BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780244|ref|YP_003064657.1| 30S ribosomal protein S5
[Candidatus Liberibacter asiaticus str. psy62]
         (199 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780244|ref|YP_003064657.1| 30S ribosomal protein S5 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 199

 Score =  399 bits (1025), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/199 (100%), Positives = 199/199 (100%)

Query: 1   MAQKERSQRDNWQNREERDNSIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFA 60
           MAQKERSQRDNWQNREERDNSIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFA
Sbjct: 1   MAQKERSQRDNWQNREERDNSIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFA 60

Query: 61  HSTAREVPEAVRKATEAAKRNMISVSLLDGRTLHHDGVGRHGAGKVIMRSAMAGTGVIAG 120
           HSTAREVPEAVRKATEAAKRNMISVSLLDGRTLHHDGVGRHGAGKVIMRSAMAGTGVIAG
Sbjct: 61  HSTAREVPEAVRKATEAAKRNMISVSLLDGRTLHHDGVGRHGAGKVIMRSAMAGTGVIAG 120

Query: 121 GAIRAVCEVLGMHDVVAKSIGSSNPHNVIRATFEVLRSQSHPRDVANRRGIKHSLLQARR 180
           GAIRAVCEVLGMHDVVAKSIGSSNPHNVIRATFEVLRSQSHPRDVANRRGIKHSLLQARR
Sbjct: 121 GAIRAVCEVLGMHDVVAKSIGSSNPHNVIRATFEVLRSQSHPRDVANRRGIKHSLLQARR 180

Query: 181 VVSSKSSSYSRDSKNKGGN 199
           VVSSKSSSYSRDSKNKGGN
Sbjct: 181 VVSSKSSSYSRDSKNKGGN 199


>gi|254780224|ref|YP_003064637.1| hypothetical protein CLIBASIA_00545 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 382

 Score = 23.5 bits (49), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 123 IRAVCEVLGMHDVVAKSIGSSNPHNVIRATFEV--LRSQSHPRDVANRRGI 171
           +++VC VL    +V KSI       +   +  V  L   SH RDV   R +
Sbjct: 188 MKSVCNVLSQSKIVQKSITFRRTQILFEESMRVGILEMISHVRDVQALREL 238


>gi|254781169|ref|YP_003065582.1| ascorbate-specific PTS system enzyme IIC/IIB [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 461

 Score = 22.3 bits (46), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 10/43 (23%), Positives = 23/43 (53%)

Query: 17  ERDNSIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGF 59
           ++  +I+ +I  I+ +  ++     F FS +  +GD  + VG+
Sbjct: 64  KKSKAIITKISVIHHIDGSIIDPYVFMFSCITSLGDKYNFVGY 106


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.316    0.129    0.359 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,008
Number of Sequences: 1233
Number of extensions: 4196
Number of successful extensions: 10
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 4
length of query: 199
length of database: 328,796
effective HSP length: 70
effective length of query: 129
effective length of database: 242,486
effective search space: 31280694
effective search space used: 31280694
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)