Query gi|254780245|ref|YP_003064658.1| 50S ribosomal protein L18 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 120
No_of_seqs 103 out of 1938
Neff 5.6
Searched_HMMs 33803
Date Tue May 24 05:20:26 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780245.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3i1n_O 50S ribosomal protein 100.0 3.2E-38 9.4E-43 247.1 12.6 117 2-120 1-117 (117)
2 >1ovy_A 50S ribosomal protein 100.0 9.5E-37 2.8E-41 238.3 7.9 115 3-120 6-120 (120)
3 >3bbo_Q Ribosomal protein L18; 100.0 7.5E-38 2.2E-42 244.8 2.0 117 3-120 43-161 (161)
4 >2j01_S 50S ribosomal protein 100.0 7.3E-38 2.2E-42 244.9 -1.4 112 2-120 1-112 (112)
5 >2zjr_L 50S ribosomal protein 100.0 5E-34 1.5E-38 222.2 2.5 91 24-120 2-92 (92)
6 >1vq8_N 50S ribosomal protein 100.0 7.7E-31 2.3E-35 203.3 11.9 99 22-120 28-130 (187)
7 >3jyw_E 60S ribosomal protein 100.0 1.4E-31 4.2E-36 207.6 -6.9 99 21-120 33-133 (237)
8 >2zkr_n 60S ribosomal protein 99.4 3.1E-12 9.2E-17 93.0 13.0 96 24-119 46-172 (297)
9 >2vqe_K 30S ribosomal protein 97.2 0.0061 1.8E-07 37.9 10.0 88 25-119 15-104 (129)
10 >2zkq_k 40S ribosomal protein 97.1 0.0047 1.4E-07 38.6 8.8 95 22-119 24-125 (151)
11 >3i1m_K 30S ribosomal protein 97.1 0.0031 9.1E-08 39.7 7.6 87 26-119 18-106 (129)
12 >1s1h_K RP59A, 40S ribosomal p 97.1 0.0057 1.7E-07 38.1 8.9 72 25-98 12-84 (136)
13 >3bbn_K Ribosomal protein S11; 96.3 0.013 3.9E-07 35.9 6.4 81 26-109 29-111 (140)
14 >3jyw_E 60S ribosomal protein 87.6 0.29 8.6E-06 28.0 1.9 39 81-119 122-162 (237)
15 >2zxd_A Alpha-L-fucosidase, pu 87.2 1.1 3.3E-05 24.5 4.7 42 79-120 108-168 (354)
16 >3gza_A Putative alpha-L-fucos 86.9 0.93 2.8E-05 25.0 4.2 41 80-120 63-125 (345)
17 >2fqx_A Membrane lipoprotein T 82.5 3.8 0.00011 21.4 6.9 49 72-120 2-52 (137)
18 >2d73_A Alpha-glucosidase SUSB 80.6 4.4 0.00013 21.0 5.8 47 74-120 60-125 (309)
19 >3a24_A Alpha-galactosidase; g 80.3 3.4 0.0001 21.6 4.8 45 76-120 39-93 (182)
20 >1qpz_A PURA, protein (purine 78.2 5.3 0.00016 20.5 5.8 47 74-120 1-50 (132)
21 >1dbq_A Purine repressor; tran 78.2 5.3 0.00016 20.5 5.8 47 74-120 1-50 (132)
22 >3ksm_A ABC-type sugar transpo 75.1 3.1 9.3E-05 21.9 3.4 50 70-119 1-53 (136)
23 >2qcu_A Aerobic glycerol-3-pho 73.1 7.3 0.00022 19.7 5.6 47 74-120 11-59 (171)
24 >3h5o_A Transcriptional regula 70.7 8.2 0.00024 19.4 5.1 45 76-120 3-49 (132)
25 >2rgh_A Alpha-glycerophosphate 68.1 9.4 0.00028 19.0 5.4 48 73-120 39-88 (200)
26 >2h3h_A Sugar ABC transporter, 66.4 9.6 0.00028 19.0 4.3 44 76-119 3-51 (166)
27 >2wvv_A Alpha-L-fucosidase; al 66.3 7.1 0.00021 19.7 3.6 41 80-120 82-141 (351)
28 >3cs3_A Sugar-binding transcri 64.9 11 0.00032 18.7 4.9 45 76-120 3-50 (130)
29 >1d5t_A Guanine nucleotide dis 64.4 11 0.00033 18.6 6.1 45 76-120 16-60 (135)
30 >3eyp_A Putative alpha-L-fucos 64.1 11 0.00033 18.6 4.6 40 81-120 59-120 (327)
31 >3c3k_A Alanine racemase; stru 62.3 12 0.00036 18.4 5.1 45 76-120 3-50 (131)
32 >2h0a_A TTHA0807, transcriptio 61.2 13 0.00038 18.3 5.3 45 76-120 2-54 (134)
33 >1gtk_A Porphobilinogen deamin 59.7 14 0.0004 18.1 4.5 23 68-90 58-80 (94)
34 >3c9i_A Tail needle protein GP 59.5 5 0.00015 20.7 1.8 15 105-119 69-83 (84)
35 >3da1_A Glycerol-3-phosphate d 58.6 14 0.00042 18.0 5.0 47 74-120 26-85 (193)
36 >3egc_A Putative ribose operon 56.7 15 0.00045 17.8 5.8 45 76-120 3-50 (132)
37 >3gyb_A Transcriptional regula 55.9 16 0.00047 17.7 5.1 45 76-120 3-48 (129)
38 >3e61_A Putative transcription 55.6 16 0.00047 17.7 4.0 46 75-120 7-55 (131)
39 >1np7_A DNA photolyase; protei 55.6 14 0.00042 18.0 3.6 42 79-120 90-132 (146)
40 >2o20_A Catabolite control pro 54.5 17 0.00049 17.6 5.2 46 75-120 2-50 (130)
41 >1owl_A Photolyase, deoxyribod 53.5 17 0.00051 17.5 5.1 43 78-120 81-124 (196)
42 >3g1w_A Sugar ABC transporter; 52.9 13 0.00037 18.3 3.0 45 76-120 3-51 (134)
43 >3k9c_A Transcriptional regula 52.8 18 0.00052 17.4 5.3 45 76-120 3-49 (130)
44 >3kjx_A Transcriptional regula 51.9 18 0.00054 17.3 3.9 45 76-120 3-51 (132)
45 >3g85_A Transcriptional regula 51.7 18 0.00055 17.3 4.8 45 76-120 3-50 (134)
46 >3clk_A Transcription regulato 51.5 19 0.00055 17.3 5.6 45 76-120 3-50 (131)
47 >2fep_A Catabolite control pro 48.7 21 0.00061 17.0 4.6 45 76-120 3-51 (133)
48 >3k4h_A Putative transcription 48.7 21 0.00061 17.0 5.3 45 76-120 3-50 (132)
49 >2rgy_A Transcriptional regula 48.1 21 0.00062 17.0 4.7 45 76-120 4-51 (133)
50 >2oln_A NIKD protein; flavopro 48.0 21 0.00062 17.0 5.5 45 76-120 14-59 (168)
51 >2hsg_A Glucose-resistance amy 47.6 21 0.00063 16.9 3.9 45 76-120 4-52 (134)
52 >1byk_A Protein (trehalose ope 46.7 22 0.00066 16.8 6.1 45 76-120 3-51 (125)
53 >3dme_A Conserved exported pro 46.6 22 0.00066 16.8 5.3 46 75-120 13-61 (161)
54 >3fy4_A 6-4 photolyase; DNA re 46.0 22 0.00066 16.8 3.3 43 78-120 92-135 (142)
55 >3eyw_A C-terminal domain of g 44.9 24 0.0007 16.7 5.7 38 75-120 13-50 (123)
56 >2a9f_A Putative malic enzyme 44.9 18 0.00053 17.4 2.7 29 76-104 12-41 (132)
57 >3hcw_A Maltose operon transcr 44.8 24 0.0007 16.7 4.7 44 76-119 3-49 (132)
58 >3huu_A Transcription regulato 44.1 24 0.00072 16.6 5.1 45 76-120 3-50 (129)
59 >1jye_A Lactose operon repress 44.0 24 0.00072 16.6 4.7 45 76-120 3-50 (130)
60 >3gbv_A Putative LACI-family t 41.4 27 0.00079 16.3 5.9 47 74-120 1-56 (137)
61 >1vl6_A Malate oxidoreductase; 41.3 24 0.00072 16.6 2.9 33 74-106 33-66 (156)
62 >3hg3_A Alpha-galactosidase A; 40.9 27 0.00081 16.3 3.9 46 75-120 40-100 (239)
63 >2hqb_A Transcriptional activa 40.0 25 0.00074 16.5 2.8 20 99-118 25-44 (120)
64 >3dk9_A Grase, GR, glutathione 39.7 29 0.00084 16.2 5.3 47 74-120 10-60 (62)
65 >2wq7_A RE11660P; lyase-DNA co 39.2 29 0.00086 16.1 3.6 42 79-120 114-156 (163)
66 >3d02_A Putative LACI-type tra 38.5 30 0.00088 16.1 5.1 45 76-120 3-52 (149)
67 >3ctp_A Periplasmic binding pr 37.1 31 0.00093 15.9 5.2 45 76-120 3-50 (130)
68 >1vli_A Spore coat polysacchar 35.1 34 0.001 15.7 3.9 45 76-120 44-117 (300)
69 >3kke_A LACI family transcript 34.3 35 0.001 15.7 5.2 45 76-120 3-50 (137)
70 >2jui_A PLNE; ampiphilic alpha 34.1 24 0.00072 16.6 2.0 21 95-115 1-21 (33)
71 >1np3_A Ketol-acid reductoisom 33.8 35 0.001 15.6 3.9 26 76-101 26-51 (182)
72 >2gag_B Heterotetrameric sarco 32.9 37 0.0011 15.5 5.1 45 76-120 31-79 (199)
73 >3dbi_A Sugar-binding transcri 32.8 37 0.0011 15.5 5.9 45 76-120 4-51 (133)
74 >3brq_A HTH-type transcription 32.8 37 0.0011 15.5 5.7 45 76-120 4-51 (133)
75 >1lu9_A Methylene tetrahydrome 32.7 37 0.0011 15.5 3.6 39 74-116 12-50 (132)
76 >3gv0_A Transcriptional regula 32.5 37 0.0011 15.5 5.1 44 76-119 3-49 (132)
77 >2z04_A Phosphoribosylaminoimi 32.3 38 0.0011 15.5 3.1 25 76-100 11-35 (80)
78 >3c18_A Nucleotidyltransferase 31.9 17 0.00049 17.6 0.9 12 91-102 94-105 (113)
79 >2fvy_A D-galactose-binding pe 31.7 19 0.00055 17.3 1.1 46 75-120 13-61 (145)
80 >2q28_A Oxalyl-COA decarboxyla 31.2 39 0.0012 15.4 4.6 39 77-120 10-48 (191)
81 >3a3d_A PBP4, penicillin-bindi 30.7 40 0.0012 15.3 4.0 41 80-120 40-98 (121)
82 >2qf7_A Pyruvate carboxylase p 30.0 41 0.0012 15.2 3.8 48 70-120 74-121 (124)
83 >2ioy_A Periplasmic sugar-bind 28.9 33 0.00097 15.8 2.0 44 76-119 3-51 (133)
84 >2zko_A NS1, NS1A, non-structu 28.7 43 0.0013 15.1 2.8 20 68-87 54-73 (73)
85 >2w70_A Biotin carboxylase; li 28.3 44 0.0013 15.1 3.6 46 72-120 57-102 (105)
86 >1ulz_A Pyruvate carboxylase N 28.3 44 0.0013 15.1 4.2 47 71-120 55-101 (104)
87 >2iye_A Copper-transporting AT 28.1 44 0.0013 15.1 2.5 28 89-118 27-54 (164)
88 >2qu7_A Putative transcription 28.0 45 0.0013 15.0 5.2 45 76-120 3-50 (136)
89 >1y0p_A Fumarate reductase fla 27.7 45 0.0013 15.0 5.5 47 74-120 39-94 (245)
90 >1yx1_A Hypothetical protein P 27.1 46 0.0014 14.9 3.1 42 79-120 87-128 (264)
91 >3d8u_A PURR transcriptional r 27.0 46 0.0014 14.9 5.2 46 75-120 3-51 (121)
92 >1w96_A ACC, acetyl-coenzyme A 26.2 24 0.00071 16.6 0.9 22 32-53 48-69 (185)
93 >1hwx_A GDH, glutamate dehydro 26.2 48 0.0014 14.8 2.8 30 76-105 13-43 (131)
94 >3l49_A ABC sugar (ribose) tra 25.8 49 0.0014 14.8 4.8 44 76-119 3-51 (141)
95 >3l6u_A ABC-type sugar transpo 25.4 50 0.0015 14.7 4.6 45 75-119 7-56 (138)
96 >1jx6_A LUXP protein; protein- 24.9 51 0.0015 14.7 4.1 44 76-119 3-50 (133)
97 >2d5c_A AROE, shikimate 5-dehy 24.9 51 0.0015 14.7 4.4 37 75-115 11-47 (114)
98 >3l6d_A Putative oxidoreductas 24.7 51 0.0015 14.7 3.8 28 75-102 18-45 (168)
99 >3brs_A Periplasmic binding pr 24.5 52 0.0015 14.6 4.6 44 76-119 3-51 (133)
100 >3jvd_A Transcriptional regula 24.4 52 0.0015 14.6 4.1 45 76-120 3-50 (128)
101 >1yb4_A Tartronic semialdehyde 24.1 53 0.0016 14.6 2.5 27 76-102 13-39 (295)
102 >2e4u_A Metabotropic glutamate 23.7 54 0.0016 14.6 4.7 43 77-119 4-47 (177)
103 >3d64_A Adenosylhomocysteinase 23.6 54 0.0016 14.5 3.2 24 76-99 41-64 (163)
104 >1ozh_A ALS, acetolactate synt 23.6 54 0.0016 14.5 3.3 39 77-120 13-51 (186)
105 >3hs3_A Ribose operon represso 23.5 54 0.0016 14.5 3.0 42 78-119 4-48 (126)
106 >3h5t_A Transcriptional regula 23.2 55 0.0016 14.5 4.1 43 78-120 3-65 (146)
107 >1onf_A GR, grase, glutathione 23.0 55 0.0016 14.5 5.2 49 72-120 23-75 (112)
108 >3e3m_A Transcriptional regula 22.8 56 0.0017 14.4 5.5 45 76-120 3-51 (134)
109 >1mx3_A CTBP1, C-terminal bind 22.7 56 0.0017 14.4 3.3 27 75-101 61-87 (195)
110 >2cvz_A Dehydrogenase, 3-hydro 22.6 55 0.0016 14.5 2.2 24 77-100 12-35 (157)
111 >1geg_A Acetoin reductase; SDR 22.6 57 0.0017 14.4 4.4 43 73-119 10-52 (256)
112 >1id1_A Putative potassium cha 22.3 57 0.0017 14.4 4.7 39 76-118 13-51 (153)
113 >2hqm_A GR, grase, glutathione 22.0 58 0.0017 14.3 5.1 47 74-120 10-60 (64)
114 >3dje_A Fructosyl amine: oxyge 22.0 58 0.0017 14.3 2.9 26 74-99 14-40 (170)
115 >2c31_A Oxalyl-COA decarboxyla 21.8 59 0.0017 14.3 4.6 40 76-120 11-50 (193)
116 >2iks_A DNA-binding transcript 21.6 59 0.0018 14.3 3.6 45 76-120 3-50 (130)
117 >3h0l_B Aspartyl/glutamyl-tRNA 21.2 19 0.00055 17.3 -0.5 29 74-103 57-86 (296)
118 >1vpd_A Tartronate semialdehyd 20.9 61 0.0018 14.2 3.8 27 76-102 15-41 (167)
119 >3jrx_A Acetyl-COA carboxylase 20.7 58 0.0017 14.3 2.0 46 72-120 122-167 (169)
120 >3bdl_A Staphylococcal nucleas 20.6 56 0.0016 14.5 1.8 39 80-118 121-159 (171)
121 >1ygy_A PGDH, D-3-phosphoglyce 20.6 62 0.0018 14.2 3.3 28 76-103 55-82 (185)
