Query gi|254780244|ref|YP_003064657.1| 30S ribosomal protein S5 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 199
No_of_seqs 117 out of 919
Neff 5.0
Searched_HMMs 33803
Date Tue May 24 03:22:08 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780244.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3i1m_E 30S ribosomal protein 100.0 0 0 374.4 9.8 164 14-178 3-166 (167)
2 >2vqe_E 30S ribosomal protein 100.0 0 0 339.1 14.7 142 18-160 2-143 (143)
3 >2zkq_e 40S ribosomal protein 100.0 1.4E-29 4E-34 200.4 7.2 90 87-176 1-95 (98)
4 >3jyv_E 40S ribosomal protein 99.9 1.1E-26 3.1E-31 182.7 4.4 82 88-169 1-86 (88)
5 >1pkp_A Ribosomal protein S5; 99.9 1.4E-25 4.3E-30 175.8 8.0 72 91-162 1-72 (72)
6 >3bbn_E Ribosomal protein S5; 99.9 7.7E-25 2.3E-29 171.4 6.4 77 14-90 144-220 (220)
7 >3jyv_E 40S ribosomal protein 99.9 4.1E-24 1.2E-28 167.0 8.1 73 21-93 1-73 (74)
8 >3bbn_E Ribosomal protein S5; 99.9 4.1E-25 1.2E-29 173.1 2.8 68 92-159 2-69 (69)
9 >1pkp_A Ribosomal protein S5; 99.9 6.4E-24 1.9E-28 165.8 7.0 75 14-88 3-77 (78)
10 >2zkq_e 40S ribosomal protein 99.9 1.7E-23 5.1E-28 163.2 7.7 72 18-89 6-77 (81)
11 >1h2i_A RAD52, DNA repair prot 50.8 17 0.00052 16.8 7.3 62 18-79 13-80 (95)
12 >1p42_A UDP-3-O-[3-hydroxymyri 49.9 9.9 0.00029 18.3 2.0 55 103-157 22-110 (119)
13 >1u7n_A Fatty acid/phospholipi 46.9 12 0.00036 17.8 2.1 30 129-158 126-155 (173)
14 >2ves_A UDP-3-O-[3-hydroxymyri 46.8 12 0.00035 17.9 2.0 72 98-169 16-133 (153)
15 >1c8c_A DNA-binding protein 7A 40.4 18 0.00053 16.8 2.1 45 23-71 11-55 (64)
16 >1w5f_A Cell division protein 32.1 15 0.00045 17.2 0.7 37 52-88 18-64 (138)
17 >3go2_A Putative L-alanine-DL- 31.8 18 0.00054 16.7 1.1 56 43-98 18-73 (139)
18 >1xi4_A Clathrin heavy chain; 29.9 24 0.0007 16.0 1.4 34 134-167 3-39 (49)
19 >1rq2_A Cell division protein 29.1 22 0.00064 16.3 1.1 39 52-90 16-64 (177)
20 >1vz0_A PARB, chromosome parti 28.9 39 0.0012 14.7 5.0 37 142-178 18-54 (59)
21 >2nql_A AGR_PAT_674P, isomeras 26.8 43 0.0013 14.5 3.8 40 43-82 50-89 (156)
22 >1wvl_A DNA-binding proteins 7 24.8 46 0.0014 14.2 4.0 45 23-72 11-55 (80)
23 >2b7t_A Double-stranded RNA-sp 24.6 47 0.0014 14.2 3.3 48 34-86 26-73 (73)
24 >1sr9_A 2-isopropylmalate synt 23.7 49 0.0014 14.1 2.8 33 52-84 68-100 (100)
25 >3dcl_A TM1086; SAD, structura 23.3 42 0.0013 14.5 1.7 21 45-65 39-59 (89)
26 >2vxy_A FTSZ, cell division pr 22.4 52 0.0015 13.9 2.1 39 51-89 16-64 (178)
27 >1dc1_A Bsobi restriction endo 22.2 23 0.00068 16.1 0.1 50 147-196 4-53 (82)
28 >1t4n_A Ribonuclease III; DSRB 21.2 55 0.0016 13.8 3.0 47 37-87 32-78 (94)
No 1
>>3i1m_E 30S ribosomal protein S5; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_E* 1vs5_E 3i1o_E 3i1q_E 3i1s_E 3i1z_E 3i21_E 2qal_E* 1p6g_E 1p87_E 2aw7_E 2avy_E 2i2u_E 2i2p_E* 2qan_E* 2qb9_E* 2qbb_E* 2qbd_E 2qbf_E 2qbh_E* ... (E:)
Probab=100.00 E-value=0 Score=374.43 Aligned_cols=164 Identities=46% Similarity=0.735 Sum_probs=159.5
Q ss_pred HHCCCCCCCEEEEEEECCCCEECCCCEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEEEECCCCCCC
Q ss_conf 10000116021000022444012787384679999980899838997047442478999999999630125220166876
Q gi|254780244|r 14 NREERDNSIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMISVSLLDGRTL 93 (199)
Q Consensus 14 ~~~~~~~~l~ekvi~v~RV~k~tkgGr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli~V~~~~~~TI 93 (199)
+.|...++|+|+||+|+||+|||++||++||+|||+|||+||++|||.|||.|+++|++||..+|++||++||+.+ +||
T Consensus 3 ~~d~~~~~l~~~vl~i~rV~k~T~~Gr~~~f~alvvvGn~nG~vG~G~gka~ev~~Ai~kA~~~A~~nl~~V~~~~-~Ti 81 (167)
T 3i1m_E 3 HIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNN-GTL 81 (167)
T ss_dssp -------CCCEEEEEEEEEECCBTTBCCEEEEEEEEEECSSSCEEEECCEESSHHHHHHHHHHHHHSSEECCCCBT-TBC
T ss_pred CCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHEEEECCC-CCC
T ss_conf 5013455600178988524457058862168999999679987875111176589999999999985412551335-623
Q ss_pred CEECCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCH
Q ss_conf 20011033767999963675448503048999999809441004546898888999999999950699899998619979
Q gi|254780244|r 94 HHDGVGRHGAGKVIMRSAMAGTGVIAGGAIRAVCEVLGMHDVVAKSIGSSNPHNVIRATFEVLRSQSHPRDVANRRGIKH 173 (199)
Q Consensus 94 ~h~v~gk~g~~kV~l~Pap~G~Gi~a~~~vr~il~laGI~dv~aK~~GS~N~~NvvkAt~~AL~~~~t~~~iA~~RG~~i 173 (199)
||+++++|++++|+|+|||+|+||+||+.+++||+++||+|+++|++||+||+|+++|||+||++++||+++|+.||+++
T Consensus 82 ~~~v~gk~~~~~v~l~pap~G~Gl~~~~~i~~il~laGI~dv~~K~~Gs~n~~n~vkA~~~aL~~~~t~~~ia~~rg~~~ 161 (167)
T 3i1m_E 82 QHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSV 161 (167)
T ss_dssp SSCEEEEETTEEEEEECCCCSSSCBCCSSSSSHHHHHTCCSCEEEEEECCCHHHHHHHTHHHHHSCCCSTTTTTTTTC--
T ss_pred CCCCCEEECCCEEEEEECCCCCCEEECHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCH
T ss_conf 24464355362379972479865078747777888816010212115789788999999999983899999999809969
Q ss_pred HHHHH
Q ss_conf 89445
Q gi|254780244|r 174 SLLQA 178 (199)
Q Consensus 174 ~~~~~ 178 (199)
+|+..
