RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780243|ref|YP_003064656.1| 50S ribosomal protein L30 [Candidatus Liberibacter asiaticus str. psy62] (64 letters) >1bxy_A Protein (ribosomal protein L30); X-RAY crystallography, conformational changes; 1.90A {Thermus thermophilus} (A:) Length = 60 Score = 70.0 bits (172), Expect = 1e-13 Identities = 24/58 (41%), Positives = 37/58 (63%) Query: 7 MQKITVQQIGSPIRRPSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVHHLVRIVE 64 M ++ V+ + SPI P Q+ L LGL ++ + RVL+DTP++RG + V HLVR+ Sbjct: 1 MPRLKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVEV 58 >2zjr_W 50S ribosomal protein L30; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (W:) Length = 55 Score = 67.2 bits (165), Expect = 8e-13 Identities = 23/55 (41%), Positives = 34/55 (61%) Query: 10 ITVQQIGSPIRRPSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVHHLVRIVE 64 + ++ + S I RP Q K + LGL K+ R + DTP+VRGM+ TV HL+ + E Sbjct: 1 MKIKLVRSVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRGMVKTVKHLLEVQE 55 >3i1n_Z 50S ribosomal protein L30; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_Y 3e1b_R 3e1d_R 1vs6_Y 3i1p_Z 3i1r_Z 3i1t_Z 3i20_Z 3i22_Z 2qam_Y* 1p85_X 1p86_X 2awb_Y 2aw4_Y 2i2v_Z 2j28_Y 2i2t_Z* 2qao_Y* 2qba_Y* 2qbc_Y* ... (Z:) Length = 59 Score = 66.1 bits (162), Expect = 1e-12 Identities = 20/56 (35%), Positives = 32/56 (57%) Query: 9 KITVQQIGSPIRRPSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVHHLVRIVE 64 I + Q S I R + L+GLGL ++ +DTP++RGMI+ V +V++ E Sbjct: 4 TIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAVSFMVKVEE 59 >1vq8_W 50S ribosomal protein L30P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (W:) Length = 154 Score = 50.6 bits (121), Expect = 6e-08 Identities = 11/52 (21%), Positives = 26/52 (50%) Query: 12 VQQIGSPIRRPSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVHHLVRIV 63 + Q+ + + + L L ++ +N C ++ +T + RGM++ V+ V Sbjct: 4 LVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFG 55 >3jyw_F 60S ribosomal protein L7(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_F (F:20-213) Length = 194 Score = 30.3 bits (68), Expect = 0.094 Identities = 12/53 (22%), Positives = 21/53 (39%) Query: 12 VQQIGSPIRRPSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVHHLVRIVE 64 V +I + P RKVL L L ++N + T + ++ + V Sbjct: 36 VVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGY 88 >3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2; 2.10A {Herpetosiphon aurantiacus atcc 23779} (A:1-135,A:300-365) Length = 201 Score = 24.2 bits (52), Expect = 7.1 Identities = 7/22 (31%), Positives = 11/22 (50%) Query: 1 MSSSLKMQKITVQQIGSPIRRP 22 MS +Q I+ + I P+ P Sbjct: 1 MSLPTTIQAISAEAINLPLTEP 22 >3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp} (A:1-128,A:358-381) Length = 152 Score = 24.0 bits (51), Expect = 7.4 Identities = 6/22 (27%), Positives = 11/22 (50%) Query: 1 MSSSLKMQKITVQQIGSPIRRP 22 MS + +++I + P RP Sbjct: 1 MSLTATVEQIESWIVDVPTIRP 22 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.323 0.136 0.377 Gapped Lambda K H 0.267 0.0593 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 464,270 Number of extensions: 14738 Number of successful extensions: 51 Number of sequences better than 10.0: 1 Number of HSP's gapped: 51 Number of HSP's successfully gapped: 8 Length of query: 64 Length of database: 4,956,049 Length adjustment: 32 Effective length of query: 32 Effective length of database: 3,874,289 Effective search space: 123977248 Effective search space used: 123977248 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 50 (23.3 bits)