122 >1yqg_A Pyrroline-5-carboxylat 20.3 63 0.0019 14.1 3.7 25 76-100 10-35 (153)
123 >3fwz_A Inner membrane protein 20.1 64 0.0019 14.1 4.8 26 75-100 16-41 (140)
124 >3llv_A Exopolyphosphatase-rel 20.1 64 0.0019 14.1 4.8 36 75-118 15-50 (141)
No 1
>>3i1n_O 50S ribosomal protein L18; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_M 1p86_M 1vs8_O 2aw4_O 2awb_O 1vs6_O 2i2v_O 2j28_O 2i2t_O* 2qao_O* 2qba_O* 2qbc_O* 2qbe_O 2qbg_O 2qbi_O* 2qbk_O* 2qov_O 2qox_O 2qoz_O* 2qp1_O* ... (O:)
Probab=100.00 E-value=3.2e-38 Score=247.05 Aligned_cols=117 Identities=43% Similarity=0.645 Sum_probs=113.3
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 88799999899877687505787882499996387099999962797599998502100000134686678999999999
Q gi|254780245|r 2 ATKKKVLARRISRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLL 81 (120)
Q Consensus 2 ~~k~~~~~kR~~R~R~k~k~~~~~~pRL~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~i 81 (120)
|+++..+.+|+.|+++++.+. .+|||+||+||+|||||||||.+++||||+||.|++++..+.+++|++||+.+|++|
T Consensus 1 ~~r~~~r~~R~~r~~~k~~~~--~~pRl~V~~Snk~i~aqiid~~~~~~l~sast~e~~~~~~~~~~~n~~Aa~~vG~~l 78 (117)
T 3i1n_O 1 MDKKSARIRRATRARRKLQEL--GATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAV 78 (117)
T ss_dssp -CCHHHHHHHHHHHHHHHHHT--CCCEEEEEECSSCEEEEEECTTSSCEEEEEESSSSHHHHTCSSSSSTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCC--CCCEEEEEECCCCEEEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 982689999999999987268--997599997188279999977988336642014676664327787768999999999
Q ss_pred HHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 999997799799983898631225999999999658789
Q gi|254780245|r 82 VERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 82 a~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
|++++++||++|+||||||+|||||+||+|++||+||+|
T Consensus 79 a~r~~~~gi~~v~~Drg~~~y~grv~a~~~~~r~~Gl~f 117 (117)
T 3i1n_O 79 AERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117 (117)
T ss_dssp HHHHHHTTCCCCEEECTTSCTTSTTHHHHHHHHTTTCCC
T ss_pred HHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 999998799989976999753579999999999828889
No 2
>>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} (A:)
Probab=100.00 E-value=9.5e-37 Score=238.31 Aligned_cols=115 Identities=48% Similarity=0.724 Sum_probs=105.7
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 87999998998776875057878824999963870999999627975999985021000001346866789999999999
Q gi|254780245|r 3 TKKKVLARRISRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLV 82 (120)
Q Consensus 3 ~k~~~~~kR~~R~R~k~k~~~~~~pRL~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~ia 82 (120)
++++.+.+|+.|+|.++.+.. .+|||+|++||+|||||||||.+++||+|+||+|++++. .+++|++||+.+|++||
T Consensus 6 ~r~~~r~~~~~R~r~k~~~~~-~~pRL~V~~Snk~i~aqvvd~~~~~~lasaSt~ek~~~~--~~~~n~~aa~~iG~~la 82 (120)
T 1ovy_A 6 DRNAVRKKRHARIRKKIFGTT-ERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFGL--DSTNNIEAAKKVGELVA 82 (120)
T ss_dssp ------------------CCS-SCCSEEEEEETTEEEEEEECCSSCCCEEEESTTSTTTCS--SCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCC-CCCEEEEEEECCEEEEEEEECCCCCEEEEECCCCHHHCC--CCCCCHHHHHHHHHHHH
T ss_conf 789999999999898850688-987699998278269999947889489982452344333--46885999999999999
Q ss_pred HHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99997799799983898631225999999999658789
Q gi|254780245|r 83 ERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 83 ~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
++|+++||++|+|||+||+|||||+||+|++||+||+|
T Consensus 83 ~r~~~~gi~~v~~Drg~~~~~grv~a~~~~~re~Gl~~ 120 (120)
T 1ovy_A 83 KRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGLEF 120 (120)
T ss_dssp HHHHHHSSSCCCCCSTTCSSCSSTHHHHHHHHHHHCCC
T ss_pred HHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99998699889980799973179999999999808889
No 3
>>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Vitis vinifera} (Q:)
Probab=100.00 E-value=7.5e-38 Score=244.84 Aligned_cols=117 Identities=40% Similarity=0.633 Sum_probs=107.0
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCCCC--CCCCHHHHHHHHHH
Q ss_conf 8799999899877687505787882499996387099999962797599998502100000134--68667899999999
Q gi|254780245|r 3 TKKKVLARRISRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLK--TGANIVAATAVGNL 80 (120)
Q Consensus 3 ~k~~~~~kR~~R~R~k~k~~~~~~pRL~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~~~--~~~ni~aA~~vG~~ 80 (120)
.+++.+.+++.|+|.++.+.+ .+|||+||+||+|||||||||.++.|++++||++++++..+. +++|++||+.||++
T Consensus 43 ~r~~~r~~~~~R~r~k~~~~~-~r~RL~V~~Snkhi~Aqii~~~~~~~l~~aST~~k~lk~~~~~~~~~n~~AA~~vG~~ 121 (161)
T 3bbo_Q 43 TRREDRTARHVRIRKKVEGTP-ERPRLCVFRSNKHLYVQVIDDSKMHTLASASTMQKSISEELDYSSSPTIEVAKKVGEV 121 (161)
T ss_dssp CCCCCGGGTSCCSCSGGGGSS-SCCCCEEEECSSCEEEEEECCTTSCEEEEEEHHHHHHHHCCTTCCSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCC-CCCEEEEEEECCEEEEEEEECCCCCEEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 799999999999999860789-9877999972671799999568885899985332013222100321389999999999
Q ss_pred HHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 9999997799799983898631225999999999658789
Q gi|254780245|r 81 LVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 81 ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
||++|+++||++|+||||||+|||||+||+|++||+||+|
T Consensus 122 la~ra~~~gi~~vvfDrg~~~y~grv~a~~~~~re~Gl~f 161 (161)
T 3bbo_Q 122 IASACLEKGITKVAFDRGGYPYHGRVKALADAAREKGLQF 161 (161)
T ss_dssp SSSHHHHTSSCCCCCCCSSSCSSSTTHHHHHHHTTTTCCC
T ss_pred HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 9999998799889980799732019999999999848889
No 4
>>2j01_S 50S ribosomal protein L18; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (S:)
Probab=100.00 E-value=7.3e-38 Score=244.89 Aligned_cols=112 Identities=51% Similarity=0.753 Sum_probs=106.0
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 88799999899877687505787882499996387099999962797599998502100000134686678999999999
Q gi|254780245|r 2 ATKKKVLARRISRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLL 81 (120)
Q Consensus 2 ~~k~~~~~kR~~R~R~k~k~~~~~~pRL~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~i 81 (120)
|+|+..+.+|+.|+|+++.+. .+|||+||+||+|||||||||.+++||||+||+|++++ ++|++||+.||++|
T Consensus 1 ~~k~~~r~rr~~r~r~k~~~~--~~~RL~V~~Snk~i~aqvid~~~~~~lasasT~e~~~~-----~~n~~Aa~~vG~~l 73 (112)
T 2j01_S 1 MARLTAYERRKFRVRNRIKRT--GRLRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLK-----GNKTEVARQVGRAL 73 (112)
T ss_dssp ----------CCCCCSCSCCC--SSCEEECCBCSSCBCEEEEETTTTEEEEEECSTTTCCC-----SCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCC--CCCEEEEEEECCEEEEEEEECCCCCEEEEECCCCCCCC-----CCCHHHHHHHHHHH
T ss_conf 985028999999999987379--98669999707817999998798838998613332224-----65199999999999
Q ss_pred HHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 999997799799983898631225999999999658789
Q gi|254780245|r 82 VERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 82 a~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
|++|+++||++|+||||||+|||||++|+|++||+||+|
T Consensus 74 a~r~~~~gi~~v~fDrg~~~y~grv~a~~~~~r~~Gl~f 112 (112)
T 2j01_S 74 AEKALALGIKQVAFDRGPYKYHGRVKALAEGAREGGLEF 112 (112)
T ss_dssp HHHHHHTSCCCCBCCCSTTCSSSSCCCCSSCTTCC----
T ss_pred HHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 999998699889980899721209999999999848889
No 5
>>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (L:23-114)
Probab=99.98 E-value=5e-34 Score=222.15 Aligned_cols=91 Identities=57% Similarity=0.800 Sum_probs=86.7
Q ss_pred CCCCEEEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCH
Q ss_conf 78824999963870999999627975999985021000001346866789999999999999977997999838986312
Q gi|254780245|r 24 RGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKVGVKSVYFDRGKHLYC 103 (120)
Q Consensus 24 ~~~pRL~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~ia~r~~~~gI~~v~FDR~g~~yH 103 (120)
..+|||+||+||+|||||||||.+++||||+||+|++. .+|+++|+.+|++||++++++||++|+|||+||+||
T Consensus 2 ~~rpRL~V~~Sn~~i~AQiidd~~~~tl~sasT~e~~~------~~~~~aa~~vG~~la~r~~~~gi~~vvfDrg~~~yh 75 (92)
T 2zjr_L 2 SGRLRLSVYRSSKHIYAQIIDDSRGQTLAAASSAALKS------GNKTDTAAAVGKALAAAAAEKGIKQVVFDRGSYKYH 75 (92)
T ss_dssp TCSEEECCCTTSSCCCCCEEETTTTEECCCCCSCSCCT------TCSSSSHHHHHHHHHHHHHTTCCCCCEECCCSSCSC
T ss_pred CCCCEEEEEECCCCEEEEEEECCCCEEHHHHHHHHHCC------CCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCH
T ss_conf 89857999970770678888344522034544222002------442347899998876689985980899868997301
Q ss_pred HHHHHHHHHHHHCCCCC
Q ss_conf 25999999999658789
Q gi|254780245|r 104 GRIAALADAVRKGGVSF 120 (120)
Q Consensus 104 Grvka~ad~~R~~Gl~F 120 (120)
|||+||+|++||+||+|
T Consensus 76 grv~a~~~~~re~Gl~f 92 (92)
T 2zjr_L 76 GRVKALADAAREGGLDF 92 (92)
T ss_dssp SHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHCCCCC
T ss_conf 19999999999848989
No 6
>>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (N:)
Probab=99.97 E-value=7.7e-31 Score=203.29 Aligned_cols=99 Identities=24% Similarity=0.279 Sum_probs=94.8
Q ss_pred CCCCCCEEEEEEECCCEEEEEE--ECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 7878824999963870999999--62797599998502100000134686678999999999999997799799983898
Q gi|254780245|r 22 VSRGRLRLSVCRSSKHIYGQII--DDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKVGVKSVYFDRGK 99 (120)
Q Consensus 22 ~~~~~pRL~V~rSnkhiyAQiI--dd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~ia~r~~~~gI~~v~FDR~g 99 (120)
....+|||+|++||+||||||| ||.+++|||||||.|+.+.+.+.+++|++||+.+|.++|++++++||.+++||+|+
T Consensus 28 ~~~~k~RLvVr~TNr~i~aQIv~~d~~gd~vlasAsS~El~~~g~~~~~~N~~AAy~vG~llA~Ral~~gi~~~vlD~G~ 107 (187)
T 1vq8_N 28 LKSGKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLDIGL 107 (187)
T ss_dssp HTTCSCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGGGGTCCSCSSSHHHHHHHHHHHHHHHHHTTCCBCEEECTT
T ss_pred HCCCCCEEEEEEECCCEEEEEEEECCCCCEEEEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 51899769999947807999998338999799998711355522215862778999999999999985035605873177
Q ss_pred C--CCHHHHHHHHHHHHHCCCCC
Q ss_conf 6--31225999999999658789
Q gi|254780245|r 100 H--LYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 100 ~--~yHGrvka~ad~~R~~Gl~F 120 (120)
+ .|||||+||+++++|+||+|
T Consensus 108 ~~~~~ggrV~A~~kga~d~Gl~i 130 (187)
