
5 d1a4ma_ c.1.9.1 (A:) Adenosine 23.3 19 0.0014 15.5 1.9 50 8-57 204-253 (349)
6 d2ccqa1 d.314.1.1 (A:11-109) N 11.0 24 0.0018 15.0 -0.1 47 16-63 52-98 (99)
7 d3dhza1 a.25.1.2 (A:14-297) Ri 7.4 69 0.0051 12.5 1.1 28 26-53 256-283 (284)
8 d1jhfa1 a.4.5.2 (A:2-72) LexA 7.3 65 0.0048 12.7 0.9 17 19-35 21-37 (71)
9 d2qdya1 d.149.1.1 (A:10-206) I 6.5 54 0.0039 13.1 0.1 27 26-52 70-98 (197)
10 d1jr2a_ c.113.1.1 (A:) Uroporp 5.7 91 0.0066 11.9 2.4 35 22-60 225-259 (260)
No 1
>d1bxya_ d.59.1.1 (A:) Prokaryotic ribosomal protein L30 {Thermus thermophilus [TaxId: 274]}
Probab=99.90 E-value=2.5e-24 Score=148.49 Aligned_cols=58 Identities=41% Similarity=0.714 Sum_probs=56.9
Q ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHEEEEC
Q ss_conf 2625999973368989899999998383467982898299789707986211147839
Q gi|254780243|r 7 MQKITVQQIGSPIRRPSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVHHLVRIVE 64 (64)
Q Consensus 7 ~~~ikItlvkS~iG~~~~~r~tl~~LGL~k~~~~v~~~dtP~irGmi~kV~hLV~VeE 64 (64)
|++++|||+||.||+|++||+|+++|||+|+|++++++|||+++|||++|+|||+|||
T Consensus 1 MaklkIt~vrS~iG~~~~~k~tl~~LGL~k~~~~v~~~~tp~i~Gmi~kVkhLV~Vee 58 (60)
T d1bxya_ 1 MPRLKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVEV 58 (60)
T ss_dssp CCEEEEEECSCCTTCCHHHHHHHHHHTCCSTTCEEEEECCHHHHHHHHHTTTTEEEEE
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHEEEEEE
T ss_conf 9967999935889999899999998199979998995799889889984112469997
No 2
>d2zjrw1 d.59.1.1 (W:1-55) Prokaryotic ribosomal protein L30 {Deinococcus radiodurans [TaxId: 1299]}
Probab=99.89 E-value=5.2e-24 Score=146.79 Aligned_cols=55 Identities=42% Similarity=0.690 Sum_probs=54.3
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHEEEEC
Q ss_conf 5999973368989899999998383467982898299789707986211147839
Q gi|254780243|r 10 ITVQQIGSPIRRPSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVHHLVRIVE 64 (64)
Q Consensus 10 ikItlvkS~iG~~~~~r~tl~~LGL~k~~~~v~~~dtP~irGmi~kV~hLV~VeE 64 (64)
++|||+||+||++++||+|+++|||+|+|++++++|||+++|||++|+|||+|||
T Consensus 1 lkItlvrS~iG~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGmi~kV~hLV~VeE 55 (55)
T d2zjrw1 1 MKIKLVRSVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRGMVKTVKHLLEVQE 55 (55)
T ss_dssp CEEEBCSCSTTSCHHHHHHHHHTTCCSTTCEEECCCSHHHHHHHHHTGGGBCCCC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHEEEEEC
T ss_conf 9599974888999899999999299979998994799789889985043179859
No 3
>d2gycx1 d.59.1.1 (X:3-58) Prokaryotic ribosomal protein L30 {Escherichia coli [TaxId: 562]}
Probab=99.88 E-value=1.5e-23 Score=144.40 Aligned_cols=56 Identities=36% Similarity=0.631 Sum_probs=55.0
Q ss_pred EEEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHEEEEC
Q ss_conf 25999973368989899999998383467982898299789707986211147839
Q gi|254780243|r 9 KITVQQIGSPIRRPSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVHHLVRIVE 64 (64)
