RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780243|ref|YP_003064656.1| 50S ribosomal protein L30 [Candidatus Liberibacter asiaticus str. psy62] (64 letters) >d1bxya_ d.59.1.1 (A:) Prokaryotic ribosomal protein L30 {Thermus thermophilus [TaxId: 274]} Length = 60 Score = 71.5 bits (176), Expect = 2e-14 Identities = 24/58 (41%), Positives = 37/58 (63%) Query: 7 MQKITVQQIGSPIRRPSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVHHLVRIVE 64 M ++ V+ + SPI P Q+ L LGL ++ + RVL+DTP++RG + V HLVR+ Sbjct: 1 MPRLKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVEV 58 >d2gycx1 d.59.1.1 (X:3-58) Prokaryotic ribosomal protein L30 {Escherichia coli [TaxId: 562]} Length = 56 Score = 68.0 bits (167), Expect = 2e-13 Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 10 ITVQQIGSPIRRPSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVHHLVRIVE 64 I + Q S I R + L+GLGL ++ +DTP++RGMI+ V +V++ E Sbjct: 2 IKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAVSFMVKVEE 56 >d2zjrw1 d.59.1.1 (W:1-55) Prokaryotic ribosomal protein L30 {Deinococcus radiodurans [TaxId: 1299]} Length = 55 Score = 67.6 bits (166), Expect = 3e-13 Identities = 23/55 (41%), Positives = 34/55 (61%) Query: 10 ITVQQIGSPIRRPSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVHHLVRIVE 64 + ++ + S I RP Q K + LGL K+ R + DTP+VRGM+ TV HL+ + E Sbjct: 1 MKIKLVRSVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRGMVKTVKHLLEVQE 55 >d1vqow1 d.59.1.1 (W:1-154) Archaeal L30 (L30a) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 154 Score = 57.5 bits (139), Expect = 3e-10 Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Query: 7 MQKITVQQIGSPIRRPSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVHHLV 60 M + Q+ + + + L L ++ +N C ++ +T + RGM++ V+ V Sbjct: 1 MHALV--QLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFV 52 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.323 0.136 0.377 Gapped Lambda K H 0.267 0.0772 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 220,820 Number of extensions: 7288 Number of successful extensions: 16 Number of sequences better than 10.0: 1 Number of HSP's gapped: 16 Number of HSP's successfully gapped: 4 Length of query: 64 Length of database: 2,407,596 Length adjustment: 33 Effective length of query: 31 Effective length of database: 1,954,506 Effective search space: 60589686 Effective search space used: 60589686 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 47 (21.8 bits)