RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780244|ref|YP_003064657.1| 30S ribosomal protein S5
[Candidatus Liberibacter asiaticus str. psy62]
(199 letters)
>d2qale1 d.14.1.1 (E:78-158) Ribosomal protein S5, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 81
Score = 104 bits (262), Expect = 5e-24
Identities = 41/79 (51%), Positives = 55/79 (69%)
Query: 92 TLHHDGVGRHGAGKVIMRSAMAGTGVIAGGAIRAVCEVLGMHDVVAKSIGSSNPHNVIRA 151
TL H G H +V M+ A GTG+IAGGA+RAV EV G+H+V+AK+ GS+NP NV+RA
Sbjct: 2 TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRA 61
Query: 152 TFEVLRSQSHPRDVANRRG 170
T + L + + P VA +RG
Sbjct: 62 TIDGLENMNSPEMVAAKRG 80
>d2uube1 d.14.1.1 (E:74-154) Ribosomal protein S5, C-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 81
Score = 96.7 bits (241), Expect = 1e-21
Identities = 32/78 (41%), Positives = 45/78 (57%)
Query: 92 TLHHDGVGRHGAGKVIMRSAMAGTGVIAGGAIRAVCEVLGMHDVVAKSIGSSNPHNVIRA 151
T+ H+ GA K++++ A GTGVIAG RA+ E+ G+ D++ K +GS NP N+ A
Sbjct: 2 TIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGSRNPINIAYA 61
Query: 152 TFEVLRSQSHPRDVANRR 169
T E LR DV R
Sbjct: 62 TMEALRQLRTKADVERLR 79
>d1pkpa1 d.14.1.1 (A:78-148) Ribosomal protein S5, C-terminal domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 71
Score = 94.8 bits (236), Expect = 4e-21
Identities = 35/70 (50%), Positives = 52/70 (74%)
Query: 90 GRTLHHDGVGRHGAGKVIMRSAMAGTGVIAGGAIRAVCEVLGMHDVVAKSIGSSNPHNVI 149
G T+ H+ +G GAG++I++ A GTGVIAGG RAV E+ G+ D+++KSIGS+ P N++
Sbjct: 1 GTTIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPINMV 60
Query: 150 RATFEVLRSQ 159
RATF+ L+
Sbjct: 61 RATFDGLKQL 70
>d2uube2 d.50.1.2 (E:5-73) Ribosomal S5 protein, N-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 69
Score = 82.7 bits (205), Expect = 2e-17
Identities = 30/66 (45%), Positives = 41/66 (62%)
Query: 24 DRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMI 83
++++ I R + GGRRF F LVVVGD + +VG A EVP AV+KA A+RNM+
Sbjct: 4 EKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRNMV 63
Query: 84 SVSLLD 89
V L +
Sbjct: 64 EVPLQN 69
>d1pkpa2 d.50.1.2 (A:4-77) Ribosomal S5 protein, N-terminal domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 74
Score = 79.7 bits (197), Expect = 2e-16
Identities = 36/65 (55%), Positives = 47/65 (72%)
Query: 24 DRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMI 83
+R+VA+NRV+ + GGRR FS LVVVGD VGF A+EVPEA+RKA E AK+N+I
Sbjct: 10 ERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLI 69
Query: 84 SVSLL 88
V ++
Sbjct: 70 EVPIV 74
>d2qale2 d.50.1.2 (E:9-77) Ribosomal S5 protein, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 69
Score = 78.9 bits (195), Expect = 3e-16
Identities = 34/66 (51%), Positives = 50/66 (75%)
Query: 24 DRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMI 83
++++A+NRVS + GGR F+F+ L VVGD +VGF + AREVP A++KA E A+RNMI
Sbjct: 4 EKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMI 63
Query: 84 SVSLLD 89
+V+L +
Sbjct: 64 NVALNN 69
>d1v77a_ c.6.3.2 (A:) Ribonuclease P protein component 3, Rnp3
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 202
Score = 27.2 bits (60), Expect = 0.98
Identities = 21/158 (13%), Positives = 45/158 (28%), Gaps = 36/158 (22%)
Query: 18 RDNSIVDRIVAINR-----VSTALPGGRRFAFSVLVVV----GDTKSKVGFAHSTAREVP 68
S+V V + V + R++ V + G H A+
Sbjct: 56 PKPSLVRDTVQKFKSYLIYVESNDLRVIRYSIEKGVDAIISPWVNRKDPGIDHVLAK--- 112