T 1vq8_N 108 NSPTPGSKVFAIQEGAIDAGLDI 130 (187)
T ss_dssp SCCCTTCHHHHHHHHHHHTTCBC
T ss_pred CCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 77876740998999999669267
No 7
>>3jyw_E 60S ribosomal protein L5; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_E (E:)
Probab=99.95 E-value=1.4e-31 Score=207.62 Aligned_cols=99 Identities=20% Similarity=0.062 Sum_probs=91.7
Q ss_pred CCCCCCCEEEEEEECCCEEEEEEEC--CCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 5787882499996387099999962--79759999850210000013468667899999999999999779979998389
Q gi|254780245|r 21 SVSRGRLRLSVCRSSKHIYGQIIDD--SIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKVGVKSVYFDRG 98 (120)
Q Consensus 21 ~~~~~~pRL~V~rSnkhiyAQiIdd--~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~ia~r~~~~gI~~v~FDR~ 98 (120)
..+..+|||+||+||+||||||||| .+++|||||||+|+...+....++|++||+.+|.+||++++++||..++|||+
T Consensus 33 k~~s~kpRLvVrkSNkhI~aQIi~~~~~Gd~vlasAsS~El~~~g~~~~~~N~~AAy~vG~llAkRal~kgi~~v~Fdr~ 112 (237)
T 3jyw_E 33 KYNTPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQRLGLDETYKGV 112 (237)
T ss_dssp CBCSSSSSEECCCCSSCCEEECCCBCSSSBCCSSEEEGGGSTTTSCCSCSCBSHHHHHHHHHHHHCBSCSSSCSSBCSSC
T ss_pred CCCCCCCEEEEEEECCCEEEEEEEECCCCCEEEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCC
T ss_conf 45898735999997894899999732789999998517778664866787730799998899999998761717664576
Q ss_pred CCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 8631225999999999658789
Q gi|254780245|r 99 KHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 99 g~~yHGrvka~ad~~R~~Gl~F 120 (120)
+.|||+|++|||++||.|++|
T Consensus 113 -~~yhGrv~a~ae~~re~G~~f 133 (237)
T 3jyw_E 113 -EEVEGEYELTEAVEDGPRPFK 133 (237)
T ss_dssp -SSSSSCCCCCSCCCSSCCCCS
T ss_pred -CCCCCCCCCCCCCCCCCCCEE
T ss_conf -134676103233457888726
No 8
>>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (n:)
Probab=99.44 E-value=3.1e-12 Score=93.02 Aligned_cols=96 Identities=21% Similarity=0.201 Sum_probs=87.6
Q ss_pred CCCCEEEEEEECCCEEEEEEE--CCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHC-------------
Q ss_conf 788249999638709999996--27975999985021000001346866789999999999999977-------------
Q gi|254780245|r 24 RGRLRLSVCRSSKHIYGQIID--DSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKV------------- 88 (120)
Q Consensus 24 ~~~pRL~V~rSnkhiyAQiId--d~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~ia~r~~~~------------- 88 (120)
..+|||+|.+||++|.+||+. ..++.|||+|.|.|..-.++....+|.+||+..|.++|.+++++
T Consensus 46 s~K~RlVVR~TN~~ii~Qiv~~~~~GD~v~~sA~S~eL~kyG~k~g~~N~~AAY~TGlL~arR~L~kl~ld~~y~g~~e~ 125 (297)
T 2zkr_n 46 TPKYRMIVRVTNRDIICQIAYARIEGDMIVCARYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEV 125 (297)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSSSCEEEEEEEGGGGGGTCCCSCSSSHHHHHHHHHHHHHHHHCCCSCCCCCSSCCSS
T ss_pred CCCCEEEEEEECCCEEEEEEEECCCCCEEEEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCC
T ss_conf 98605999984793899999851789899998632138665988888732899998999999998750620220464024
Q ss_pred --------------CCCEEEECCCCCCCH--HHHHHHHHHHHHCCCC
Q ss_conf --------------997999838986312--2599999999965878
Q gi|254780245|r 89 --------------GVKSVYFDRGKHLYC--GRIAALADAVRKGGVS 119 (120)
Q Consensus 89 --------------gI~~v~FDR~g~~yH--Grvka~ad~~R~~Gl~ 119 (120)
|..++++|-|-.+.. +||.|..-|+-++||.
T Consensus 126 ~ge~~~ve~~~~~~~~~~aiLDiGL~rtt~G~RVFaalKGa~DgGl~ 172 (297)
T 2zkr_n 126 TGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLS 172 (297)
T ss_dssp SSCCCCCSSSCSSSCCCBEEEECTTSCCCTTCHHHHHHHHHHHTTCB
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCC
T ss_conf 56402334334688861699723654576675345441002257866
No 9
>>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (K:)
Probab=97.17 E-value=0.0061 Score=37.92 Aligned_cols=88 Identities=24% Similarity=0.203 Sum_probs=65.8
Q ss_pred CCCEEEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-EECCC-CCCC
Q ss_conf 882499996387099999962797599998502100000134686678999999999999997799799-98389-8631
Q gi|254780245|r 25 GRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKVGVKSV-YFDRG-KHLY 102 (120)
Q Consensus 25 ~~pRL~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~ia~r~~~~gI~~v-~FDR~-g~~y 102 (120)
..+.+.|+-|.+|..+.+. |..|.+++.+|.-...+++... +.-.||..+++.+++++++.||+.| ++=+| |.
T Consensus 15 ~~~iihI~st~NNT~itlT-d~~g~~~~~~S~G~~Gfkg~rk--~t~~Aa~~aa~~~~~~~~~~gi~~v~i~ikG~G~-- 89 (129)
T 2vqe_K 15 ASGRAYIHASYNNTIVTIT-DPDGNPITWSSGGVIGYKGSRK--GTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGA-- 89 (129)
T ss_dssp SEEEEEEEECSSCEEEEEE-CTTSCEEEECCTTTTTCCSGGG--GSHHHHHHHHHHHHHHHHTTTCCEEEEEEESCCT--
T ss_pred CCCEEEEEECCCCEEEEEE-CCCCCEEEEEECCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCC--
T ss_conf 3678999944698899998-6999999998424356567555--5467899999999999998197099999987778--
Q ss_pred HHHHHHHHHHHHHCCCC
Q ss_conf 22599999999965878
Q gi|254780245|r 103 CGRIAALADAVRKGGVS 119 (120)
Q Consensus 103 HGrvka~ad~~R~~Gl~ 119 (120)
||-.+ .-++...||+
T Consensus 90 -gr~~a-ik~l~~~glk 104 (129)
T 2vqe_K 90 -GREQA-IRALQASGLQ 104 (129)
T ss_dssp -THHHH-HHHHHTSSSE
T ss_pred -CHHHH-HHHHHCCCCE
T ss_conf -70788-4086538878
No 10
>>2zkq_k 40S ribosomal protein S14E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (k:)
Probab=97.09 E-value=0.0047 Score=38.59 Aligned_cols=95 Identities=12% Similarity=0.083 Sum_probs=66.5
Q ss_pred CCCCCCEEEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-EECCC-C
Q ss_conf 787882499996387099999962797599998502100000134686678999999999999997799799-98389-8
Q gi|254780245|r 22 VSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKVGVKSV-YFDRG-K 99 (120)
Q Consensus 22 ~~~~~pRL~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~ia~r~~~~gI~~v-~FDR~-g 99 (120)
.....+.+.|+-|..|..+.|. |..|.+++..|+-.-.++..... +.-.||..+++.+++++.+.||+.| ++=|| |
T Consensus 24 ~~~~~~ivhI~~t~NNT~itlT-d~~g~~~~~~S~G~~gfk~~~k~-~t~~Aa~~aa~~~~~~~~~~Gik~v~v~ikG~~ 101 (151)
T 2zkq_k 24 GENVFGVCHIFASFNDTFVHVT-DLSGKETICRVTGGMKVKADRDE-SSPYAAMLAAQDVAQRCKELGITALHIKLRATG 101 (151)
T ss_dssp CCCSBCCEEEEECSSCEEEEEE-CTTCCEEEEEESTTSSCCTTTTT-TSHHHHHHHHHHHHHHTTTTCCCBCCEEEESSC
T ss_pred CCEEEEEEEEEEECCCCEEEEE-CCCCCEEEEEECCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHCCEEEEEEEEEEC
T ss_conf 8607899999961488279998-69999899996576554547656-653478999999999999819709999998524
Q ss_pred CCC-----HHHHHHHHHHHHHCCCC
Q ss_conf 631-----22599999999965878
Q gi|254780245|r 100 HLY-----CGRIAALADAVRKGGVS 119 (120)
Q Consensus 100 ~~y-----HGrvka~ad~~R~~Gl~ 119 (120)
+-| -||- ++.-++...||+
T Consensus 102 ~~~~~~~G~Gr~-~~ik~L~~~~lk 125 (151)
T 2zkq_k 102 GNRTKTPGPGAQ-SALRALARSGMK 125 (151)
T ss_dssp CBTTBCCCTTHH-HHHHHHHHHTCC
T ss_pred CCCCCCCCCCHH-HHHHHHHHCCCE
T ss_conf 766667887558-889999878978
No 11
>>3i1m_K 30S ribosomal protein S11; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_K* 3e1a_C 3e1c_C 1vs5_K 3i1o_K 3i1q_K 3i1s_K 3i1z_K 3i21_K 2qal_K* 1p6g_K 1p87_K 2aw7_K 2avy_K 2i2u_K 2i2p_K* 2qan_K* 2qb9_K* 2qbb_K* 2qbd_K ... (K:)
Probab=97.06 E-value=0.0031 Score=39.70 Aligned_cols=87 Identities=18% Similarity=0.120 Sum_probs=64.6
Q ss_pred CCEEEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE--EECCCCCCCH
Q ss_conf 82499996387099999962797599998502100000134686678999999999999997799799--9838986312
Q gi|254780245|r 26 RLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKVGVKSV--YFDRGKHLYC 103 (120)
Q Consensus 26 ~pRL~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~ia~r~~~~gI~~v--~FDR~g~~yH 103 (120)
...+.|+-|..|..+++. |..|.+++..|+-...|++... ..-.||..+++.+++++++.||+.| +|.--|+-=+
T Consensus 18 ~giihI~~s~NNT~vt~T-d~~g~~~~~~S~G~~GfK~~rk--~t~~Aa~~~a~~~~~~~~~~Gi~~v~v~~kG~G~gr~ 94 (129)
T 3i1m_K 18 DGVAHIHASFNNTIVTIT-DRQGNALGWATAGGSGFRGSRK--STPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRE 94 (129)
T ss_dssp EEEEEEEECSSCEEEEEE-ETTCCCCEEEETGGGSCCGGGT--TSHHHHHHHHHHHHTTTGGGCCCEEEEEEESSSTTSS
T ss_pred CCEEEEEECCCCEEEEEE-CCCCCEEEEEECCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHH
T ss_conf 618999923787899998-6999988898434432267544--4367999999999999998298299999979778617
Q ss_pred HHHHHHHHHHHHCCCC
Q ss_conf 2599999999965878
Q gi|254780245|r 104 GRIAALADAVRKGGVS 119 (120)
Q Consensus 104 Grvka~ad~~R~~Gl~ 119 (120)
--|++ +...||+
T Consensus 95 ~ai~~----l~~~glk 106 (129)
T 3i1m_K 95 STIRA----LNAAGFR 106 (129)
T ss_dssp HHHHH----HHTTTCC
T ss_pred HHHHH----HHCCCCE
T ss_conf 77546----5248988
No 12
>>1s1h_K RP59A, 40S ribosomal protein S14-A; 80S ribosome, 40S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae} (K:)
Probab=97.05 E-value=0.0057 Score=38.12 Aligned_cols=72 Identities=14% Similarity=0.018 Sum_probs=57.0
Q ss_pred CCCEEEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-EECCC
Q ss_conf 882499996387099999962797599998502100000134686678999999999999997799799-98389
Q gi|254780245|r 25 GRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKVGVKSV-YFDRG 98 (120)
Q Consensus 25 ~~pRL~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~ia~r~~~~gI~~v-~FDR~ 98 (120)
..+.|.|+-|.+|..+.+.|..+..+++..|.-...+++... +.-.||..+++.+++++++.||+.| +.=||
T Consensus 12 ~~~~ihI~~s~NNT~itlTd~~g~~~~~~~S~G~~gfkg~rk--~t~~Aa~~aa~~~~~~~~~~gi~~v~v~ikG 84 (136)
T 1s1h_K 12 VFGVARIYASFNDTFVHVTDLSGKETIARVTGGMKVKADRDE--SSPYAAMLAAQDVAAKCREVGITAVHVKIRA 84 (136)
T ss_dssp CEEEEEEECCSSCCEEEEEETTSCEEEEEETTTSSCCHHHHH--HCHHHHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred EEEEEEEEECCCCEEEEEECCCCCEEEEEEEECCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 999999991379879999869999789998101113467655--3256889999999999998297089999970
No 13
>>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (K:)
Probab=96.30 E-value=0.013 Score=35.93 Aligned_cols=81 Identities=16% Similarity=0.120 Sum_probs=62.2
Q ss_pred CCEEEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-EECCC-CCCCH
Q ss_conf 82499996387099999962797599998502100000134686678999999999999997799799-98389-86312
Q gi|254780245|r 26 RLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKVGVKSV-YFDRG-KHLYC 103 (120)
Q Consensus 26 ~pRL~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~ia~r~~~~gI~~v-~FDR~-g~~yH 103 (120)
...+.|+.|..|..+++. |..|.+++.+|+-...|++... +.-.||..+++.++++|++.||+.| ++=+| |.-=.