Q Consensus 9 ~ikItlvkS~iG~~~~~r~tl~~LGL~k~~~~v~~~dtP~irGmi~kV~hLV~VeE 64 (64)
.|+|||+||.||++++||+|+++|||+|+|++|+++|||++||||++|+|||+|||
T Consensus 1 tikItlvrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGmi~kVkhLV~veE 56 (56)
T d2gycx1 1 TIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAVSFMVKVEE 56 (56)
T ss_dssp CEEEEECSCSSSCCTTHHHHHHHHTCCSTTCEEEECCCTTHHHHHHHTTTTEECCC
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHEEEEEC
T ss_conf 97999934889989899999998099979998995799889889996354269749
No 4
>d1vqow1 d.59.1.1 (W:1-154) Archaeal L30 (L30a) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=99.50 E-value=2e-14 Score=95.60 Aligned_cols=55 Identities=22% Similarity=0.395 Sum_probs=53.2
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHEEEEC
Q ss_conf 5999973368989899999998383467982898299789707986211147839
Q gi|254780243|r 10 ITVQQIGSPIRRPSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVHHLVRIVE 64 (64)
Q Consensus 10 ikItlvkS~iG~~~~~r~tl~~LGL~k~~~~v~~~dtP~irGmi~kV~hLV~VeE 64 (64)
+.|+++||.+|.++++++|+++|||+++|++|+++|||+++|||++|+|+|.+.|
T Consensus 2 ~aViRIRg~ig~~~~~r~tL~~LrL~k~~~~V~~~~tp~~~gML~kVk~yVt~G~ 56 (154)
T d1vqow1 2 HALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGE 56 (154)
T ss_dssp EEEEECSCSTTSCHHHHHHHHHTTCCSTTEEEEECCCHHHHHHHHHSTTSEEEEC
T ss_pred EEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHCCCEEEEC
T ss_conf 4699826878989899999998399868987893389899999875066346763
No 5
>d1a4ma_ c.1.9.1 (A:) Adenosine deaminase (ADA) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.33 E-value=19 Score=15.49 Aligned_cols=50 Identities=10% Similarity=0.056 Sum_probs=42.2
Q ss_pred CEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHH
Q ss_conf 62599997336898989999999838346798289829978970798621
Q gi|254780243|r 8 QKITVQQIGSPIRRPSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVH 57 (64)
Q Consensus 8 ~~ikItlvkS~iG~~~~~r~tl~~LGL~k~~~~v~~~dtP~irGmi~kV~ 57 (64)
..+++|..-+=.+.+...+..+..||-.|+|+-+-..+.|...-++..=.
T Consensus 204 ~gl~~t~HaGE~~~~~~i~~ai~~l~~~RIGHG~~l~~d~~l~~~~~~~~ 253 (349)
T d1a4ma_ 204 NGIHRTVHAGEVGSPEVVREAVDILKTERVGHGYHTIEDEALYNRLLKEN 253 (349)
T ss_dssp HTCEEEEEESSSSCHHHHHHHHHTSCCSEEEECGGGGGSHHHHHHHHHTT
T ss_pred CCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHCC
T ss_conf 29955531577798078999999828765577101136878988766318
No 6
>d2ccqa1 d.314.1.1 (A:11-109) N-glycanase 1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.99 E-value=24 Score=14.96 Aligned_cols=47 Identities=11% Similarity=0.181 Sum_probs=33.5
Q ss_pred ECCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHEEEE
Q ss_conf 336898989999999838346798289829978970798621114783
Q gi|254780243|r 16 GSPIRRPSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVHHLVRIV 63 (64)
Q Consensus 16 kS~iG~~~~~r~tl~~LGL~k~~~~v~~~dtP~irGmi~kV~hLV~Ve 63 (64)
++.++.-+.-.+.+.++|+..-+...+.|.... ...+.+++.++..|
