Query gi|254780243|ref|YP_003064656.1| 50S ribosomal protein L30 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 64 No_of_seqs 107 out of 803 Neff 4.7 Searched_HMMs 13730 Date Tue May 24 01:51:58 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780243.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1bxya_ d.59.1.1 (A:) Prokaryo 99.9 2.5E-24 1.8E-28 148.5 7.3 58 7-64 1-58 (60) 2 d2zjrw1 d.59.1.1 (W:1-55) Prok 99.9 5.2E-24 3.8E-28 146.8 5.5 55 10-64 1-55 (55) 3 d2gycx1 d.59.1.1 (X:3-58) Prok 99.9 1.5E-23 1.1E-27 144.4 5.5 56 9-64 1-56 (56) 4 d1vqow1 d.59.1.1 (W:1-154) Arc 99.5 2E-14 1.4E-18 95.6 7.0 55 10-64 2-56 (154) 5 d1a4ma_ c.1.9.1 (A:) Adenosine 23.3 19 0.0014 15.5 1.9 50 8-57 204-253 (349) 6 d2ccqa1 d.314.1.1 (A:11-109) N 11.0 24 0.0018 15.0 -0.1 47 16-63 52-98 (99) 7 d3dhza1 a.25.1.2 (A:14-297) Ri 7.4 69 0.0051 12.5 1.1 28 26-53 256-283 (284) 8 d1jhfa1 a.4.5.2 (A:2-72) LexA 7.3 65 0.0048 12.7 0.9 17 19-35 21-37 (71) 9 d2qdya1 d.149.1.1 (A:10-206) I 6.5 54 0.0039 13.1 0.1 27 26-52 70-98 (197) 10 d1jr2a_ c.113.1.1 (A:) Uroporp 5.7 91 0.0066 11.9 2.4 35 22-60 225-259 (260) No 1 >d1bxya_ d.59.1.1 (A:) Prokaryotic ribosomal protein L30 {Thermus thermophilus [TaxId: 274]} Probab=99.90 E-value=2.5e-24 Score=148.49 Aligned_cols=58 Identities=41% Similarity=0.714 Sum_probs=56.9 Q ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHEEEEC Q ss_conf 2625999973368989899999998383467982898299789707986211147839 Q gi|254780243|r 7 MQKITVQQIGSPIRRPSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVHHLVRIVE 64 (64) Q Consensus 7 ~~~ikItlvkS~iG~~~~~r~tl~~LGL~k~~~~v~~~dtP~irGmi~kV~hLV~VeE 64 (64) |++++|||+||.||+|++||+|+++|||+|+|++++++|||+++|||++|+|||+||| T Consensus 1 MaklkIt~vrS~iG~~~~~k~tl~~LGL~k~~~~v~~~~tp~i~Gmi~kVkhLV~Vee 58 (60) T d1bxya_ 1 MPRLKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVEV 58 (60) T ss_dssp CCEEEEEECSCCTTCCHHHHHHHHHHTCCSTTCEEEEECCHHHHHHHHHTTTTEEEEE T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHEEEEEE T ss_conf 9967999935889999899999998199979998995799889889984112469997 No 2 >d2zjrw1 d.59.1.1 (W:1-55) Prokaryotic ribosomal protein L30 {Deinococcus radiodurans [TaxId: 1299]} Probab=99.89 E-value=5.2e-24 Score=146.79 Aligned_cols=55 Identities=42% Similarity=0.690 Sum_probs=54.3 Q ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHEEEEC Q ss_conf 5999973368989899999998383467982898299789707986211147839 Q gi|254780243|r 10 ITVQQIGSPIRRPSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVHHLVRIVE 64 (64) Q Consensus 10 ikItlvkS~iG~~~~~r~tl~~LGL~k~~~~v~~~dtP~irGmi~kV~hLV~VeE 64 (64) ++|||+||+||++++||+|+++|||+|+|++++++|||+++|||++|+|||+||| T Consensus 1 lkItlvrS~iG~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGmi~kV~hLV~VeE 55 (55) T d2zjrw1 1 MKIKLVRSVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRGMVKTVKHLLEVQE 55 (55) T ss_dssp CEEEBCSCSTTSCHHHHHHHHHTTCCSTTCEEECCCSHHHHHHHHHTGGGBCCCC T ss_pred CEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHEEEEEC T ss_conf 9599974888999899999999299979998994799789889985043179859 No 3 >d2gycx1 d.59.1.1 (X:3-58) Prokaryotic ribosomal