HHsearch alignment of GI: 254780245 and MMDB domain: 1vq8_N_
>1vq8_N (N:) 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui}
Probab=99.97 E-value=7.7e-31 Score=203.29 Aligned_cols=99 Identities=24% Similarity=0.279 Sum_probs=94.8
Q ss_pred CCCCCCEEEEEEECCCEEEEEE--ECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 7878824999963870999999--62797599998502100000134686678999999999999997799799983898
Q gi|254780245|r 22 VSRGRLRLSVCRSSKHIYGQII--DDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKVGVKSVYFDRGK 99 (120)
Q Consensus 22 ~~~~~pRL~V~rSnkhiyAQiI--dd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~ia~r~~~~gI~~v~FDR~g 99 (120)
....+|||+|++||+||||||| ||.+++|||||||.|+.+.+.+.+++|++||+.+|.++|++++++||.+++||+|+
T Consensus 28 ~~~~k~RLvVr~TNr~i~aQIv~~d~~gd~vlasAsS~El~~~g~~~~~~N~~AAy~vG~llA~Ral~~gi~~~vlD~G~ 107 (187)
T 1vq8_N 28 LKSGKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLDIGL 107 (187)
T ss_dssp HTTCSCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGGGGTCCSCSSSHHHHHHHHHHHHHHHHHTTCCBCEEECTT
T ss_pred HCCCCCEEEEEEECCCEEEEEEEECCCCCEEEEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 51899769999947807999998338999799998711355522215862778999999999999985035605873177
Q ss_pred C--CCHHHHHHHHHHHHHCCCCC
Q ss_conf 6--31225999999999658789
Q gi|254780245|r 100 H--LYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 100 ~--~yHGrvka~ad~~R~~Gl~F 120 (120)
+ .|||||+||+++++|+||+|
T Consensus 108 ~~~~~ggrV~A~~kga~d~Gl~i 130 (187)
T 1vq8_N 108 NSPTPGSKVFAIQEGAIDAGLDI 130 (187)
T ss_dssp SCCCTTCHHHHHHHHHHHTTCBC
T ss_pred CCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 77876740998999999669267