T Consensus 162 ~e~~~ 166 (167)
T 3i1m_E 162 EEILG 166 (167)
T ss_dssp -----
T ss_pred HHHCC
T ss_conf 99617
No 2
>>2vqe_E 30S ribosomal protein S5; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (E:1-143)
Probab=100.00 E-value=0 Score=339.05 Aligned_cols=142 Identities=42% Similarity=0.686 Sum_probs=139.1
Q ss_pred CCCCCEEEEEEECCCCEECCCCEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEEEECCCCCCCCEEC
Q ss_conf 01160210000224440127873846799999808998389970474424789999999996301252201668762001
Q gi|254780244|r 18 RDNSIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMISVSLLDGRTLHHDG 97 (199)
Q Consensus 18 ~~~~l~ekvi~v~RV~k~tkgGr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli~V~~~~~~TI~h~v 97 (199)
..++|+|+||+|+||+|||++||++||+|||+|||+||++|||+||+.|+++|++||.++|++||++|+++++ ||||++
T Consensus 2 ~~~~l~~~vl~v~rv~k~Tk~Gr~~~f~alvvvGn~~G~vG~G~gK~~e~~~Ai~kA~~~A~~nl~~V~~~~~-Ti~~~v 80 (143)
T 2vqe_E 2 PETDFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRNMVEVPLQNG-TIPHEI 80 (143)
T ss_dssp ---CCEEEEEEEEEEEEEETTEEEEEEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHHTTSEEECCCSTT-SCSSCE
T ss_pred CCCCCEEEEEEEEEEEEEECCCCEEEEEEEEEECCCCCCEEECCCCCCCCHHHHHHHHHHHHCCEEEEECCCC-CCCEEE
T ss_conf 7326305889997466670489526799999983798535462113666478999999975088799955576-040886
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHCCC
Q ss_conf 103376799996367544850304899999980944100454689888899999999995069
Q gi|254780244|r 98 VGRHGAGKVIMRSAMAGTGVIAGGAIRAVCEVLGMHDVVAKSIGSSNPHNVIRATFEVLRSQS 160 (199)
Q Consensus 98 ~gk~g~~kV~l~Pap~G~Gi~a~~~vr~il~laGI~dv~aK~~GS~N~~NvvkAt~~AL~~~~ 160 (199)
+++|++++|+|+|+|+|+||+||+.+++||+++||+||++|++||+||+|+++|||+||.+|+
T Consensus 81 ~gk~~s~~v~l~p~p~G~Gl~~~~~i~~il~laGI~dv~~k~~Gs~n~~n~vkA~~~aL~~~~ 143 (143)
T 2vqe_E 81 EVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGSRNPINIAYATMEALRQLR 143 (143)
T ss_dssp EEEETTEEEEEEECCTTSCEESCHHHHHHHHTTTCCSEEEEEEECCCHHHHHHHHHHHHHHCC
T ss_pred EEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 665242279998545566653317889999880722442328899988999999999998179
No 3
>>2zkq_e 40S ribosomal protein S2E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (e:82-179)
Probab=99.96 E-value=1.4e-29 Score=200.36 Aligned_cols=90 Identities=20% Similarity=0.233 Sum_probs=83.7
Q ss_pred CCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCH-HHHHHHHHHHHHCC---CCH
Q ss_conf 01668762001103376799996367544850304899999980944100454689888-89999999999506---998
Q gi|254780244|r 87 LLDGRTLHHDGVGRHGAGKVIMRSAMAGTGVIAGGAIRAVCEVLGMHDVVAKSIGSSNP-HNVIRATFEVLRSQ---SHP 162 (199)
Q Consensus 87 ~~~~~TI~h~v~gk~g~~kV~l~Pap~G~Gi~a~~~vr~il~laGI~dv~aK~~GS~N~-~NvvkAt~~AL~~~---~t~ 162 (199)
++++|||||+++||||+++|+|+|||+|+||+||+.+|.||+++||+|+++|++||+|+ +|+++|||+||+++ +||
T Consensus 1 l~e~~TIph~v~gk~gs~~v~l~PAp~G~Gl~ag~~ir~ilelaGIkDv~aK~~Gstn~~~Nv~kAt~~aL~~~~~~~tp 80 (98)
T 2zkq_e 1 IGKPHTVPCKVTGRSGSVPVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTP 80 (98)
T ss_dssp CCBCSSCSSCEEEEETTEEEEEEECCTTCCEECCTTHHHHHHHHTCCCEEEEECSSCCCHHHHHHHHHHHHHHCCC----
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCCCCCCEECCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCH
T ss_conf 68896389999999896888986488746647270789998762205388874589897889999999999972535788
Q ss_pred HHHHHHCCCC-HHHH
Q ss_conf 9999861997-9894
Q gi|254780244|r 163 RDVANRRGIK-HSLL 176 (199)