T Consensus 29 ~giihI~~t~NNT~itlT-d~~g~~~~~~S~G~~gfk~~~k--~t~~Aa~~~a~~~~~k~~~~gi~~v~i~~kG~G~gr~ 105 (140)
T 3bbn_K 29 KGVIHVQASFNNTIVTVT-DVRGRVVSWASAGTCGFRGTKR--GTPFAAQTAAGNAIRTVVEQGMQRAEVMIKGPGLGRD 105 (140)
T ss_dssp CCEEEEEECSSCEEEEEE-CSSSCEEEEEETTTSSCCTTSC--SSHHHHHHHHTSGGGTSTTTCCCEEEEEEESCSTTSS
T ss_pred CEEEEEEECCCCEEEEEE-CCCCCEEEEEECCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCHH
T ss_conf 459999904797899996-5999989998343224467553--4175799999999999998098299999944778734
Q ss_pred HHHHHH
Q ss_conf 259999
Q gi|254780245|r 104 GRIAAL 109 (120)
Q Consensus 104 Grvka~ 109 (120)
.-+++|
T Consensus 106 ~~i~~l 111 (140)
T 3bbn_K 106 AALRAI 111 (140)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 641010
No 14
>>3jyw_E 60S ribosomal protein L5; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_E (E:)
Probab=87.63 E-value=0.29 Score=27.99 Aligned_cols=39 Identities=15% Similarity=0.122 Sum_probs=34.2
Q ss_pred HHHHHHHCCCCEEEECCCCCC--CHHHHHHHHHHHHHCCCC
Q ss_conf 999999779979998389863--122599999999965878
Q gi|254780245|r 81 LVERAVKVGVKSVYFDRGKHL--YCGRIAALADAVRKGGVS 119 (120)
Q Consensus 81 ia~r~~~~gI~~v~FDR~g~~--yHGrvka~ad~~R~~Gl~ 119 (120)
+++-+-+.|+..+++|-|-.+ +++||.|.+.+++++||+
T Consensus 122 ~ae~~re~G~~fa~lD~Gl~r~t~g~rvfaalkGa~DgGl~ 162 (237)
T 3jyw_E 122 TEAVEDGPRPFKVFLDIGLQRTTTGARVFGALKGASDGGLY 162 (237)
T ss_dssp CSCCCSSCCCCSCCEECCSSCCCTTCHHHHHHHHHHTTSSC
T ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCC
T ss_conf 23345788872699734544577650178875410147844
No 15
>>2zxd_A Alpha-L-fucosidase, putative; TIM barrel, hydrolase; HET: ZXD; 2.15A {Thermotoga maritima} PDB: 2zwy_A* 2zx5_A* 2zx6_A* 2zx7_A* 2zwz_A* 2zx9_A* 2zxa_A* 2zxb_A* 2zx8_A* 1hl9_A* 1hl8_A* 1odu_A* (A:1-354)
Probab=87.18 E-value=1.1 Score=24.54 Aligned_cols=42 Identities=29% Similarity=0.320 Sum_probs=32.8
Q ss_pred HHHHHHHHHCCCCEEEEC---CCCCCC--------------HHH--HHHHHHHHHHCCCCC
Q ss_conf 999999997799799983---898631--------------225--999999999658789
Q gi|254780245|r 79 NLLVERAVKVGVKSVYFD---RGKHLY--------------CGR--IAALADAVRKGGVSF 120 (120)
Q Consensus 79 ~~ia~r~~~~gI~~v~FD---R~g~~y--------------HGr--vka~ad~~R~~Gl~F 120 (120)
+.+++.+++.|++-|+++ -.|+-+ .++ |+.|+|++|+.||+|
T Consensus 108 ~~~v~~~k~aG~~~vvl~~~h~~g~~~~~S~~~~~~~~~~~~~~D~l~~lv~a~~k~Glkv 168 (354)
T 2zxd_A 108 QEWADLFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVKRGPKRDLVGDLAKAVREAGLRF 168 (354)
T ss_dssp HHHHHHHHHTTCSEEEEEEECTTCCBSSCCSSCSCBTTTSTTCSCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEE
T ss_conf 9999999984997699767733774236899999877688989737999999998669848
No 16
>>3gza_A Putative alpha-L-fucosidase; NP_812709.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE EPE; 1.60A {Bacteroides thetaiotaomicron vpi-5482} (A:1-345)
Probab=86.95 E-value=0.93 Score=24.98 Aligned_cols=41 Identities=17% Similarity=0.130 Sum_probs=32.1
Q ss_pred HHHHHHHHCCCCEEEEC-C--CCCCC---------------H--HH--HHHHHHHHHHCCCCC
Q ss_conf 99999997799799983-8--98631---------------2--25--999999999658789
Q gi|254780245|r 80 LLVERAVKVGVKSVYFD-R--GKHLY---------------C--GR--IAALADAVRKGGVSF 120 (120)
Q Consensus 80 ~ia~r~~~~gI~~v~FD-R--~g~~y---------------H--Gr--vka~ad~~R~~Gl~F 120 (120)
.+++.+++.|++.|+|+ | .||-+ - +| |+.|++++|+.||+|
T Consensus 63 ~~v~~~k~aG~~~vvl~~khh~G~~lypS~~~~~~~~~~~~~~~~~D~l~~lv~a~~k~Gik~ 125 (345)
T 3gza_A 63 QWVQAAKAAGCKFAVLTATHETGFGLWQSDVNPYCLKAVKWRDGKGDIVRDFVNSCRKYGLQP 125 (345)
T ss_dssp HHHHHHHTTTCSEEEEESCCSSCCBSSCCSSCSSBGGGSSGGGGTCCHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE
T ss_conf 999999985997899702006875574899999775557676887557999999986559735
No 17
>>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A* (A:110-246)
Probab=82.53 E-value=3.8 Score=21.37 Aligned_cols=49 Identities=16% Similarity=0.022 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEC--CCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 8999999999999997799799983--898631225999999999658789
Q gi|254780245|r 72 VAATAVGNLLVERAVKVGVKSVYFD--RGKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 72 ~aA~~vG~~ia~r~~~~gI~~v~FD--R~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
++....|.++++.++++|-.+|.|- .......-|...|.++++++|+.+
T Consensus 2 ~nn~~ag~~a~~~L~~~G~~~i~~l~~~~~~~~~~R~~g~~~~~~~~~~~~ 52 (137)
T 2fqx_A 2 EGSFLVGVAAALKAKEAGKSAVGFIVGMELGMMPLFEAGFEAGVKAVDPDI 52 (137)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEESCCSTTTHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 656799999997440378746999626566215789999999999739973
No 18
>>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A* (A:310-618)
Probab=80.64 E-value=4.4 Score=20.97 Aligned_cols=47 Identities=13% Similarity=0.101 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCC-------------------CCHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999999977997999838986-------------------31225999999999658789
Q gi|254780245|r 74 ATAVGNLLVERAVKVGVKSVYFDRGKH-------------------LYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 74 A~~vG~~ia~r~~~~gI~~v~FDR~g~-------------------~yHGrvka~ad~~R~~Gl~F 120 (120)
....-+.+++.+++.|++-|++|-|=+ +|-+-+++++|.+++.|++|
T Consensus 60 ~~~~~~~~~~~~~~~G~~~~~iDdGW~~~~~~~~~~~~~~g~~~~~~fp~gl~~l~d~i~~~Glk~ 125 (309)
T 2d73_A 60 NTANVKRYIDFAAAHGFDAVLVEGWNEGWEDWFGNSKDYVFDFVTPYPDFDVKEIHRYAARKGIKM 125 (309)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECSCBTTGGGCSSSCCSSCCCSSCBCTTCCHHHHHHHHHHTTCEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEE
T ss_conf 889999999999982997899941445775555778754454443177558899999998579769
No 19
>>3a24_A Alpha-galactosidase; glycoside hydrolase family 97, retaining glycosidase; HET: MES; 2.30A {Bacteroides thetaiotaomicron} (A:271-452)
Probab=80.31 E-value=3.4 Score=21.64 Aligned_cols=45 Identities=18% Similarity=0.212 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCHHH----------HHHHHHHHHHCCCCC
Q ss_conf 999999999997799799983898631225----------999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFDRGKHLYCGR----------IAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FDR~g~~yHGr----------vka~ad~~R~~Gl~F 120 (120)
..-..+++.+.+.|++-+++|-|=+...|. ++.+++-+++.|++|
T Consensus 39 ~~~~~~~~~~~~~g~~~~~iDdgW~~~~~~~~~~~~fp~glk~l~~~~~~~G~k~ 93 (182)
T 3a24_A 39 PTYKAYIDFASANGIEYVILDEGWAVNLQADLMQVVKEIDLKELVDYAASKNVGI 93 (182)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSBCTTSCCTTCBCTTCCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEE
T ss_conf 8999999999987997799998605797666541368767699999999769769
No 20
>>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} (A:161-292)
Probab=78.24 E-value=5.3 Score=20.51 Aligned_cols=47 Identities=17% Similarity=0.187 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCC---CCHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999999977997999838986---31225999999999658789
Q gi|254780245|r 74 ATAVGNLLVERAVKVGVKSVYFDRGKH---LYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 74 A~~vG~~ia~r~~~~gI~~v~FDR~g~---~yHGrvka~ad~~R~~Gl~F 120 (120)
++..|..+++.+.++|..+|.|=-+.. --.-|+..|.+++++.|+.+
T Consensus 1 sy~a~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~g~~~ 50 (132)
T 1qpz_A 1 AFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKV 50 (132)
T ss_dssp HHHHHHHHHHHHHHHTCCCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 68889999999997599859998288555317899988999999859999
No 21
>>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} (A:110-241)
Probab=78.24 E-value=5.3 Score=20.51 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCC---CCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999999779979998389---8631225999999999658789
Q gi|254780245|r 74 ATAVGNLLVERAVKVGVKSVYFDRG---KHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 74 A~~vG~~ia~r~~~~gI~~v~FDR~---g~~yHGrvka~ad~~R~~Gl~F 120 (120)
++..|..+++.+.++|..+|.|=-+ ..--.-|+..|.+++++.|+.+
T Consensus 1 sy~a~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~g~~~ 50 (132)
T 1dbq_A 1 AFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKV 50 (132)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEECCC------CHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999986599669996376312478999976678999808997
No 22
>>3ksm_A ABC-type sugar transport system, periplasmic component; PSI- II, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis kctc 2396} (A:107-242)
Probab=75.09 E-value=3.1 Score=21.85 Aligned_cols=50 Identities=18% Similarity=0.125 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEECC---CCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 6789999999999999977997999838---9863122599999999965878
Q gi|254780245|r 70 NIVAATAVGNLLVERAVKVGVKSVYFDR---GKHLYCGRIAALADAVRKGGVS 119 (120)
Q Consensus 70 ni~aA~~vG~~ia~r~~~~gI~~v~FDR---~g~~yHGrvka~ad~~R~~Gl~ 119 (120)
|.++.+..|..+++.+.++|..+|.|=- +..--.-|...|.+++.+.|..