protein L30 {Escherichia coli [TaxId: 562]} Probab=99.88 E-value=1.5e-23 Score=144.40 Aligned_cols=56 Identities=36% Similarity=0.631 Sum_probs=55.0 Q ss_pred EEEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHEEEEC Q ss_conf 25999973368989899999998383467982898299789707986211147839 Q gi|254780243|r 9 KITVQQIGSPIRRPSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVHHLVRIVE 64 (64) Q Consensus 9 ~ikItlvkS~iG~~~~~r~tl~~LGL~k~~~~v~~~dtP~irGmi~kV~hLV~VeE 64 (64) .|+|||+||.||++++||+|+++|||+|+|++|+++|||++||||++|+|||+||| T Consensus 1 tikItlvrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGmi~kVkhLV~veE 56 (56) T d2gycx1 1 TIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAVSFMVKVEE 56 (56) T ss_dssp CEEEEECSCSSSCCTTHHHHHHHHTCCSTTCEEEECCCTTHHHHHHHTTTTEECCC T ss_pred CEEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHEEEEEC T ss_conf 97999934889989899999998099979998995799889889996354269749 No 4 >d1vqow1 d.59.1.1 (W:1-154) Archaeal L30 (L30a) {Archaeon Haloarcula marismortui [TaxId: 2238]} Probab=99.50 E-value=2e-14 Score=95.60 Aligned_cols=55 Identities=22% Similarity=0.395 Sum_probs=53.2 Q ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHEEEEC Q ss_conf 5999973368989899999998383467982898299789707986211147839 Q gi|254780243|r 10 ITVQQIGSPIRRPSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVHHLVRIVE 64 (64) Q Consensus 10 ikItlvkS~iG~~~~~r~tl~~LGL~k~~~~v~~~dtP~irGmi~kV~hLV~VeE 64 (64) +.|+++||.+|.++++++|+++|||+++|++|+++|||+++|||++|+|+|.+.| T Consensus 2 ~aViRIRg~ig~~~~~r~tL~~LrL~k~~~~V~~~~tp~~~gML~kVk~yVt~G~ 56 (154) T d1vqow1 2 HALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGE 56 (154) T ss_dssp EEEEECSCSTTSCHHHHHHHHHTTCCSTTEEEEECCCHHHHHHHHHSTTSEEEEC T ss_pred EEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHCCCEEEEC T ss_conf 4699826878989899999998399868987893389899999875066346763 No 5 >d1a4ma_ c.1.9.1 (A:) Adenosine deaminase (ADA) {Mouse (Mus musculus) [TaxId: 10090]} Probab=23.33 E-value=19 Score=15.49 Aligned_cols=50 Identities=10% Similarity=0.056 Sum_probs=42.2 Q ss_pred CEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHH Q ss_conf 62599997336898989999999838346798289829978970798621 Q gi|254780243|r 8 QKITVQQIGSPIRRPSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVH 57 (64) Q Consensus 8 ~~ikItlvkS~iG~~~~~r~tl~~LGL~k~~~~v~~~dtP~irGmi~kV~ 57 (64) ..+++|..-+=.+.+...+..+..||-.|+|+-+-..+.|...-++..=. T Consensus 204 ~gl~~t~HaGE~~~~~~i~~ai~~l~~~RIGHG~~l~~d~~l~~~~~~~~ 253 (349) T d1a4ma_ 204 NGIHRTVHAGEVGSPEVVREAVDILKTERVGHGYHTIEDEALYNRLLKEN 253 (349) T ss_dssp HTCEEEEEESSSSCHHHHHHHHHTSCCSEEEECGGGGGSHHHHHHHHHTT T ss_pred CCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHCC T ss_conf 29955531577798078999999828765577101136878988766318 No 6 >d2ccqa1 d.314.1.1 (A:11-109) N-glycanase 1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=10.99 E-value=24 Score=14.96 Aligned_cols=47 Identities=11% Similarity=0.181 Sum_probs=33.5 Q ss_pred ECCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHEEEE Q ss_conf 336898989999999838346798289829978970798621114783 Q gi|254780243|r 16 GSPIRRPSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVHHLVRIV 63 (64) Q Consensus 16 kS~iG~~~~~r~tl~~LGL~k~~~~v~~~dtP~irGmi~kV~hLV~Ve 63 (64) ++.