Q Consensus 163 ~~iA~~RG~~-i~~~ 176 (199)
+++|+.||++ +.++
T Consensus 81 ~~~a~~rg~k~v~~~ 95 (98)
T 2zkq_e 81 DLWKETVFTKSPYQE 95 (98)
T ss_dssp ---------------
T ss_pred HHHHHCCCCCCCCCC
T ss_conf 897321467895502
No 4
>>3jyv_E 40S ribosomal protein S2; eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_E (E:75-162)
Probab=99.93 E-value=1.1e-26 Score=182.74 Aligned_cols=82 Identities=23% Similarity=0.382 Sum_probs=76.0
Q ss_pred CCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCH-HHHHHHHHHHHHCCCC---HH
Q ss_conf 1668762001103376799996367544850304899999980944100454689888-8999999999950699---89
Q gi|254780244|r 88 LDGRTLHHDGVGRHGAGKVIMRSAMAGTGVIAGGAIRAVCEVLGMHDVVAKSIGSSNP-HNVIRATFEVLRSQSH---PR 163 (199)
Q Consensus 88 ~~~~TI~h~v~gk~g~~kV~l~Pap~G~Gi~a~~~vr~il~laGI~dv~aK~~GS~N~-~NvvkAt~~AL~~~~t---~~ 163 (199)
.++|||||+++|+||+++|+|+|||+|+||+|++.++.|||++||+||++|++||+|+ +|+++|||+||++++| |+
T Consensus 1 ge~~TIph~v~gk~gs~~v~l~Pap~G~Giva~~~~r~vlelaGI~D~~~k~~Gstn~~~N~~kAtf~aL~~~~s~~tp~ 80 (88)
T 3jyv_E 1 GQPHSLATKTTGKCGSVTVRLIPAPRGSGIVASPAVKKLLQLAGVEDVYTQSNGKTRTLENTLKAAFVAIGNTYGFLTPN 80 (88)
T ss_dssp SBTTSCSSCCEEESSSEEEEEEECCTTCCBCCCTTTHHHHHHHTCCSEEEEEEECCCTTTHHHHHHHTTSSBSSSCCCSS
T ss_pred CCCEEEEEEEEEEECCEEEEEECCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 99828999998787436999944999847536708999998669655887636788966489999999999746369989
Q ss_pred HHHHHC
Q ss_conf 999861
Q gi|254780244|r 164 DVANRR 169 (199)
Q Consensus 164 ~iA~~R 169 (199)
++++.|
T Consensus 81 ~~~~~r 86 (88)
T 3jyv_E 81 LWAEQP 86 (88)
T ss_dssp HHHHSS
T ss_pred HHHHCC
T ss_conf 997668
No 5
>>1pkp_A Ribosomal protein S5; 2.80A {Geobacillus stearothermophilus} (A:79-150)
Probab=99.92 E-value=1.4e-25 Score=175.83 Aligned_cols=72 Identities=47% Similarity=0.820 Sum_probs=70.2
Q ss_pred CCCCEECCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCH
Q ss_conf 876200110337679999636754485030489999998094410045468988889999999999506998
Q gi|254780244|r 91 RTLHHDGVGRHGAGKVIMRSAMAGTGVIAGGAIRAVCEVLGMHDVVAKSIGSSNPHNVIRATFEVLRSQSHP 162 (199)
Q Consensus 91 ~TI~h~v~gk~g~~kV~l~Pap~G~Gi~a~~~vr~il~laGI~dv~aK~~GS~N~~NvvkAt~~AL~~~~t~ 162 (199)
.||||+++++||+++|+|+|||+|+||+|++.++.|||++||+|+++|++||+|++|+++|||+||++++|.
T Consensus 1 ~TI~h~v~gk~gs~~v~l~Pap~G~Gl~a~~~vr~ilelaGi~Di~~k~~Gs~n~~N~~kAt~~aL~~~~sa 72 (72)
T 1pkp_A 1 TTIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPINMVRATFDGLKQLKRA 72 (72)
T ss_dssp TBCSSCEEEEETTEEEEEEECCTTCCEESCHHHHHHHHHHTCCSEEEEECSCCSHHHHHHHHHHHHHHCC--
T ss_pred CCCCEEEEEEECCEEEEEEECCCCCCEEECHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 976788999978587999853688324826188999997391404311577896899999999999974339
No 6
>>3bbn_E Ribosomal protein S5; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (E:1-220)
Probab=99.91 E-value=7.7e-25 Score=171.39 Aligned_cols=77 Identities=35% Similarity=0.603 Sum_probs=72.7
Q ss_pred HHCCCCCCCEEEEEEECCCCEECCCCEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEEEECCCC
Q ss_conf 10000116021000022444012787384679999980899838997047442478999999999630125220166
Q gi|254780244|r 14 NREERDNSIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMISVSLLDG 90 (199)
Q Consensus 14 ~~~~~~~~l~ekvi~v~RV~k~tkgGr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli~V~~~~~ 90 (199)
..+...++|.++||+|+||+|||++||+++|+|||||||+||+||||+|||.|+.+||+||+++|++||++|+||+.