Query: 69 EAVRKATEAAKRNMISVSLLDGRTLHHDGVGR----------------HGAGKVIMRSAM 112
+ +++ L+ + R + + + SA
Sbjct: 113 --------LMVKKNVALGFSLRPLLYSNPYERANLLRFMMKAWKLVEKYKVRRFLTSSAQ 164
Query: 113 AGTGVIAGGAIRAVCEVLGMHDVVAKSIGSSNPHNVIR 150
V + ++ V+GM AK+ S P +++
Sbjct: 165 EKWDVRYPRDLISLGVVIGMEIPQAKASISMYPEIILK 202
>d1icha_ a.77.1.2 (A:) Tumor necrosis factor receptor-1 death domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 26.4 bits (58), Expect = 1.6
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 124 RAVCEVLGMHDVVAKSIGSSNPHNVIRATFEVLRS--QSHPRDVANRRGIKHSLLQARRV 181
+ + LG+ D + N + A + +L + + PR A + L +
Sbjct: 17 KEFVKRLGLSDHEIDRLELQNGRCLREAQYSMLATWRRRTPRREATLELLGRVLRDMDLL 76
>d1ddfa_ a.77.1.2 (A:) Fas {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 26.5 bits (58), Expect = 1.9
Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 130 LGMHDVVAKSIGSSNPHNVIRATFEVLRSQSH-PRDVANRRGIKHSLLQARR 180
G+++ I + N + ++LR+ + L +A
Sbjct: 36 NGVNEAKIDEIKNDNVQDTAEQKVQLLRNWHQLHGKKEAYDTLIKDLKKANL 87
>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma
cruzi [TaxId: 5693]}
Length = 412
Score = 26.0 bits (55), Expect = 2.3
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 142 SSNPHNVIRATFEVLRSQSHPRDVAN 167
+ N IR + + P+ +
Sbjct: 9 AGLVFNPIRTVSDNAKPSPSPKPIIK 34
>d2mcma_ b.1.7.1 (A:) Macromycin {Streptomyces macromomyceticus
[TaxId: 1917]}
Length = 112
Score = 24.9 bits (54), Expect = 5.3
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 84 SVSLLDGRTLHHDGVG-RHGAGKVIMRSAMAGTGVIAGGAIRAVCEVLGMHDVVAKSIGS 142
+ L +G+T+ G G + + A+ GVI C+ DV A + G
Sbjct: 9 ATGLSNGQTVTVSATGLTPGTVYHVGQCAVVEPGVIG-------CDATTSTDVTADAAGK 61
Query: 143 SNPHNVIRATFE 154
+ ++F+
Sbjct: 62 ITAQLKVHSSFQ 73
>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex
aeolicus [TaxId: 63363]}
Length = 225
Score = 24.5 bits (53), Expect = 7.0
Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 4/88 (4%)
Query: 63 TAREVPEAVRKATEAAKR-NMISVSLLDGRTLHHDGVGRHGAGKVIMRSAMAGTGVIAGG 121
T E ++KA E + G ++I SA V A G
Sbjct: 126 TPYLNEEEIKKAVEICIEAGADFIKTSTG---FAPRGTTLEEVRLIKSSAKGRIKVKASG 182
Query: 122 AIRAVCEVLGMHDVVAKSIGSSNPHNVI 149
IR + + M + A IG+S+ ++
Sbjct: 183 GIRDLETAISMIEAGADRIGTSSGISIA 210
>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus
thermophilus [TaxId: 274]}
Length = 211
Score = 24.2 bits (52), Expect = 7.9
Identities = 12/50 (24%), Positives = 18/50 (36%)
Query: 95 HDGVGRHGAGKVIMRSAMAGTGVIAGGAIRAVCEVLGMHDVVAKSIGSSN 144
+++R A V A G IR L M A +G+S+
Sbjct: 156 GPRGASLEDVALLVRVAQGRAQVKAAGGIRDRETALRMLKAGASRLGTSS 205
>d1iwga3 d.58.44.1 (A:567-673) Multidrug efflux transporter AcrB
pore domain; PN1, PN2, PC1 and PC2 subdomains
{Escherichia coli [TaxId: 562]}
Length = 107
Score = 23.8 bits (51), Expect = 9.8
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 10 DNWQNREERDNSIVDRIVAINRVSTALPGGRRFAFS 45
+W +R +N + + R + + FAF+
Sbjct: 66 KDWADRPGEENKVEAITMRATRAFSQIKDAMVFAFN 101
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.129 0.359
Gapped
Lambda K H
0.267 0.0743 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 680,468
Number of extensions: 29289
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 21
Length of query: 199
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 118
Effective length of database: 1,295,466
Effective search space: 152864988
Effective search space used: 152864988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.0 bits)