HHsearch alignment for GI: 254780245 and conserved domain: TIGR03632

>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=96.23  E-value=0.1  Score=31.09  Aligned_cols=84  Identities=23%  Similarity=0.265  Sum_probs=63.0

Q ss_pred             EEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-EECCC-CCCCHHHH
Q ss_conf             99996387099999962797599998502100000134686678999999999999997799799-98389-86312259
Q gi|254780245|r   29 LSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKVGVKSV-YFDRG-KHLYCGRI  106 (120)
Q Consensus        29 L~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~ia~r~~~~gI~~v-~FDR~-g~~yHGrv  106 (120)
T Consensus         3 ~hI~~s~NNTiit~T-d~~Gn~~~~~S~G~~gfKg~rK--~T~~Aa~~aa~~~~~~~~~~gi~~v~V~ikG~G~---Gr~   76 (108)
T TIGR03632         3 AHIHATFNNTIVTIT-DPQGNVLSWASAGAVGFKGSKK--STPYAAQLAAEDAAKKAKEFGMKTVDVYVKGPGA---GRE   76 (108)
T ss_pred             EEEEECCCCEEEEEE-CCCCCEEEEEECCCEECCCCCC--CCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC---CHH
T ss_conf             999935787899998-7999999999477333277655--8889999999999999997096199999968997---479


Q ss_pred             HHHHHHHHHCCCC
Q ss_conf             9999999965878
Q gi|254780245|r  107 AALADAVRKGGVS  119 (120)
Q Consensus       107 ka~ad~~R~~Gl~  119 (120)
T Consensus        77 ~-air~l~~~glk   88 (108)
T TIGR03632        77 S-AIRALQAAGLE   88 (108)
T ss_pred             H-HHHHHHHCCCE
T ss_conf             9-99999988988