T Consensus 144 ~~~~~~~~l~~~vl~i~rV~k~t~~Gr~~~f~alvvvGn~nG~vG~G~gKa~e~~~Ai~kA~~~A~~nl~~V~r~e~ 220 (220)
T 3bbn_E 144 KKEKIRDGFEENVVQVRRVTKVVKGGKHMRFRAIVVVGDKKGQVGVGVGKAKEVVSAVQKAAVDARRNIITVPMTKY 220 (220)
T ss_dssp -------CCEEEEEEEECCEEEETTEEEECCEEEEEEECSSSEEEEEEEECSSHHHHHHHHHHTTTTSCEECCCCSS
T ss_pred CCCCCCCCCEEEEEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 35455667204788785033142588741589999996699978578774464899999999999987656520058
No 7
>>3jyv_E 40S ribosomal protein S2; eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_E (E:1-74)
Probab=99.90 E-value=4.1e-24 Score=167.00 Aligned_cols=73 Identities=32% Similarity=0.411 Sum_probs=71.1
Q ss_pred CCEEEEEEECCCCEECCCCEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEEEECCCCCCC
Q ss_conf 6021000022444012787384679999980899838997047442478999999999630125220166876
Q gi|254780244|r 21 SIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMISVSLLDGRTL 93 (199)
Q Consensus 21 ~l~ekvi~v~RV~k~tkgGr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli~V~~~~~~TI 93 (199)
.|+|++|+|+||+|||++||++||+|||+|||+||+||||+||+.|+++||+||..+|++||++|||++++|.
T Consensus 1 ~l~~~vl~i~rV~k~T~~Gr~~~f~alvvvGn~~G~vG~G~gKa~e~~~Ai~kA~~~A~~nl~~V~r~~~~t~ 73 (74)
T 3jyv_E 1 GLQDEVMNIKPVQKQTRAGQRTRFKAVVVVGDSNGHVGLGIKTAKEVAGAIRAGIIIAKLSVIPIRRGYWGTN 73 (74)
T ss_dssp CCEEEEEEEECCEEECSSSEEECEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTTSEEEBCBSBSSSB
T ss_pred CCCEEEEEEEEEEEEECCCCEEEEEEEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHCEEEECCCCCCCC
T ss_conf 9722899985443480489527789999995289867403022453688999999999740445002334567
No 8
>>3bbn_E Ribosomal protein S5; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (E:221-289)
Probab=99.90 E-value=4.1e-25 Score=173.09 Aligned_cols=68 Identities=41% Similarity=0.656 Sum_probs=67.1
Q ss_pred CCCEECCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHCC
Q ss_conf 76200110337679999636754485030489999998094410045468988889999999999506
Q gi|254780244|r 92 TLHHDGVGRHGAGKVIMRSAMAGTGVIAGGAIRAVCEVLGMHDVVAKSIGSSNPHNVIRATFEVLRSQ 159 (199)
Q Consensus 92 TI~h~v~gk~g~~kV~l~Pap~G~Gi~a~~~vr~il~laGI~dv~aK~~GS~N~~NvvkAt~~AL~~~ 159 (199)
||||++++||++++|+|+|||+|+||+||+.+|.|||++||+|+++|++||+|++|+++|||+||+++
T Consensus 2 TIph~v~gk~gs~~v~l~Pap~G~Glia~~~~r~ilelaGIkDv~~k~~GS~n~~N~~kAtf~aL~~l 69 (69)
T 3bbn_E 2 TFPHRNEADYGAARVMLRPAAPGTGVIAGGAVRTVLEMAGVENALGKQLGSNNALNNARATIVAVQTM 69 (69)
T ss_dssp BCSSCEEEEETTEEEEEEECCTTCCEECCTTTHHHHTTTTCCBEEEEEEECCCTTTTTTHHHHHHHTC
T ss_pred CCCEECCEEEECEEEEEECCCCCCCEECCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 65500124650225777058999650067599999997693606765577776888999999999835
No 9
>>1pkp_A Ribosomal protein S5; 2.80A {Geobacillus stearothermophilus} (A:1-78)
Probab=99.90 E-value=6.4e-24 Score=165.79 Aligned_cols=75 Identities=48% Similarity=0.789 Sum_probs=72.1
Q ss_pred HHCCCCCCCEEEEEEECCCCEECCCCEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEEEECC
Q ss_conf 100001160210000224440127873846799999808998389970474424789999999996301252201
Q gi|254780244|r 14 NREERDNSIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMISVSLL 88 (199)
Q Consensus 14 ~~~~~~~~l~ekvi~v~RV~k~tkgGr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli~V~~~ 88 (199)
..+...++|+|++|+|+||||||++||++||+|||+|||+||+||||.|||.|+++||+||.++|++||++||+.
T Consensus 3 ~~d~~~~~l~~~vl~i~rV~k~tk~Gr~~~f~alvvvGn~~G~vG~G~gKa~ev~~Ai~kA~~~Ak~nl~~V~l~ 77 (78)
T 1pkp_A 3 RINPNKLELEERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLIEVPIV 77 (78)
T ss_dssp -CCGGGSCCEEEEEEEECSSSBCSSCCSSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHHTTSCEECCCB
T ss_pred CCCCCCCCCEEEEEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHCEEEEECC
T ss_conf 557775762068999965545840883478999999966998786605635667999999999998261388212
No 10
>>2zkq_e 40S ribosomal protein S2E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (e:1-81)
Probab=99.89 E-value=1.7e-23 Score=163.17 Aligned_cols=72 Identities=28% Similarity=0.390 Sum_probs=69.4
Q ss_pred CCCCCEEEEEEECCCCEECCCCEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEEEECCC
Q ss_conf 011602100002244401278738467999998089983899704744247899999999963012522016
Q gi|254780244|r 18 RDNSIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMISVSLLD 89 (199)
Q Consensus 18 ~~~~l~ekvi~v~RV~k~tkgGr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli~V~~~~ 89 (199)
..++|+|++|+|+||+|||++||++||+|||+|||+||+||||+||+.|+++||+||.++|++||++||+.+
T Consensus 6 ~~~~l~~~vl~i~rV~k~t~~Gr~~~f~alvvvGn~~G~vG~G~gK~~ev~~Ai~kA~~~A~~nl~~V~Rg~ 77 (81)
T 2zkq_e 6 LGASLKDEVLKIVPVQKQTRAGQRTRFKAFVAIGDHNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY 77 (81)
T ss_dssp ---CCEEEEEEEECCCCBCSSCBCCCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHHHHSEEECC-BC
T ss_pred CCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHCCEEECCCC
T ss_conf 487761378987132137238961678999998169876742002376533789988987751635751466
No 11
>>1h2i_A RAD52, DNA repair protein RAD52 homolog; DNA-binding protein, DNA recombination; HET: DNA; 2.7A {Homo sapiens} (A:68-162)
Probab=50.80 E-value=17 Score=16.83 Aligned_cols=62 Identities=21% Similarity=0.161 Sum_probs=42.4
Q ss_pred CCCCCEEEEEEECCCCEECC-CCEEEEEEEEEEECCCCCC----EEEEECCC-CCHHHHHHHHHHHHH
Q ss_conf 01160210000224440127-8738467999998089983----89970474-424789999999996
Q gi|254780244|r 18 RDNSIVDRIVAINRVSTALP-GGRRFAFSVLVVVGDTKSK----VGFAHSTA-REVPEAVRKATEAAK 79 (199)
Q Consensus 18 ~~~~l~ekvi~v~RV~k~tk-gGr~~sf~alvvvGn~~G~----vG~G~GKa-~ev~~Ai~KA~~~Ak 79 (199)
-..+|...++.+.-...-.. +-....|.|.|=|==.+|. +|+|.... ++-..|+.||.+.|.