T Consensus 1 N~~~G~~a~~~~~~~l~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~ 53 (136)
T 3ksm_A 1 NYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQGFLDVLRKHDKI 53 (136)
T ss_dssp HHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHHHHHHHHTTCTTE
T ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 14679999999998732279847999537677640778987799999867986
No 23
>>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* (A:1-40,A:148-221,A:327-383)
Probab=73.10 E-value=7.3 Score=19.70 Aligned_cols=47 Identities=15% Similarity=0.124 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCCCH--HHHHHHHHHHHHCCCCC
Q ss_conf 999999999999977997999838986312--25999999999658789
Q gi|254780245|r 74 ATAVGNLLVERAVKVGVKSVYFDRGKHLYC--GRIAALADAVRKGGVSF 120 (120)
Q Consensus 74 A~~vG~~ia~r~~~~gI~~v~FDR~g~~yH--Grvka~ad~~R~~Gl~F 120 (120)
|-..|...|..+-+.|++-.++|++.+..- --..++++.+++.|++|
T Consensus 11 ~G~~g~~~a~~la~~g~~v~v~e~~~~~~~d~~l~~~~~~~a~~~Gv~i 59 (171)
T 2qcu_A 11 GGINGAGIAADAAGRGLSVLMLEAQDLACADARLVLANAQMVVRKGGEV 59 (171)
T ss_dssp CSHHHHHHHHHHHHTTCCEEEECSSSTTCSHHHHHHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 6799999999999789979999699774600787999998666514343
No 24
>>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum} (A:162-293)
Probab=70.75 E-value=8.2 Score=19.37 Aligned_cols=45 Identities=11% Similarity=0.126 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHCCCCEEEEC--CCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999997799799983--898631225999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFD--RGKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FD--R~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
..|.++++.+.++|..+|.|= ...+-..-|..+|.+++.+.|+.+
T Consensus 3 ~~~~~a~~~L~~~G~r~i~~i~~~~~~~~~~R~~gf~~a~~~~~~~~ 49 (132)
T 3h5o_A 3 DAGAAITRHLLSRGKRRIGFLGAQLDERVXKRLDGYRAALDAADCRD 49 (132)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEESCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 99999999999759970878640266542200025677776304554
No 25
>>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* (A:1-69,A:187-260,A:371-427)
Probab=68.10 E-value=9.4 Score=19.04 Aligned_cols=48 Identities=10% Similarity=0.104 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCCCH--HHHHHHHHHHHHCCCCC
Q ss_conf 9999999999999977997999838986312--25999999999658789
Q gi|254780245|r 73 AATAVGNLLVERAVKVGVKSVYFDRGKHLYC--GRIAALADAVRKGGVSF 120 (120)
Q Consensus 73 aA~~vG~~ia~r~~~~gI~~v~FDR~g~~yH--Grvka~ad~~R~~Gl~F 120 (120)
.+-.+|-..|..+...|++-.++|+..+.-- --..++++.+++.|++|
T Consensus 39 G~G~~g~~~a~~~~~~g~~v~~~~~~~~~~~p~~l~~~l~~~~~~~Gv~i 88 (200)
T 2rgh_A 39 GGGITGAGVAVQAAASGIKTGLIEXQDFAEGDARLVIDNIKKAAEDGAYL 88 (200)
T ss_dssp CCSHHHHHHHHHHHHTTCCEEEECSSSTTCSHHHHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCCCHCHHHHHHHHHHHHHHHHCC
T ss_conf 96199999999999779989999699785403788888877777654202
No 26
>>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B* (A:105-237,A:281-313)
Probab=66.39 E-value=9.6 Score=18.99 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHC--CCCEEEECCCCCCCHH---HHHHHHHHHHHCCCC
Q ss_conf 9999999999977--9979998389863122---599999999965878
Q gi|254780245|r 76 AVGNLLVERAVKV--GVKSVYFDRGKHLYCG---RIAALADAVRKGGVS 119 (120)
Q Consensus 76 ~vG~~ia~r~~~~--gI~~v~FDR~g~~yHG---rvka~ad~~R~~Gl~ 119 (120)
..|.++|+.+.+. |-.+|.|-++..-+.. |...|-+++++.|++
T Consensus 3 ~aG~~aae~L~~~~~g~~kI~~l~g~~~~~~~~~R~~Gf~~~l~~~gi~ 51 (166)
T 2h3h_A 3 QAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIE 51 (166)
T ss_dssp HHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHHHHTTSSCE
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 8899999999997430365421367776067788875434320355433
No 27
>>2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase family 29; 1.73A {Bacteroides thetaiotaomicron} PDB: 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A* (A:1-351)
Probab=66.33 E-value=7.1 Score=19.75 Aligned_cols=41 Identities=20% Similarity=0.244 Sum_probs=31.8
Q ss_pred HHHHHHHHCCCCEEEEC---CCCCC---------------CH-HHHHHHHHHHHHCCCCC
Q ss_conf 99999997799799983---89863---------------12-25999999999658789
Q gi|254780245|r 80 LLVERAVKVGVKSVYFD---RGKHL---------------YC-GRIAALADAVRKGGVSF 120 (120)
Q Consensus 80 ~ia~r~~~~gI~~v~FD---R~g~~---------------yH-Grvka~ad~~R~~Gl~F 120 (120)
..++.++++|.+-|++- -.||- ++ --|++|++++|+.||+|
T Consensus 82 ~wv~~~k~aGakyvvltakHHdGf~lw~S~~~~~~~~~~~~~rDiv~el~~A~rk~Glk~ 141 (351)
T 2wvv_A 82 KWAKMAKEMGTKYVKITTKHHEGFCLWPSKYTKYTVANTPYKRDILGELVKAYNDEGIDV 141 (351)
T ss_dssp HHHHHHHHHTCSEEEEEEECTTCCBSSCCTTCSCBGGGSTTCSCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 999999984996799766623785344789999855467887664899999998659865
No 28
>>3cs3_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; 2.40A {Enterococcus faecalis V583} (A:102-231)
Probab=64.93 E-value=11 Score=18.66 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHCCCCEEEEC---CCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999997799799983---898631225999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFD---RGKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FD---R~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
..|..+++.+.++|..+|.|= .......-|...|-+++++.|+.+
T Consensus 3 ~~~~~a~~~L~~~G~r~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~ 50 (130)
T 3cs3_A 3 GGATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVSTRELTRFGIPY 50 (130)
T ss_dssp HHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCE
T ss_pred CHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 001223321012223454334578666233432268999999849974
No 29
>>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution; 1.04A {Bos taurus} (A:1-41,A:233-288,A:396-433)
Probab=64.41 E-value=11 Score=18.60 Aligned_cols=45 Identities=16% Similarity=0.049 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999997799799983898631225999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
..|-..|..+...|.+-.+.|+..+.=..-..++.+.+++.|++|
T Consensus 16 ~~g~~~a~~l~~~g~~v~~ie~~~~~d~~l~~~l~~~l~~~Gv~i 60 (135)
T 1d5t_A 16 LTECILSGIMSVNGKKVLHMDRNPYYLGELPQGFARLSAIYGGTY 60 (135)
T ss_dssp HHHHHHHHHHHHTTCCEEEECSSSSSTTHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 899999999998899799988999996899999999998526909
No 30
>>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein structure initiative; 1.90A {Bacteroides thetaiotaomicron} (A:1-327)
Probab=64.14 E-value=11 Score=18.57 Aligned_cols=40 Identities=10% Similarity=0.169 Sum_probs=31.6
Q ss_pred HHHHHHHCCCCEEEEC---CCCC--------C-------CH----HHHHHHHHHHHHCCCCC
Q ss_conf 9999997799799983---8986--------3-------12----25999999999658789
Q gi|254780245|r 81 LVERAVKVGVKSVYFD---RGKH--------L-------YC----GRIAALADAVRKGGVSF 120 (120)
Q Consensus 81 ia~r~~~~gI~~v~FD---R~g~--------~-------yH----Grvka~ad~~R~~Gl~F 120 (120)
.++.++++|.+-|+|. ..|| . |. --|++|++++|+.||+|
T Consensus 59 wv~~~k~aGakyvvltakHHdGf~lw~S~~t~~~v~~s~~~~~~rDlv~el~~A~r~~Glk~ 120 (327)
T 3eyp_A 59 WMQTLKAAGIPAAILTAKHADGFCLWPSKYTDYSVKNAAWKNGKGDVVREFVDACEEYGLKA 120 (327)
T ss_dssp HHHHHHHTTCCEEEEEEECTTCCBSSCCTTCSSBGGGSSGGGGTCCHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHCCCCEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEE
T ss_conf 99999985996899620446734567889988765557665888778999999886346626
No 31
>>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.99A {Actinobacillus succinogenes 130Z} (A:108-238)
Probab=62.31 E-value=12 Score=18.37 Aligned_cols=45 Identities=18% Similarity=0.252 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEC---CCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999997799799983---898631225999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFD---RGKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FD---R~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
..|..+++.+.++|..+|.|= -......-|...|.+++.+.|+.+
T Consensus 3 ~a~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~r~~gf~~a~~~~~~~~ 50 (131)
T 3c3k_A 3 AASEYVVDQLVKSGKKRIALINHDLAYQYAQHRESGYLNRLKFHGLDY 50 (131)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 200232022211576553444455552044443466767899809863
No 32
>>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} (A:99-232)
Probab=61.22 E-value=13 Score=18.25 Aligned_cols=45 Identities=16% Similarity=0.247 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHCCCCEEEEC--------CCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999997799799983--------898631225999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFD--------RGKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FD--------R~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
..|.++++.+.++|-.+|.|= .......-|..+|.+++.++|+.|
T Consensus 2 ~a~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~~~~~R~~g~~~a~~~~~~~~ 54 (134)
T 2h0a_A 2 LGGRLAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPF 54 (134)
T ss_dssp HHHHHHHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 43688999999852871499944786421000589988876531133210112
No 33
>>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} (A:220-313)
Probab=59.72 E-value=14 Score=18.10 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=19.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 86678999999999999997799
Q gi|254780245|r 68 GANIVAATAVGNLLVERAVKVGV 90 (120)
Q Consensus 68 ~~ni~aA~~vG~~ia~r~~~~gI 90 (120)
.++++.+..+|..+|+.++++|-
T Consensus 58 ~~~~~~a~~lg~~la~~l~~~Ga 80 (94)
T 1gtk_A 58 RGAPQDAEQMGISLAEELLNNGA 80 (94)
T ss_dssp EECGGGHHHHHHHHHHHHHHTTH
T ss_pred EECHHHHHHHHHHHHHHHHHHCH
T ss_conf 97789999999999999998379
No 34
>>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A (A:159-242)
Probab=59.45 E-value=5 Score=20.66 Aligned_cols=15 Identities=40% Similarity=0.607 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHCCCC
Q ss_conf 599999999965878
Q gi|254780245|r 105 RIAALADAVRKGGVS 119 (120)
Q Consensus 105 rvka~ad~~R~~Gl~ 119 (120)
|+|||-|++|+.||.