T Consensus 52 ~~~v~~~~ga~e~L~~~GF~e~~~~lvlp~~~~-~~~l~~~rd~L~~e 98 (99)
T d2ccqa1 52 STRLLPVRGAVECLFEMGFEEGETHLIFPKKAS-VEQLQKIRDLIAIE 98 (99)
T ss_dssp HHHTTTSTTHHHHHHHHTCEECSSEEECCTTSC-HHHHHHHHHHHHTT
T ss_pred HHHHCCCCCHHHHHHHCCCEECCCEEEECCCCC-HHHHHHHHHHHHHC
T ss_conf 998715520999999929646886688269898-99999999999733
No 7
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Corynebacterium ammoniagenes [TaxId: 1697]}
Probab=7.42 E-value=69 Score=12.51 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=22.1
Q ss_pred HHHHHHHCCCCCCCEEEECCCHHHHHHH
Q ss_conf 9999983834679828982997897079
Q gi|254780243|r 26 RKVLIGLGLNKMNRCRVLDDTPSVRGMI 53 (64)
Q Consensus 26 r~tl~~LGL~k~~~~v~~~dtP~irGmi 53 (64)
-..+.+||+.++......+.||-++.-|
T Consensus 256 n~~L~~lG~~~~f~~~~~~~nP~~~~~~ 283 (284)
T d3dhza1 256 NKALNNLGYEGLFPTDETKVSPAILSSL 283 (284)
T ss_dssp HHHHHHTTCCCSSCGGGCCCCHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHCC
T ss_conf 9999978899999985577887888224
No 8
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=7.32 E-value=65 Score=12.65 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=14.0
Q ss_pred CCCCHHHHHHHHHHCCC
Q ss_conf 89898999999983834
Q gi|254780243|r 19 IRRPSVQRKVLIGLGLN 35 (64)
Q Consensus 19 iG~~~~~r~tl~~LGL~ 35 (64)
-|.||..+...+++|++
T Consensus 21 ~G~~Ps~rei~~~~g~~ 37 (71)
T d1jhfa1 21 TGMPPTRAEIAQRLGFR 37 (71)
T ss_dssp HSSCCCHHHHHHHTTCS
T ss_pred HCCCCCHHHHHHHCCCC
T ss_conf 28898899999772999
No 9
>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=6.46 E-value=54 Score=13.10 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=18.4
Q ss_pred HHHHHHHCCCC--CCCEEEECCCHHHHHH
Q ss_conf 99999838346--7982898299789707
Q gi|254780243|r 26 RKVLIGLGLNK--MNRCRVLDDTPSVRGM 52 (64)
Q Consensus 26 r~tl~~LGL~k--~~~~v~~~dtP~irGm 52 (64)
.+.++.||+.- --+.++++|||.+..+
T Consensus 70 ~aAi~elG~~g~~g~~l~VvENT~~vHnv 98 (197)
T d2qdya1 70 TAAVAQYGYLGPQGEYIVAVEDTPTLKNV 98 (197)
T ss_dssp HHHHHHTTCCBTTBSSEEEEECBTTEEEE
T ss_pred HHHHHHCCCCCCCCCEEEEEECCCCCEEE
T ss_conf 99999849887776528998468650257
No 10
>d1jr2a_ c.113.1.1 (A:) Uroporphyrinogen III synthase (U3S, HemD) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.69 E-value=91 Score=11.88 Aligned_cols=35 Identities=11% Similarity=0.304 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHE
Q ss_conf 989999999838346798289829978970798621114
Q gi|254780243|r 22 PSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVHHLV 60 (64)
Q Consensus 22 ~~~~r~tl~~LGL~k~~~~v~~~dtP~irGmi~kV~hLV 60 (64)
.+...+.++.+|++ ..+..+.|+..||+..+...+
T Consensus 225 G~~ta~~l~~~G~~----~~~~a~~p~~e~lv~aI~~~l 259 (260)
T d1jr2a_ 225 GPTTARALAAQGLP----VSCTAESPTPQALATGIRKAL 259 (260)
T ss_dssp SHHHHHHHHHTTCC----CSEECSSSSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHCCCC----CEEEECCCCHHHHHHHHHHHH
T ss_conf 89999999976997----269969899899999999986
Done!