T Consensus 13 GFnGWS~~I~~~~~~~~de~~~k~~v~~~~~Vrvtlkdgt~~e~~G~G~~~~~~~k~~a~~kaKKeAv 80 (95)
T 1h2i_A 13 GYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEAV 80 (95)
T ss_dssp CTTTEEEEEEEEEEEEEEESSSSEEEEEEEEEEEEETTSCEEEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEEEEECCCCCCCEEEEEEEEEEEEEECCEEEECCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 88853303367763103677654048999999999966669854556656775653210788987645
No 12
>>1p42_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; alpha+beta fold, hydrophobic tunnel, hydrolase; HET: MYR; 2.00A {Aquifex aeolicus} (A:1-119)
Probab=49.91 E-value=9.9 Score=18.32 Aligned_cols=55 Identities=25% Similarity=0.337 Sum_probs=35.2
Q ss_pred CEEEEEEECCCCCCCCCCH--------------------------------HHHHHHHHHCCCCCCEEECCCCCHH--HH
Q ss_conf 6799996367544850304--------------------------------8999999809441004546898888--99
Q gi|254780244|r 103 AGKVIMRSAMAGTGVIAGG--------------------------------AIRAVCEVLGMHDVVAKSIGSSNPH--NV 148 (199)
Q Consensus 103 ~~kV~l~Pap~G~Gi~a~~--------------------------------~vr~il~laGI~dv~aK~~GS~N~~--Nv 148 (199)
.+++.++|||.++|++--+ -+.+-|...||.|+.-.+-|.--|+ --
T Consensus 22 ~v~v~l~Pa~~~~Gi~F~r~d~~i~a~~~~v~~t~l~T~L~~~~~~V~TVEHllAAL~~~gIDN~~Iev~g~EvPIlDGS 101 (119)
T 1p42_A 22 YSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDLGFKGQRIKTVEHILSVLHLLEITNVTIEVIGNEIPILDGS 101 (119)
T ss_dssp EEEEEEEECCTTCCEEEEETTEEEESSGGGEEECSSSCEEEETTEEEBCCHHHHHHHHHTTCCSEEEEEESSBCCCTTSS
T ss_pred EEEEEEEECCCCCEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC
T ss_conf 78999992799968999848910678686500652220231289799879999999997798059999699867778986
Q ss_pred HHHHHHHHH
Q ss_conf 999999995
Q gi|254780244|r 149 IRATFEVLR 157 (199)
Q Consensus 149 vkAt~~AL~ 157 (199)
+..++++|.
T Consensus 102 a~~fv~~i~ 110 (119)
T 1p42_A 102 GWEFYEAIR 110 (119)
T ss_dssp SHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 588998762
No 13
>>1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, enterococcus faecalis V583, PSI, protein structure initiative; HET: MSE; 2.26A {Enterococcus faecalis} (A:1-119,A:283-336)
Probab=46.88 E-value=12 Score=17.80 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=24.6
Q ss_pred HHCCCCCCEEECCCCCHHHHHHHHHHHHHC
Q ss_conf 809441004546898888999999999950
Q gi|254780244|r 129 VLGMHDVVAKSIGSSNPHNVIRATFEVLRS 158 (199)
Q Consensus 129 laGI~dv~aK~~GS~N~~NvvkAt~~AL~~ 158 (199)
+.|++-+..|.+||+|...+..|+..|...