T Consensus 69 RikALEdalR~HGLI 83 (84)
T 3c9i_A 69 RTKAMEDALRAHGLI 83 (84)
T ss_dssp HHHHHHHHHHHHTSB
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999999999875666
No 35
>>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} (A:1-66,A:169-242,A:352-404)
Probab=58.64 E-value=14 Score=17.99 Aligned_cols=47 Identities=9% Similarity=0.027 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCCC----H--H-------HHHHHHHHHHHCCCCC
Q ss_conf 99999999999997799799983898631----2--2-------5999999999658789
Q gi|254780245|r 74 ATAVGNLLVERAVKVGVKSVYFDRGKHLY----C--G-------RIAALADAVRKGGVSF 120 (120)
Q Consensus 74 A~~vG~~ia~r~~~~gI~~v~FDR~g~~y----H--G-------rvka~ad~~R~~Gl~F 120 (120)
|-..|...|..+.+.|++-++||++.+.+ + | -+.+|.+.+++.|++|
T Consensus 26 ~G~aGl~~A~~l~~~g~~v~i~e~~~~~gg~~~~~~~~~~~d~~l~~~l~~~~~~~Gv~i 85 (193)
T 3da1_A 26 GGITGAGIALDAQVRGIQTGLVEXNDFASGTSSRSTKLVHGDARLTLEIXKEAVARGAVA 85 (193)
T ss_dssp CSHHHHHHHHHHHTTTCCEEEEESSSTTCSGGGSSCCEECCHHHHHHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 569999999999968998899969976542546505165736556788888774179730
No 36
>>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcription, transcription regulation; 2.35A {Burkholderia thailandensis E264} (A:109-240)
Probab=56.74 E-value=15 Score=17.79 Aligned_cols=45 Identities=16% Similarity=0.096 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCC---CHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999779979998389863---1225999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFDRGKHL---YCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FDR~g~~---yHGrvka~ad~~R~~Gl~F 120 (120)
..|..+++.+.++|..+|.|=-+... -.-|...|.+++.+.|+.+
T Consensus 3 ~~~~~a~~~L~~~G~r~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~ 50 (132)
T 3egc_A 3 RGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPV 50 (132)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 577888999997699558661277212203355589999999839985
No 37
>>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum} (A:102-230)
Probab=55.90 E-value=16 Score=17.71 Aligned_cols=45 Identities=11% Similarity=0.118 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHCCCCEEEECCC-CCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999779979998389-8631225999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFDRG-KHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FDR~-g~~yHGrvka~ad~~R~~Gl~F 120 (120)
..|..+++.+.++|..+|+|=.+ ..-.+-|...|.+++++.|+.+
T Consensus 3 ~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~R~~g~~~a~~~~g~~~ 48 (129)
T 3gyb_A 3 RGAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEATXRAHGLEP 48 (129)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHCCHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 4333100000110223220001232023566777778999974301
No 38
>>3e61_A Putative transcriptional repressor of ribose operon; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp} (A:101-231)
Probab=55.63 E-value=16 Score=17.68 Aligned_cols=46 Identities=15% Similarity=0.108 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEEC---CCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999997799799983---898631225999999999658789
Q gi|254780245|r 75 TAVGNLLVERAVKVGVKSVYFD---RGKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 75 ~~vG~~ia~r~~~~gI~~v~FD---R~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
...|..+++.+.++|..+|.|= ....-..-|...|-+++.+.|+.+
T Consensus 7 ~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~ 55 (131)
T 3e61_A 7 FKGGQLQAEVVRKGKGKNVLIVHENLLIDAFHQRVQGIKYILDQQRIDY 55 (131)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESCTTSHHHHHHHHHHHHHHHC---CE
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 8899999999983776048996166766512333067999999859982
No 39
>>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} (A:1-146)
Probab=55.57 E-value=14 Score=17.95 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=33.8
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCH-HHHHHHHHHHHHCCCCC
Q ss_conf 9999999977997999838986312-25999999999658789
Q gi|254780245|r 79 NLLVERAVKVGVKSVYFDRGKHLYC-GRIAALADAVRKGGVSF 120 (120)
Q Consensus 79 ~~ia~r~~~~gI~~v~FDR~g~~yH-Grvka~ad~~R~~Gl~F 120 (120)
+.+.+.+.+-+|+.|++|...-.|+ -+-..+++.+++.|++|
T Consensus 90 ~~l~~l~~~~~~~~v~~~~~~~~~~~~~d~~i~~~l~~~gi~~ 132 (146)
T 1np7_A 90 QVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEA 132 (146)
T ss_dssp HHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999985996899936646401446799999887417320
No 40
>>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis} (A:164-293)
Probab=54.47 E-value=17 Score=17.57 Aligned_cols=46 Identities=11% Similarity=0.177 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEECC---CCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999977997999838---98631225999999999658789
Q gi|254780245|r 75 TAVGNLLVERAVKVGVKSVYFDR---GKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 75 ~~vG~~ia~r~~~~gI~~v~FDR---~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
+..|..+++.+.++|..+|.|=- .-.-..=|...|.+++++.|+.+
T Consensus 2 ~~a~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~ 50 (130)
T 2o20_A 2 HLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEF 50 (130)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999987188764433478778219999999999999849998
No 41
>>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus pcc 6301} (A:1-196)
Probab=53.47 E-value=17 Score=17.47 Aligned_cols=43 Identities=21% Similarity=0.393 Sum_probs=34.8
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCH-HHHHHHHHHHHHCCCCC
Q ss_conf 99999999977997999838986312-25999999999658789
Q gi|254780245|r 78 GNLLVERAVKVGVKSVYFDRGKHLYC-GRIAALADAVRKGGVSF 120 (120)
Q Consensus 78 G~~ia~r~~~~gI~~v~FDR~g~~yH-Grvka~ad~~R~~Gl~F 120 (120)
.+.+.+.+.+.+++.|++++.-..|. -+.+++++.+.+.|+.|
T Consensus 81 ~~~l~~l~~~~~~~~v~~~~~~~~~~~~~~~~i~~~l~~~~i~~ 124 (196)
T 1owl_A 81 QHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRA 124 (196)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999984998899960146404566655433331158300
No 42
>>3g1w_A Sugar ABC transporter; sugar-binding protein, target 11229F, transport protein, structural genomics, PSI-2; 2.02A {Bacillus halodurans c-125} (A:109-242)
Probab=52.88 E-value=13 Score=18.28 Aligned_cols=45 Identities=9% Similarity=0.028 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHC--CCCEEEE--CCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999977--9979998--3898631225999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKV--GVKSVYF--DRGKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~--gI~~v~F--DR~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
..|+.+++.+.+. |-.+|+| ..+.+.-.-|+..|-+++.++|+.+
T Consensus 3 ~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~Gf~~~~~~~~~~~ 51 (134)
T 3g1w_A 3 NAGXNAAYKXAELLDGEGEVAVITLPNQLNHQERTTGFKETLEAEFPAI 51 (134)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHCTTE
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 6689999999997145761999931243128999999999998757766
No 43
>>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, protein structure initiative; 2.14A {Rhodococcus jostii RHA1} (A:110-239)
Probab=52.82 E-value=18 Score=17.41 Aligned_cols=45 Identities=20% Similarity=0.144 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEC--CCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999997799799983--898631225999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFD--RGKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FD--R~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
.-|..+++.+.++|..+|.|= ...+...-|...|.+++.+.|+.+
T Consensus 3 ~a~~~a~~~L~~~G~r~i~~i~~~~~~~~~~r~~g~~~a~~~~~~~~ 49 (130)
T 3k9c_A 3 AGITLAVDHLTELGHRNIAHIDGADAPGGADRRAGFLAAXDRHGLSA 49 (130)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHHHHHHHTTCGG
T ss_pred CCCCHHHHHEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 11100122100023531121012246531257788988887632554
No 44
>>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi} (A:169-300)
Probab=51.88 E-value=18 Score=17.32 Aligned_cols=45 Identities=18% Similarity=0.329 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEC--C-CCCC-CHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999997799799983--8-9863-1225999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFD--R-GKHL-YCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FD--R-~g~~-yHGrvka~ad~~R~~Gl~F 120 (120)
..|.++++.+.++|..+|.|= . .... -.-|+..|.+++++.|+.+
T Consensus 3 ~a~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~r~~g~~~a~~~~~~~~ 51 (132)
T 3kjx_A 3 RAGREXAQAILKAGYRRIGFXGTKXPLDYRARKRFEGFTEVLGKNGVEI 51 (132)
T ss_dssp HHHHHHHHHHHHHTCCSCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999983998641006666556216778888898999729863
No 45
>>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics, protein structure initiative; 1.84A {Clostridium acetobutylicum atcc 824} (A:111-244)
Probab=51.70 E-value=18 Score=17.30 Aligned_cols=45 Identities=16% Similarity=0.049 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEC---CCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999997799799983---898631225999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFD---RGKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FD---R~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
..|..+++.+.++|...|.|= ..-....-|+..|-+++.+.|+.+
T Consensus 3 ~~~~~a~~~L~~~G~r~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~ 50 (134)
T 3g85_A 3 KXGEKASLLFAKKRYKSAAAILTESLNDAXDNRNKGFIETCHKNGIKI 50 (134)
T ss_dssp HHHHHHHHHHHHTTCCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 644556543310222222223566442177777765410111012234
No 46
>>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1} (A:109-239)
Probab=51.55 E-value=19 Score=17.29 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHCCCCEEEECC---CCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999977997999838---98631225999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFDR---GKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FDR---~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
.-|..+++.+.++|..+|.|=- ......-|..+|.+++++.|+.+
T Consensus 3 ~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~ 50 (131)
T 3clk_A 3 DIGYQATNLLINEGHRQIGIAGIDQYPYTGRKRLAGYKKALKEANIAI 50 (131)
T ss_dssp HHHHHHHHHHHTTTCCSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 003566544222332112234788322201445677777788708653
No 47
>>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G* (A:117-249)
Probab=48.69 E-value=21 Score=17.02 Aligned_cols=45 Identities=16% Similarity=0.160 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHCCCCEEEECCC--C--CCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999779979998389--8--631225999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFDRG--K--HLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FDR~--g--~~yHGrvka~ad~~R~~Gl~F 120 (120)
.-|..+++.+.++|-.++.|=-+ . .-+.-|...|.+++++.|+.+
T Consensus 3 ~a~~~a~~~L~~~G~r~i~~i~~~~~~~~~~~~R~~gf~~a~~~~~~~~ 51 (133)
T 2fep_A 3 QAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPF 51 (133)
T ss_dssp HHHHHHHHHHHHTTCSSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 7899999999862994367860576655310001368899999718998
No 48
>>3k4h_A Putative transcriptional regulator; structural genomics, protein structure initiative; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98} (A:115-246)
Probab=48.68 E-value=21 Score=17.02 Aligned_cols=45 Identities=18% Similarity=0.275 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHCCCCEEEECC---CCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999977997999838---98631225999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFDR---GKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FDR---~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
..|..+++.+.++|..+|.|=- ..+--.-|+..|.+++.+.|+.+
T Consensus 3 ~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~g~~~ 50 (132)
T 3k4h_A 3 TAAREVAEYLISLGHKQIAFIGGGSDLLVTRDRLAGXSDALKLADIVL 50 (132)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 888887777765315406999437775066655455411034302466
No 49
>>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, sugar binding protein, structural genomics; 2.05A {Burkholderia phymatum STM815} (A:111-243)
Probab=48.11 E-value=21 Score=16.96 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEC---CCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999997799799983---898631225999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFD---RGKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FD---R~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
..+..+++.+.++|-.+|.|= ....-.--|...|.+++.+.|+.+
T Consensus 4 ~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~r~~g~~~a~~~~~~~~ 51 (133)
T 2rgy_A 4 RGGELAAATLIEHGHRKLAVISGPFTASDNVERLDGFFDELARHGIAR 51 (133)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCG
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 110002456765300110002467554431111213678998728864
No 50
>>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 2q6u_A* (A:1-41,A:153-211,A:330-397)
Probab=48.01 E-value=21 Score=16.95 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCH-HHHHHHHHHHHHCCCCC
Q ss_conf 9999999999977997999838986312-25999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFDRGKHLYC-GRIAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FDR~g~~yH-Grvka~ad~~R~~Gl~F 120 (120)
..|-..|..+-..|.+-.++||+.+.-- --+.++++.+++.|+++
T Consensus 14 ~~g~~~a~~~~~~g~~v~~~~~~~~~~~~~l~~~l~~~~~~~Gv~i 59 (168)
T 2oln_A 14 PVGLATAWQVAERGHRVLVLERHTFFNERGTLAALFTLAQAAGATL 59 (168)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESSCTTCSHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCCE
T ss_conf 9999999999988996899908998876433221001101343212
No 51
>>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} (A:160-293)
Probab=47.55 E-value=21 Score=16.91 Aligned_cols=45 Identities=13% Similarity=0.172 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHCCCCEEEECC--CCC--CCHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999977997999838--986--31225999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFDR--GKH--LYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FDR--~g~--~yHGrvka~ad~~R~~Gl~F 120 (120)
.-|.++++.+.++|-.++.|=- ... ....|...|-+++++.|+.+
T Consensus 4 ~~~~~a~~~L~~~G~r~i~~i~~~~~~~~~~~~r~~g~~~a~~~~~~~~ 52 (134)
T 2hsg_A 4 QAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPV 52 (134)
T ss_dssp HHHHHHHHHHHTTTCSCEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 9999986432136871479995364333310268899999999859998
No 52
>>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor; HET: T6P; 2.50A {Escherichia coli} (A:99-223)
Probab=46.68 E-value=22 Score=16.83 Aligned_cols=45 Identities=11% Similarity=0.035 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHCCCCEEEECCC---C-CCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999779979998389---8-631225999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFDRG---K-HLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FDR~---g-~~yHGrvka~ad~~R~~Gl~F 120 (120)
..|.++++.+.++|..+|.|=.+ . .-.+-|+.+|.+++++.|+.+
T Consensus 3 ~a~~~a~~~l~~~G~r~i~~i~~~~~~~~~~~~R~~g~~~~~~~~~~~~ 51 (125)
