RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780243|ref|YP_003064656.1| 50S ribosomal protein L30
[Candidatus Liberibacter asiaticus str. psy62]
         (64 letters)



>d1bxya_ d.59.1.1 (A:) Prokaryotic ribosomal protein L30 {Thermus
          thermophilus [TaxId: 274]}
          Length = 60

 Score = 71.5 bits (176), Expect = 2e-14
 Identities = 24/58 (41%), Positives = 37/58 (63%)

Query: 7  MQKITVQQIGSPIRRPSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVHHLVRIVE 64
          M ++ V+ + SPI  P  Q+  L  LGL ++ + RVL+DTP++RG +  V HLVR+  
Sbjct: 1  MPRLKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVEV 58


>d2gycx1 d.59.1.1 (X:3-58) Prokaryotic ribosomal protein L30
          {Escherichia coli [TaxId: 562]}
          Length = 56

 Score = 68.0 bits (167), Expect = 2e-13
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 10 ITVQQIGSPIRRPSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVHHLVRIVE 64
          I + Q  S I R    +  L+GLGL ++      +DTP++RGMI+ V  +V++ E
Sbjct: 2  IKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAVSFMVKVEE 56


>d2zjrw1 d.59.1.1 (W:1-55) Prokaryotic ribosomal protein L30
          {Deinococcus radiodurans [TaxId: 1299]}
          Length = 55

 Score = 67.6 bits (166), Expect = 3e-13
 Identities = 23/55 (41%), Positives = 34/55 (61%)

Query: 10 ITVQQIGSPIRRPSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVHHLVRIVE 64
          + ++ + S I RP  Q K +  LGL K+   R + DTP+VRGM+ TV HL+ + E
Sbjct: 1  MKIKLVRSVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRGMVKTVKHLLEVQE 55


>d1vqow1 d.59.1.1 (W:1-154) Archaeal L30 (L30a) {Archaeon
          Haloarcula marismortui [TaxId: 2238]}
          Length = 154

 Score = 57.5 bits (139), Expect = 3e-10
 Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 7  MQKITVQQIGSPIRRPSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVHHLV 60
          M  +   Q+   +   +  +  L  L ++ +N C ++ +T + RGM++ V+  V
Sbjct: 1  MHALV--QLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFV 52


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.377 

Gapped
Lambda     K      H
   0.267   0.0772    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 220,820
Number of extensions: 7288
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 4
Length of query: 64
Length of database: 2,407,596
Length adjustment: 33
Effective length of query: 31
Effective length of database: 1,954,506
Effective search space: 60589686
Effective search space used: 60589686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (21.8 bits)