T Consensus 126 lLGl~g~vik~HGsS~~~a~~nAi~~a~~~ 155 (173)
T 1u7n_A 126 LFGLKAPVIKTHGATGPDAVRYTIRQIHTX 155 (173)
T ss_dssp EETBSSCEEECCTTCCHHHHHHHHHHHHHH
T ss_pred EECCCCCEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 974883289758899989999999999999
No 14
>>2ves_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; LPXC, hydrolase, BB-78485, antibiotics, lipid synthesis, metalloprotease; HET: GVR; 1.90A {Pseudomonas aeruginosa} (A:1-125,A:182-189,A:229-248)
Probab=46.84 E-value=12 Score=17.85 Aligned_cols=72 Identities=19% Similarity=0.280 Sum_probs=44.8
Q ss_pred CCCCCC--EEEEEEECCCCCCCCCCH------------------------------------HHHHHHHHHCCCCCCEEE
Q ss_conf 103376--799996367544850304------------------------------------899999980944100454
Q gi|254780244|r 98 VGRHGA--GKVIMRSAMAGTGVIAGG------------------------------------AIRAVCEVLGMHDVVAKS 139 (199)
Q Consensus 98 ~gk~g~--~kV~l~Pap~G~Gi~a~~------------------------------------~vr~il~laGI~dv~aK~ 139 (199)
.|=|.+ +.+.+.|||+++||+--+ -+.+-|...||.|+.-.+
T Consensus 16 iGLHSG~~v~v~l~PA~~~tGI~F~R~Dl~~~~~I~A~~~~V~~t~l~T~L~~~~~~V~TVEHLLAAL~glGIDN~~Iei 95 (153)
T 2ves_A 16 VGLHSGEKVYLTLKPAPVDTGIVFSRTDLDPVVEIPARAENVGETTMSTTLVKGDVKVDTVEHLLSAMAGLGIDNAYVEL 95 (153)
T ss_dssp ECTTTCSEEEEEEEECCTTCCEEEEETTSSSCEEEECCGGGBCCCSSSCCEEETTEEEBCCHHHHHHHHHHTCCCEEEEE
T ss_pred EECCCCCEEEEEEEECCCCCEEEEEEECCCCCCEECCCHHHCCCCCCEEEEEECEEEEEEHHHHHHHHHHCCCEEEEEEC
T ss_conf 98357957899999899998699999059998230367888146665368641305886078889898742701799991
Q ss_pred CCCCCHH------HHHHHHHHH-HHCC-CCHHHHHHHC
Q ss_conf 6898888------999999999-9506-9989999861
Q gi|254780244|r 140 IGSSNPH------NVIRATFEV-LRSQ-SHPRDVANRR 169 (199)
Q Consensus 140 ~GS~N~~------NvvkAt~~A-L~~~-~t~~~iA~~R 169 (199)
-|.--|+ ..+.+.-+| +..| ...++++..|
T Consensus 96 dg~EiPIlDGSA~~fv~ai~~aGi~eq~~~~~~~~~~~ 133 (153)
T 2ves_A 96 SASEVPIMDGSAGPFVFLIQSAGLQEQEAAVKEVSRAR 133 (153)
T ss_dssp SSSBCCCTTSSSHHHHHHHHHHCEEEEEEEHHHTTTCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHCC
T ss_conf 68987453643189999998628731013499976223
No 15
>>1c8c_A DNA-binding protein 7A; DNA binding protein, protein-DNA interaction, protein stability, hyperthermophIle, achaeabacteria; 1.45A {Sulfolobus solfataricus} (A:)
Probab=40.35 E-value=18 Score=16.77 Aligned_cols=45 Identities=16% Similarity=0.385 Sum_probs=36.3
Q ss_pred EEEEEEECCCCEECCCCEEEEEEEEEEECCCCCCEEEEECCCCCHHHHH
Q ss_conf 2100002244401278738467999998089983899704744247899
Q gi|254780244|r 23 VDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAV 71 (199)
Q Consensus 23 ~ekvi~v~RV~k~tkgGr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai 71 (199)
+|+-++|+.+-|+.+-|+..||.. -|+||.-|-|--.-+|.|--+
T Consensus 11 eekevdiskikkvwrvgkmvsfty----ddgngktgrgavsekdapkel 55 (64)
T 1c8c_A 11 EEKQVDISKIKKVWRVGKMISFTY----DEGGGKTGRGAVSEKDAPKEL 55 (64)
T ss_dssp SEEEEEGGGEEEEEEETTEEEEEE----ECGGGCEEEEEEESTTCCHHH
T ss_pred CCEEECHHHHHHHHHHCCEEEEEE----ECCCCCCCCCCCCCCCCHHHH
T ss_conf 300302999888970233589987----169985366520555276999
No 16
>>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} (A:216-353)
Probab=32.08 E-value=15 Score=17.17 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=25.7
Q ss_pred CCCCCEEEEECCCCC-HHHHHHHHHHH---------HHHCEEEEECC
Q ss_conf 899838997047442-47899999999---------96301252201
Q gi|254780244|r 52 DTKSKVGFAHSTARE-VPEAVRKATEA---------AKRNMISVSLL 88 (199)
Q Consensus 52 n~~G~vG~G~GKa~e-v~~Ai~KA~~~---------Akknli~V~~~ 88 (199)
.+..++|+|.+++.+ +..|+++|+.. |+.-|+.|.-.
T Consensus 18 ~G~a~igiG~a~g~~ra~~Av~~Al~spLld~~i~~A~~~Lv~i~~~ 64 (138)
T 1w5f_A 18 AGAAILGIGVGKGEHRAREAAKKAMESKLIEHPVENASSIVFNITAP 64 (138)
T ss_dssp CEEEEEEEEEEESTTHHHHHHHHHHTCTTCCSCGGGCSEEEEEEEEC
T ss_pred CCEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECC
T ss_conf 96078877664387348899999985735468810386699999889
No 17
>>3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.70A {Burkholderia xenovorans LB400} PDB: 2oo6_A (A:1-110,A:381-409)
Probab=31.85 E-value=18 Score=16.71 Aligned_cols=56 Identities=11% Similarity=0.151 Sum_probs=42.0
Q ss_pred EEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEEEECCCCCCCCEECC
Q ss_conf 67999998089983899704744247899999999963012522016687620011
Q gi|254780244|r 43 AFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMISVSLLDGRTLHHDGV 98 (199)
Q Consensus 43 sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli~V~~~~~~TI~h~v~ 98 (199)
+-.++|.+=+.+|..|+|+........++..+......-++.-+..+...++..+.