T 1byk_A 3 GAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHP 51 (125)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999985114432357666765077777677999999739976
No 53
>>3dme_A Conserved exported protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} (A:1-42,A:149-222,A:325-369)
Probab=46.57 E-value=22 Score=16.82 Aligned_cols=46 Identities=11% Similarity=0.125 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCC---HHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999997799799983898631---225999999999658789
Q gi|254780245|r 75 TAVGNLLVERAVKVGVKSVYFDRGKHLY---CGRIAALADAVRKGGVSF 120 (120)
Q Consensus 75 ~~vG~~ia~r~~~~gI~~v~FDR~g~~y---HGrvka~ad~~R~~Gl~F 120 (120)
-.+|-.+|..+-+.|.+-.+|+|....- +--...+.+.+.+.|++|
T Consensus 13 g~~g~~~a~~~~~~g~~v~~~e~~~~~~~~D~ei~~~l~~~l~~~GI~i 61 (161)
T 3dme_A 13 GVVGLAIARALAAGGHEVLVAEAAEGIGTGSHALMLAYQGDAESDGAQL 61 (161)
T ss_dssp SHHHHHHHHHHHHTTCCEEEECSSSSSSCSHHHHHHHHHHHHHHTTCEE
T ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCCCCCEHHHHHHHHHHHHHCHHEE
T ss_conf 0999999999997899589997899986623011122210000000102
No 54
>>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} (A:1-142)
Probab=45.98 E-value=22 Score=16.82 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=33.7
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCH-HHHHHHHHHHHHCCCCC
Q ss_conf 99999999977997999838986312-25999999999658789
Q gi|254780245|r 78 GNLLVERAVKVGVKSVYFDRGKHLYC-GRIAALADAVRKGGVSF 120 (120)
Q Consensus 78 G~~ia~r~~~~gI~~v~FDR~g~~yH-Grvka~ad~~R~~Gl~F 120 (120)
.+.+.+.+.+-+|+.|++|+.--.|. -+...++..+.+.|++|
T Consensus 92 ~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~i~~~l~~~~I~~ 135 (142)
T 3fy4_A 92 GEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYASSTGVEV 135 (142)
T ss_dssp HHHHHHHHTTSCEEEEEECCCCSHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999975999899961357899999887666665238853
No 55
>>3eyw_A C-terminal domain of glutathione-regulated potassium-efflux system protein KEFC fused...; KTN, RCK, K+ channel, K+ transport, K+ efflux; HET: FMN NAD; 2.40A {Escherichia coli K12} (A:1-123)
Probab=44.91 E-value=24 Score=16.67 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999997799799983898631225999999999658789
Q gi|254780245|r 75 TAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 75 ~~vG~~ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
-.+|..+|+.+.+.|.+-+++||+. .-++.+++.|..+
T Consensus 13 G~~G~~ia~~L~~~G~~V~v~d~~~--------~~~~~~~~~g~~~ 50 (123)
T 3eyw_A 13 GRFGQITGRLLLSSGVKMVVLDHDP--------DHIETLRKFGMKV 50 (123)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEESCH--------HHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHCCCCEEEEECCH--------HHHHHHHHCCCEE
T ss_conf 8899999999996899889998999--------9999999769909
No 56
>>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} (A:187-318)
Probab=44.88 E-value=18 Score=17.36 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHCCCCEE-EECCCCCCCHH
Q ss_conf 999999999997799799-98389863122
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSV-YFDRGKHLYCG 104 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v-~FDR~g~~yHG 104 (120)
.+|...|+.+...|.+.| ++|+.|.+|.+
T Consensus 12 ~vG~~~a~~l~~~Ga~~V~v~D~~g~~~~~ 41 (132)
T 2a9f_A 12 SAGLSITRKLLAAGATKVTVVDKFGIINEQ 41 (132)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEETTEECCTT
T ss_pred CHHHHHHHHHHHHCCCCCEEECCCCCCCCC
T ss_conf 101057665776366764012240001047
No 57
>>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp} (A:115-246)
Probab=44.76 E-value=24 Score=16.65 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHCCCCEEEECCC---CCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999779979998389---863122599999999965878
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFDRG---KHLYCGRIAALADAVRKGGVS 119 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FDR~---g~~yHGrvka~ad~~R~~Gl~ 119 (120)
..|..+++.+.++|-.+|.|=-+ -...--|.+.|-+++.+.|+.
T Consensus 3 ~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~a~~~~g~~ 49 (132)
T 3hcw_A 3 LASENLTRHVIEQGVDELIFITEKGNFEVSKDRIQGFETVASQFNLD 49 (132)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 88888888752013223322455543201455568899999874985
No 58
>>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, structural genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus JCSC1435} (A:128-256)
Probab=44.12 E-value=24 Score=16.59 Aligned_cols=45 Identities=11% Similarity=0.062 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHCCCCEEEEC---CCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999997799799983---898631225999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFD---RGKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FD---R~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
..|..+++.++++|-.+|.|= .......-|..+|-+++.+.|+.+
T Consensus 3 ~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~ 50 (129)
T 3huu_A 3 DAAYQLTQYLYHLGHRHILFLQESGHYAVTEDRSVGFKQYCDDVKISN 50 (129)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEESSCBHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999999987098765556799766079999999999999859996
No 59
>>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} (A:163-292)
Probab=44.03 E-value=24 Score=16.58 Aligned_cols=45 Identities=16% Similarity=0.069 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHCCCCEEEECC---CCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999977997999838---98631225999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFDR---GKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FDR---~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
..|.++++.+.++|-.+|.|=- ....-.=|+..|.+++.+.|+.+
T Consensus 3 ~~~~~a~~~l~~~G~r~I~~i~~~~~~~~~~~R~~g~~~~~~~~~~~~ 50 (130)
T 1jye_A 3 DGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQP 50 (130)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 899999999997599669999477432289999999999999759986
No 60
>>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structural genomics, protein structure initiative; 2.20A {Bacteroides fragilis nctc 9343} (A:117-253)
Probab=41.36 E-value=27 Score=16.34 Aligned_cols=47 Identities=6% Similarity=-0.003 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHH--CCCCEEEEC---CCC----CCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999997--799799983---898----631225999999999658789
Q gi|254780245|r 74 ATAVGNLLVERAVK--VGVKSVYFD---RGK----HLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 74 A~~vG~~ia~r~~~--~gI~~v~FD---R~g----~~yHGrvka~ad~~R~~Gl~F 120 (120)
|+..|.++++.+.+ .|-.+|.|= ..| +--+.|+..|-|++.++|+++
T Consensus 1 sy~~G~~~~~~l~~~~~g~~~i~~i~~~~~g~~~~~~~~~R~~Gf~~~l~~~g~~~ 56 (137)
T 3gbv_A 1 SHQSGYFAARXLXLLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYXQEHHPAC 56 (137)
T ss_dssp HHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCC
T ss_conf 88999999999999708995599984035788776589999964121210147873
No 61
>>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCSG, protein structure initiative, PSI; 2.61A {Thermotoga maritima MSB8} (A:168-323)
Probab=41.31 E-value=24 Score=16.59 Aligned_cols=33 Identities=30% Similarity=0.278 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHCCCCEE-EECCCCCCCHHHH
Q ss_conf 99999999999997799799-9838986312259
Q gi|254780245|r 74 ATAVGNLLVERAVKVGVKSV-YFDRGKHLYCGRI 106 (120)
Q Consensus 74 A~~vG~~ia~r~~~~gI~~v-~FDR~g~~yHGrv 106 (120)
+-.+|..+|+.+.+.|-..| +-|+.|+.|+|+=
T Consensus 33 ~G~vG~~~a~~l~~~Ga~~i~v~d~~g~~~~~~~ 66 (156)
T 1vl6_A 33 IGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDP 66 (156)
T ss_dssp CSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSG
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCC
T ss_conf 6378899999999847861599950116755886
No 62
>>3hg3_A Alpha-galactosidase A; glycoprotein, carbohydrate-binding protein, glycosidase, lysosomal enzyme, (beta/alpha)8 barrel, disease mutation; HET: NAG BMA MAN GLA GLC 2PE; 1.90A {Homo sapiens} PDB: 3gxp_A* 1r47_A* 1r46_A* 3gxn_A* 3gxt_A* 3hg2_A* 3hg4_A* 3hg5_A* (A:1-239)
Probab=40.85 E-value=27 Score=16.29 Aligned_cols=46 Identities=17% Similarity=0.181 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCC---------------CCCHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999997799799983898---------------631225999999999658789
Q gi|254780245|r 75 TAVGNLLVERAVKVGVKSVYFDRGK---------------HLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 75 ~~vG~~ia~r~~~~gI~~v~FDR~g---------------~~yHGrvka~ad~~R~~Gl~F 120 (120)
....+.+.+.+++.|++-+..|-|= -+|-.-++++++-+++.|++|
T Consensus 40 ~~~~~~~~~~~~~~G~~~~~iDdgW~~~~~~~~G~~~~d~~kFP~gl~~l~~~~~~~G~~~ 100 (239)
T 3hg3_A 40 EMAELMVSEGWKDAGYEYLCIDDCWMAPQRDSEGRLQADPQRFPHGIRQLANYVHSKGLKL 100 (239)
T ss_dssp HHHHHHHHTTHHHHTCCEEECCSSCBCSSCCTTSCCCBCTTTSTTHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHCCCHHHCCEEEEEECCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCEE
T ss_conf 9999999867543198599994886787878789871074248752489999999769804
No 63
>>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans} (A:110-229)
Probab=39.95 E-value=25 Score=16.53 Aligned_cols=20 Identities=5% Similarity=0.132 Sum_probs=10.7
Q ss_pred CCCCHHHHHHHHHHHHHCCC
Q ss_conf 86312259999999996587
Q gi|254780245|r 99 KHLYCGRIAALADAVRKGGV 118 (120)
Q Consensus 99 g~~yHGrvka~ad~~R~~Gl 118 (120)
++.-..|.+.|.+++++.|+
T Consensus 25 ~~~~~~R~~Gf~~~~~~~~~ 44 (120)
T 2hqb_A 25 AFPWQPEVEGFVDGAKYXNE 44 (120)
T ss_dssp SCTTCHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHCC
T ss_conf 40162888899999874145
No 64
>>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grg_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grt_A* 1xan_A* 5grt_A* 2grt_A* 4grt_A* ... (A:186-247)
Probab=39.69 E-value=29 Score=16.18 Aligned_cols=47 Identities=13% Similarity=0.131 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCCC----HHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999997799799983898631----225999999999658789
Q gi|254780245|r 74 ATAVGNLLVERAVKVGVKSVYFDRGKHLY----CGRIAALADAVRKGGVSF 120 (120)
Q Consensus 74 A~~vG~~ia~r~~~~gI~~v~FDR~g~~y----HGrvka~ad~~R~~Gl~F 120 (120)
|-.+|-.+|+.+...|++-.+++++.... .--...+.+.+.+.|++|
T Consensus 10 ~G~iG~E~A~~l~~~g~~Vtive~~~~il~~~d~~~~~~~~~~l~~~GI~~ 60 (62)
T 3dk9_A 10 AGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEV 60 (62)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEE
T ss_pred CCCCCCEEEEEEEECCCCCCCEECCCCCCCCCCCCCCHHHHHHHHCCCCEE
T ss_conf 963330220001201234431010221123542111024566541232101
No 65
>>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* (A:1-163)
Probab=39.17 E-value=29 Score=16.13 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=33.5
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCH-HHHHHHHHHHHHCCCCC
Q ss_conf 9999999977997999838986312-25999999999658789
Q gi|254780245|r 79 NLLVERAVKVGVKSVYFDRGKHLYC-GRIAALADAVRKGGVSF 120 (120)
Q Consensus 79 ~~ia~r~~~~gI~~v~FDR~g~~yH-Grvka~ad~~R~~Gl~F 120 (120)
+.|-+.+.+.+|+.|++|+.--.|. =+..++.+.+.+.|++|
T Consensus 114 ~~l~~l~~~~~i~~V~~~~~~~~~~~~~d~~i~~~l~~~~i~~ 156 (163)
T 2wq7_A 114 EVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKAEGVRV 156 (163)
T ss_dssp HHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEE
T ss_conf 9999999976997899951357999999999999987548757
No 66
>>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structural genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp} (A:109-244,A:291-303)
Probab=38.50 E-value=30 Score=16.07 Aligned_cols=45 Identities=13% Similarity=-0.037 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHC--CCCEEEECCCCCCC---HHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999977--99799983898631---225999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKV--GVKSVYFDRGKHLY---CGRIAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~--gI~~v~FDR~g~~y---HGrvka~ad~~R~~Gl~F 120 (120)
..|++.++.+.++ |-.+|.|=.+..-+ --|+..|.+++++.|+++
T Consensus 3 ~~g~~a~~~l~~~~~g~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~g~~~ 52 (149)
T 3d02_A 3 KFAAEYVEHXAKRXGGKGGYVIYVGSLTVPQHNLWADLLVKYQKEHYPDX 52 (149)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHHHHHHHHHHHHCTTE
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999956998159994288886689999999999997528865
No 67
>>3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf} (A:156-285)
Probab=37.11 E-value=31 Score=15.94 Aligned_cols=45 Identities=11% Similarity=0.125 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHCCCCEEEECC---CCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999977997999838---98631225999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFDR---GKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FDR---~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
..|.++++.+.++|..+|.|=- ...-..=|...|.+++++.|+.+
T Consensus 3 ~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~ 50 (130)
T 3ctp_A 3 NGGRMAFDHLYEKGCRKILHIKGPEVFEATELRYKGFLDGARAKDLEI 50 (130)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECCTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999998699669996463454168888876201366513562
No 68
>>1vli_A Spore coat polysaccharide biosynthesis protein SPSE; 2636322, structural genomics, JCSG, protein structure initiative, BSU37870, PSI; 2.38A {Bacillus subtilis} (A:1-300)
Probab=35.07 E-value=34 Score=15.74 Aligned_cols=45 Identities=29% Similarity=0.392 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEC---------CCCCCCHH--------------------HHHHHHHHHHHCCCCC
Q ss_conf 999999999997799799983---------89863122--------------------5999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFD---------RGKHLYCG--------------------RIAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FD---------R~g~~yHG--------------------rvka~ad~~R~~Gl~F 120 (120)
.+.+.+.+.+++.|...|.|- +..|.|.| -.+.|.+.+++.||.|
T Consensus 44 ~~a~~~i~~a~~aGadavKfQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~~Gi~~ 117 (300)
T 1vli_A 44 DQAFALIDAAAEAGADAVKFQXFQADRXYQKDPGLYKTAAGKDVSIFSLVQSXEXPAEWILPLLDYCREKQVIF 117 (300)
T ss_dssp HHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCHHHHCCCCHHHCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCEE
T ss_conf 99999999999809899991150678707886342456778886431022210210345555544432134301
No 69
>>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str} (A:115-251)
Probab=34.27 E-value=35 Score=15.66 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHCCCCEEEECC---CCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999977997999838---98631225999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFDR---GKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FDR---~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
..|..+++.+.++|-..|.|=- ...--+-|+..|.+++.+.|+.+
T Consensus 3 ~~~~~~~~~L~~~G~r~i~~i~~~~~~~~~~~r~~g~~~a~~~~~~~~ 50 (137)
T 3kke_A 3 KGGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEGYLETLASAGLRS 50 (137)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999999998287727742688777459999999999999819975
No 70
>>2jui_A PLNE; ampiphilic alpha helix, toxin; NMR {Lactobacillus plantarum} (A:)
Probab=34.14 E-value=24 Score=16.60 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=18.2
Q ss_pred ECCCCCCCHHHHHHHHHHHHH
Q ss_conf 838986312259999999996
Q gi|254780245|r 95 FDRGKHLYCGRIAALADAVRK 115 (120)
Q Consensus 95 FDR~g~~yHGrvka~ad~~R~ 115 (120)
|.||||-|---|.-+.|++-.