++.-+.-.+.+.++|+..-+...+.|.... ...+.+++.++..| T Consensus 52 ~~~v~~~~ga~e~L~~~GF~e~~~~lvlp~~~~-~~~l~~~rd~L~~e 98 (99) T d2ccqa1 52 STRLLPVRGAVECLFEMGFEEGETHLIFPKKAS-VEQLQKIRDLIAIE 98 (99) T ss_dssp HHHTTTSTTHHHHHHHHTCEECSSEEECCTTSC-HHHHHHHHHHHHTT T ss_pred HHHHCCCCCHHHHHHHCCCEECCCEEEECCCCC-HHHHHHHHHHHHHC T ss_conf 998715520999999929646886688269898-99999999999733 No 7 >d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Corynebacterium ammoniagenes [TaxId: 1697]} Probab=7.42 E-value=69 Score=12.51 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=22.1 Q ss_pred HHHHHHHCCCCCCCEEEECCCHHHHHHH Q ss_conf 9999983834679828982997897079 Q gi|254780243|r 26 RKVLIGLGLNKMNRCRVLDDTPSVRGMI 53 (64) Q Consensus 26 r~tl~~LGL~k~~~~v~~~dtP~irGmi 53 (64) -..+.+||+.++......+.||-++.-| T Consensus 256 n~~L~~lG~~~~f~~~~~~~nP~~~~~~ 283 (284) T d3dhza1 256 NKALNNLGYEGLFPTDETKVSPAILSSL 283 (284) T ss_dssp HHHHHHTTCCCSSCGGGCCCCHHHHHHH T ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHCC T ss_conf 9999978899999985577887888224 No 8 >d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]} Probab=7.32 E-value=65 Score=12.65 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=14.0 Q ss_pred CCCCHHHHHHHHHHCCC Q ss_conf 89898999999983834 Q gi|254780243|r 19 IRRPSVQRKVLIGLGLN 35 (64) Q Consensus 19 iG~~~~~r~tl~~LGL~ 35 (64) -|.||..+...+++|++ T Consensus 21 ~G~~Ps~rei~~~~g~~ 37 (71) T d1jhfa1 21 TGMPPTRAEIAQRLGFR 37 (71) T ss_dssp HSSCCCHHHHHHHTTCS T ss_pred HCCCCCHHHHHHHCCCC T ss_conf 28898899999772999 No 9 >d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase {Rhodococcus erythropolis [TaxId: 1833]} Probab=6.46 E-value=54 Score=13.10 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=18.4 Q ss_pred HHHHHHHCCCC--CCCEEEECCCHHHHHH Q ss_conf 99999838346--7982898299789707 Q gi|254780243|r 26 RKVLIGLGLNK--MNRCRVLDDTPSVRGM 52 (64) Q Consensus 26 r~tl~~LGL~k--~~~~v~~~dtP~irGm 52 (64) .+.++.||+.- --+.++++|||.+..+ T Consensus 70 ~aAi~elG~~g~~g~~l~VvENT~~vHnv 98 (197) T d2qdya1 70 TAAVAQYGYLGPQGEYIVAVEDTPTLKNV 98 (197) T ss_dssp HHHHHHTTCCBTTBSSEEEEECBTTEEEE T ss_pred HHHHHHCCCCCCCCCEEEEEECCCCCEEE T ss_conf 99999849887776528998468650257 No 10 >d1jr2a_ c.113.1.1 (A:) Uroporphyrinogen III synthase (U3S, HemD) {Human (Homo sapiens) [TaxId: 9606]} Probab=5.69 E-value=91 Score=11.88 Aligned_cols=35 Identities=11% Similarity=0.304 Sum_probs=25.6 Q ss_pred CHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHE Q ss_conf 989999999838346798289829978970798621114 Q gi|254780243|r 22 PSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVHHLV 60 (64) Q Consensus 22 ~~~~r~tl~~LGL~k~~~~v~~~dtP~irGmi~kV~hLV 60 (64) .+...+.++.+|++ ..+..+.|+..||+..+...+ T Consensus 225 G~~ta~~l~~~G~~----~~~~a~~p~~e~lv~aI~~~l 259 (260) T d1jr2a_ 225 GPTTARALAAQGLP----VSCTAESPTPQALATGIRKAL 259 (260) T ss_dssp SHHHHHHHHHTTCC----CSEECSSSSHHHHHHHHHHHT T ss_pred CHHHHHHHHHCCCC----CEEEECCCCHHHHHHHHHHHH T ss_conf 89999999976997----269969899899999999986 Done!