T Consensus 18 ~~~viV~I~t~dG~~G~GEa~~~~~~~~~~~~l~~l~~~lig~d~~~~~~~~~~l~ 73 (139)
T 3go2_A 18 RNYHFVKLTTDEGIVGWSEFDEGFGSPGVTAVIEQLGKRLVGASVMEHERFFAEAY 73 (139)
T ss_dssp SEEEEEEEEETTCCEEEEEECSTTTCTTHHHHHHHHHHHHTTSBTTCHHHHHHHHH
T ss_pred CEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 40899999989999899883888778999999999999976999441999999999
No 18
>>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis/exocytosis complex; 7.90A {Bos taurus} (A:952-1000)
Probab=29.88 E-value=24 Score=16.03 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=26.6
Q ss_pred CCCEEECCCCCHH--HHHHHHHH-HHHCCCCHHHHHH
Q ss_conf 1004546898888--99999999-9950699899998
Q gi|254780244|r 134 DVVAKSIGSSNPH--NVIRATFE-VLRSQSHPRDVAN 167 (199)
Q Consensus 134 dv~aK~~GS~N~~--NvvkAt~~-AL~~~~t~~~iA~ 167 (199)
|+|++++...|++ .++-..+. ||.....|++|+-
T Consensus 3 ~LW~~VL~e~N~~RrqlIDQVv~tAlpEs~~pe~VS~ 39 (49)
T 1xi4_A 3 ELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSV 39 (49)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 9999984668816889999999961788798799899
No 19
>>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} (A:206-382)
Probab=29.14 E-value=22 Score=16.26 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=26.6
Q ss_pred CCCCCEEEEECCCCC-HHHHHHHHHH---------HHHHCEEEEECCCC
Q ss_conf 899838997047442-4789999999---------99630125220166
Q gi|254780244|r 52 DTKSKVGFAHSTARE-VPEAVRKATE---------AAKRNMISVSLLDG 90 (199)
Q Consensus 52 n~~G~vG~G~GKa~e-v~~Ai~KA~~---------~Akknli~V~~~~~ 90 (199)
-|..++|+|.|.+.+ +..|+++|+. .|+.-|+.|.-...
T Consensus 16 ~G~a~~g~g~a~g~~r~~~A~~~Al~spLl~~~i~~A~~~Lv~i~~~~~ 64 (177)
T 1rq2_A 16 AGTALMGIGSARGEGRSLKAAEIAINSPLLEASMEGAQGVLMSIAGGSD 64 (177)
T ss_dssp CEEEEEEEEEEESTTHHHHHHHHHHTCGGGTTCGGGCSEEEEEEEECTT
T ss_pred CCEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCC
T ss_conf 8417887777407724567899998598878885572325999989877
No 20
>>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} (A:100-158)
Probab=28.94 E-value=39 Score=14.70 Aligned_cols=37 Identities=22% Similarity=0.216 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHH
Q ss_conf 9888899999999995069989999861997989445
Q gi|254780244|r 142 SSNPHNVIRATFEVLRSQSHPRDVANRRGIKHSLLQA 178 (199)
Q Consensus 142 S~N~~NvvkAt~~AL~~~~t~~~iA~~RG~~i~~~~~ 178 (199)
--||+-.+.|+-..+....|+++||..-|++...+..
T Consensus 18 dl~p~E~a~a~~~l~~~g~s~~~iA~~~G~s~~~V~~ 54 (59)
T 1vz0_A 18 DLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVAN 54 (59)
T ss_dssp TCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 8999999999998999887299999875999999856
No 21
>>2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, PSI, nysgxrc; 1.80A {Agrobacterium tumefaciens str} (A:1-144,A:377-388)
Probab=26.77 E-value=43 Score=14.46 Aligned_cols=40 Identities=23% Similarity=0.226 Sum_probs=29.8
Q ss_pred EEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCE
Q ss_conf 6799999808998389970474424789999999996301
Q gi|254780244|r 43 AFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNM 82 (199)
Q Consensus 43 sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknl 82 (199)
+-.++|.+=..+|.+|+|.............++.+....+
T Consensus 50 ~~~~~V~i~t~dG~~G~GE~~~~~~~~~~~~~i~~~l~~~ 89 (156)
T 2nql_A 50 DRSVLVRMTTEAGTVGWGETYGIVAPGAVAALINDLLAGF 89 (156)
T ss_dssp EEEEEEEEEETTCCEEEEEEECSSCHHHHHHHHHHTHHHH
T ss_pred CCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 8639999997899989975168888599999999998998
No 22
>>1wvl_A DNA-binding proteins 7A/7B/7D, GCN4; leucine zipper, protein engineering, synchrotron radiation, thermophIle, X-RAY crystallography; 2.60A {Sulfolobus acidocaldarius} (A:)
Probab=24.81 E-value=46 Score=14.24 Aligned_cols=45 Identities=16% Similarity=0.358 Sum_probs=35.8
Q ss_pred EEEEEEECCCCEECCCCEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHH
Q ss_conf 21000022444012787384679999980899838997047442478999
Q gi|254780244|r 23 VDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVR 72 (199)
Q Consensus 23 ~ekvi~v~RV~k~tkgGr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~ 72 (199)
+|+-++++.+-|+.+-|+..||.. |.+|.-|-|--.-+|.|--+-
T Consensus 11 eekevd~skikkvwrvgkmisfty-----dd~gktgrgavsekdapkell 55 (80)
T 1wvl_A 11 EEKEVDTSKIKKVWRVGKMVSFTY-----DDNGKTGRGAVSEKDAPKELL 55 (80)
T ss_dssp EEEEEEGGGEEEEEEETTEEEEEE-----EETTEEEEEEEEGGGCCHHHH
T ss_pred CHHEECHHHHHHHHHHCCEEEEEE-----CCCCCCCCCCCCCCCCHHHHH
T ss_conf 300202999999983333589997-----689964665316553769999
No 23
>>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} (A:)
Probab=24.62 E-value=47 Score=14.22 Aligned_cols=48 Identities=19% Similarity=0.086 Sum_probs=30.5
Q ss_pred EECCCCEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEEEE
Q ss_conf 01278738467999998089983899704744247899999999963012522
Q gi|254780244|r 34 TALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMISVS 86 (199)
Q Consensus 34 k~tkgGr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli~V~ 86 (199)
..+.--....|.+-|.|++ ..+.|.|++ -..|-+.|...|.+.|...|
T Consensus 26 ~~~g~~h~~~F~~~v~v~~---~~~~g~G~S--KK~Ak~~AA~~al~~L~~lP 73 (73)
T 2b7t_A 26 SQTGPVHAPLFVMSVEVNG---QVFEGSGPT--KKKAKLHAAEKALRSFVQFP 73 (73)
T ss_dssp EEECSSSSCEEEEEEESSS---SEEEEEESS--HHHHHHHHHHHHHHHHHTCC
T ss_pred EEECCCCCCEEEEEEEECC---EEEECCCCC--HHHHHHHHHHHHHHHHHHCC
T ss_conf 7038998877999999999---987879986--89999999999999860097
No 24
>>1sr9_A 2-isopropylmalate synthase; TIM barrel, transferase; 2.00A {Mycobacterium tuberculosis} (A:545-644)
Probab=23.66 E-value=49 Score=14.10 Aligned_cols=33 Identities=18% Similarity=0.116 Sum_probs=28.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEE
Q ss_conf 899838997047442478999999999630125
Q gi|254780244|r 52 DTKSKVGFAHSTAREVPEAVRKATEAAKRNMIS 84 (199)
Q Consensus 52 n~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli~ 84 (199)
+.+|..=+|.|-+.|+..|=-+|+..|..++++
T Consensus 68 ~~~g~~~~G~G~~~DI~~AS~~A~i~alNr~~k 100 (100)
T 1sr9_A 68 PVTSKTVWGVGIAPSITTASLRAVVSAVNRAAR 100 (100)
T ss_dssp ---CEEEEEEEEESSHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCC
T ss_conf 568968999983736999999999999874339
No 25
>>3dcl_A TM1086; SAD, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 2.25A {Thermotoga maritima} (A:10-23,A:65-139)
Probab=23.25 E-value=42 Score=14.47 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=18.6
Q ss_pred EEEEEECCCCCCEEEEECCCC
Q ss_conf 999998089983899704744
Q gi|254780244|r 45 SVLVVVGDTKSKVGFAHSTAR 65 (199)
Q Consensus 45 ~alvvvGn~~G~vG~G~GKa~ 65 (199)
.|.|+-|+-+|..|+=.||..
T Consensus 39 ~A~VvSG~AKG~~G~VtGkHG 59 (89)
T 3dcl_A 39 EVIVXSGDAKGSRGFVTGKHG 59 (89)
T ss_dssp EEEECSSTTTTCEEEEEEEET
T ss_pred EEEEEECCCCCCCCEEEECCC
T ss_conf 538971246798146950368
No 26
>>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A* (A:205-382)
Probab=22.37 E-value=52 Score=13.95 Aligned_cols=39 Identities=18% Similarity=0.253 Sum_probs=25.6
Q ss_pred CCCCCCEEEEECCCCC-HHHHHHHHHH---------HHHHCEEEEECCC
Q ss_conf 0899838997047442-4789999999---------9963012522016
Q gi|254780244|r 51 GDTKSKVGFAHSTARE-VPEAVRKATE---------AAKRNMISVSLLD 89 (199)
Q Consensus 51 Gn~~G~vG~G~GKa~e-v~~Ai~KA~~---------~Akknli~V~~~~ 89 (199)
+.|..++|+|.|.+.+ +..|+++|+. .|+.-|+.|.-..
T Consensus 16 ~~G~a~~G~G~a~g~~ra~~A~~~Al~spLl~~~i~~A~~~Lvni~~~~ 64 (178)
T 2vxy_A 16 NKGSALMGIGIATGENRAAEAAKKAISSPLLEAAIDGAQGVLMNITGGT 64 (178)
T ss_dssp CSSEEEEEEEEEESTTHHHHHHHHHHTCTTSCSCGGGCSEEEEEEEECT
T ss_pred CCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCHHHCCCEEEEEEECCC
T ss_conf 7863489999962774134799998628743200221545899987788
No 27
>>1dc1_A Bsobi restriction endonuclease; protein-DNA complex, restriction endonuclease, thermophilic enzyme; HET: DNA; 1.70A {Bacillus stearothermophilus} (A:41-122)
Probab=22.16 E-value=23 Score=16.08 Aligned_cols=50 Identities=20% Similarity=0.235 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 99999999995069989999861997989445443124543101335530
Q gi|254780244|r 147 NVIRATFEVLRSQSHPRDVANRRGIKHSLLQARRVVSSKSSSYSRDSKNK 196 (199)
Q Consensus 147 NvvkAt~~AL~~~~t~~~iA~~RG~~i~~~~~~~~~~~~~~~~~~~~~~~ 196 (199)
--++|.-.+-++.++|.++-+.+++....+.+..+......--..++|.+
T Consensus 4 ~~AraLk~~as~~k~p~dll~i~dI~~~LltAaGvSdKa~~~L~~~DK~e 53 (82)
T 1dc1_A 4 ERARALKVAASVAKTPKDLLYLEDIQDALLYASGISDKAKKFLTEDDKKE 53 (82)
T ss_dssp HHHHHHHHHHTTCSSGGGGGGCGGGHHHHHHHTTCCHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHH
T ss_conf 99999999997407989985255358899886165578886488555899
No 28
>>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} (A:)
Probab=21.20 E-value=55 Score=13.80 Aligned_cols=47 Identities=17% Similarity=0.078 Sum_probs=33.1
Q ss_pred CCCEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEEEEC
Q ss_conf 787384679999980899838997047442478999999999630125220
Q gi|254780244|r 37 PGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMISVSL 87 (199)
Q Consensus 37 kgGr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli~V~~ 87 (199)
...-...|.+-|.+++.. +|.|.+..-..|-+.|.+.|..+|...+.
T Consensus 32 g~~h~~~F~~~v~i~g~~----~~~g~g~sKK~Ak~~AA~~al~~L~~~~~ 78 (94)
T 1t4n_A 32 TAVDPNSIVECRVGDGTV----LGTGVGRNIKIAGIRAAENALRDKKMLDF 78 (94)
T ss_dssp SSSCCSEEEEEECSSSCE----EEEEEESSHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCCCCCEEEEEEECCCEE----EEECCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998885789999718807----87424415889999999999971178888
Done!