HHsearch results for GI: 254780244 and protein with PDBid: 2zkq_e
>2zkq_e 40S ribosomal protein S2E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=0 Score=353.44 Aligned_cols=156 Identities=24% Similarity=0.335 Sum_probs=148.3
Q ss_pred CCCCCEEEEEEECCCCEECCCCEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEEEEC-------CCC
Q ss_conf 0116021000022444012787384679999980899838997047442478999999999630125220-------166
Q gi|254780244|r 18 RDNSIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMISVSL-------LDG 90 (199)
Q Consensus 18 ~~~~l~ekvi~v~RV~k~tkgGr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli~V~~-------~~~ 90 (199)
..++|+|+||+|+||+|||++||++||+|||+|||+||+||||.|||.|+++||+||.++|++||++|++ +++
T Consensus 6 ~~~~l~ekvl~i~rV~k~tkgGR~~~f~alVvVGn~nG~vG~G~GKa~ev~~Ai~KA~~~Ak~nli~v~~~~~~~~~~~~ 85 (179)
T 2zkq_e 6 LGASLKDEVLKIVPVQKQTRAGQRTRFKAFVAIGDHNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKP 85 (179)
T ss_dssp ---CCEEEEEEEECCCCBCSSCBCCCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHHHHSEEECC-BCCSSSCCBC
T ss_pred CCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCEEEEEEECCCCCCCCCCC
T ss_conf 48776058998853115852894578999999956987674331105757899998887653469999477655878999
Q ss_pred CCCCEECCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEECC-CCCHHHHHHHHHHHHHCCC---CHHHHH
Q ss_conf 876200110337679999636754485030489999998094410045468-9888899999999995069---989999
Q gi|254780244|r 91 RTLHHDGVGRHGAGKVIMRSAMAGTGVIAGGAIRAVCEVLGMHDVVAKSIG-SSNPHNVIRATFEVLRSQS---HPRDVA 166 (199)
Q Consensus 91 ~TI~h~v~gk~g~~kV~l~Pap~G~Gi~a~~~vr~il~laGI~dv~aK~~G-S~N~~NvvkAt~~AL~~~~---t~~~iA 166 (199)
|||||+++|||++++|+|+|||+|+||+||+.+++||+++||+|+++|++| |+|++|+++|||+||.+++ ||++++
T Consensus 86 ~TIph~v~gk~gs~kV~l~Pap~G~Glia~~~vr~il~laGIkDv~~K~~Gst~~~~NvvkAt~~AL~~~~s~~tp~~~~ 165 (179)
T 2zkq_e 86 HTVPCKVTGRSGSVPVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWK 165 (179)
T ss_dssp SSCSSCEEEEETTEEEEEEECCTTCCEECCTTHHHHHHHHTCCCEEEEECSSCCCHHHHHHHHHHHHHHCCC--------
T ss_pred CEEEEEEEEEECCEEEEEECCCCCCCEECCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 62899999998968999972799843555749999998679456988713588978899999999999735467988974
Q ss_pred HHC-CCCH
Q ss_conf 861-9979
Q gi|254780244|r 167 NRR-GIKH 173 (199)
Q Consensus 167 ~~R-G~~i 173 (199)
+.+ ++++
T Consensus 166 e~~~~~~~ 173 (179)
T 2zkq_e 166 ETVFTKSP 173 (179)
T ss_dssp --------
T ss_pred HCCCCCCC
T ss_conf 40368895