T Consensus 1 fnrggynfgksvrhvvdaigs 21 (33)
T 2jui_A 1 FNRGGYNFGKSVRHVVDAIGS 21 (33)
T ss_dssp CCSCSCCSSHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHH
T ss_conf 986644532538999998755
No 71
>>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain, oxidoreductase; 2.00A {Pseudomonas aeruginosa} (A:1-182)
Probab=33.83 E-value=35 Score=15.62 Aligned_cols=26 Identities=15% Similarity=0.004 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 99999999999779979998389863
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFDRGKHL 101 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FDR~g~~ 101 (120)
.+|..+|.+++..|.+-++|||....
T Consensus 26 ~iG~~iA~~l~~~G~~v~~~d~~~~~ 51 (182)
T 1np3_A 26 SQGHAHACNLKDSGVDVTVGLRSGSA 51 (182)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTCH
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCH
T ss_conf 17789886668649977999799970
No 72
>>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* (B:1-60,B:173-240,B:335-405)
Probab=32.88 E-value=37 Score=15.53 Aligned_cols=45 Identities=16% Similarity=-0.026 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHC--CCCEEEECCCCCCC--HHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999977--99799983898631--225999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKV--GVKSVYFDRGKHLY--CGRIAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~--gI~~v~FDR~g~~y--HGrvka~ad~~R~~Gl~F 120 (120)
-.|-..|..+.+. +.+-+++|++.+.. .--..++++.+++.|++|
T Consensus 31 ~~g~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~~~~~GV~i 79 (199)
T 2gag_B 31 GHGLATAYFLAKNHGITNVAVLEKGWLAGGHDHVAWAFARKANEMGVDI 79 (199)
T ss_dssp HHHHHHHHHHHHHHCCCCEEEECSSSTTCSHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 9999999999966987869998389988659999999999998679899
No 73
>>3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} (A:164-296)
Probab=32.76 E-value=37 Score=15.51 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHCCCCEEEECCC---CCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999779979998389---8631225999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFDRG---KHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FDR~---g~~yHGrvka~ad~~R~~Gl~F 120 (120)
..|..+++.+.++|..+|.|=-+ -.-..=|...|-+++++.|+.+
T Consensus 4 ~~~~~a~~~l~~~G~~~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~ 51 (133)
T 3dbi_A 4 QTSFNAVAELINAGHQEIAFLTGSXDSPTSIERLAGYKDALAQHGIAL 51 (133)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999999998499859999789998669999999999999839998
No 74
>>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, structural genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli K12} (A:122-254)
Probab=32.76 E-value=37 Score=15.51 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHCCCCEEEECCC---CCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999779979998389---8631225999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFDRG---KHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FDR~---g~~yHGrvka~ad~~R~~Gl~F 120 (120)
..|..+++.+.++|..+|.|=-+ -.-..=|...|-+++++.|+.+
T Consensus 4 ~~~~~a~~~l~~~G~~~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~ 51 (133)
T 3brq_A 4 QTSFNAVAELINAGHQEIAFLTGSXDSPTSIERLAGYKDALAQHGIAL 51 (133)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 211134455434036559999577556530335459999998639877
No 75
>>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens AM1} (A:117-248)
Probab=32.69 E-value=37 Score=15.51 Aligned_cols=39 Identities=26% Similarity=0.221 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 9999999999999779979998389863122599999999965
Q gi|254780245|r 74 ATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKG 116 (120)
Q Consensus 74 A~~vG~~ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~ 116 (120)
+.-+|..+|+.+.+.|.+-+..||+.. +...+++.+.+.
T Consensus 12 s~GIG~a~a~~la~~G~~Vv~~~r~~~----~l~~~~~~~~~~ 50 (132)
T 1lu9_A 12 TGPVGMRSAALLAGEGAEVVLCGRKLD----KAQAAADSVNKR 50 (132)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHCC
T ss_conf 889999999999977998999838889----999999997523
No 76
>>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics, protein structure initiative; 2.35A {Agrobacterium tumefaciens str} (A:111-242)
Probab=32.50 E-value=37 Score=15.49 Aligned_cols=44 Identities=18% Similarity=0.104 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHCCCCEEEECCC---CCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999779979998389---863122599999999965878
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFDRG---KHLYCGRIAALADAVRKGGVS 119 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FDR~---g~~yHGrvka~ad~~R~~Gl~ 119 (120)
..|..+++.+.++|-.+|.|=-+ ..-..-|...|.+++.+.|+.
T Consensus 3 ~~~~~~~~~l~~~G~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~ 49 (132)
T 3gv0_A 3 AYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLT 49 (132)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 56777777763125340368717743322566678889999986311
No 77
>>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus} (A:1-80)
Probab=32.31 E-value=38 Score=15.47 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 9999999999977997999838986
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFDRGKH 100 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FDR~g~ 100 (120)
.+|..+|+++...|++-++|||...
T Consensus 11 ~iG~~va~~~~~fG~~v~~~d~~~~ 35 (80)
T 2z04_A 11 QLGWXTILEGRKLGFKFHVLEDKEN 35 (80)
T ss_dssp HHHHHHHHHHGGGTCEEEEECSSSS
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 9999999999977998999956997
No 78
>>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structural genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum 255-15} (A:1-113)
Probab=31.93 E-value=17 Score=17.57 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=10.1
Q ss_pred CEEEECCCCCCC
Q ss_conf 799983898631
Q gi|254780245|r 91 KSVYFDRGKHLY 102 (120)
Q Consensus 91 ~~v~FDR~g~~y 102 (120)
-+|+|||+.|..
T Consensus 94 GkvlFDRNeYi~ 105 (113)
T 3c18_A 94 GTIIFERNDYLT 105 (113)
T ss_dssp SEEEEESTTHHH
T ss_pred CEEEEECCHHHH
T ss_conf 348884657799
No 79
>>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,, transport protein; HET: BGC; 0.92A {Escherichia coli} (A:113-257)
Probab=31.71 E-value=19 Score=17.29 Aligned_cols=46 Identities=11% Similarity=-0.062 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEEC---CCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999997799799983---898631225999999999658789
Q gi|254780245|r 75 TAVGNLLVERAVKVGVKSVYFD---RGKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 75 ~~vG~~ia~r~~~~gI~~v~FD---R~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
...|.++++.+.++|..+|+|= .+.+--.-|...|-+++.+.|+.+
T Consensus 13 ~~~~~~a~~~l~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~ 61 (145)
T 2fvy_A 13 KHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKT 61 (145)
T ss_dssp HHHHHCGGGCTTCSSSEEEEEEECSTTCHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 9875201431114798269999478666505777777999998629863
No 80
>>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiamine diphosphate; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* (A:1-191)
Probab=31.21 E-value=39 Score=15.36 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999997799799983898631225999999999658789
Q gi|254780245|r 77 VGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 77 vG~~ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
+++.|++.+++.||+.|..==|. ..-.|.|++++.|++|
T Consensus 10 g~~ai~~~L~~~Gv~~vfg~pG~-----~~~~l~~~l~~~~~~~ 48 (191)
T 2q28_A 10 GMHIIVEALKQNNIDTIYGVVGI-----PVTDMARHAQAEGIRY 48 (191)
T ss_dssp HHHHHHHHHHHTTCCEEEECCCT-----TTHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHCCCCEEEECCCH-----HHHHHHHHHHHCCCCE
T ss_conf 99999999998799899982787-----3899999887769909
No 81
>>3a3d_A PBP4, penicillin-binding protein 4; DACB, hydrolase; 1.60A {Haemophilus influenzae} PDB: 3a3e_A* 3a3f_A* 3a3i_A* (A:60-136,A:229-272)
Probab=30.69 E-value=40 Score=15.31 Aligned_cols=41 Identities=24% Similarity=0.301 Sum_probs=29.5
Q ss_pred HHHHHHHHCCCCE----EEECCCCCCCH--------------HHHHHHHHHHHHCCCCC
Q ss_conf 9999999779979----99838986312--------------25999999999658789
Q gi|254780245|r 80 LLVERAVKVGVKS----VYFDRGKHLYC--------------GRIAALADAVRKGGVSF 120 (120)
Q Consensus 80 ~ia~r~~~~gI~~----v~FDR~g~~yH--------------Grvka~ad~~R~~Gl~F 120 (120)
.|++.++++||++ |+.|.+-|--. ---.+|++.+++.|+.|
T Consensus 40 ~la~~Lk~~GI~~I~G~iiiD~S~f~~~~~~pgw~~~D~pa~~aa~~f~~~l~~~Gv~~ 98 (121)
T 3a3d_A 40 SLLAELKKQGIKKINGDLVLDTSVFSSHDRGLGWIWNDNTDAYAAAIIQRQLRKLGIEF 98 (121)
T ss_dssp HHHHHHHHTTCCEECSCEEEECTTBCSCSSCTTCBGGGCHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHCCCEECCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999996187524043230233256654577764356736679999999998638733
No 82
>>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42} (A:1-124)
Probab=30.04 E-value=41 Score=15.24 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 678999999999999997799799983898631225999999999658789
Q gi|254780245|r 70 NIVAATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 70 ni~aA~~vG~~ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
+-..+++-...|-+.+++.|.+.|. .||=|=.-=..||+.+.++||.|
T Consensus 74 ~~~~sYl~~~~Ii~~A~~~g~~Aih---PGyGflSEn~~fa~~~~~aGi~F 121 (124)
T 2qf7_A 74 GPIESYLSIDEVIRVAKLSGADAIH---PGYGLLSESPEFVDACNKAGIIF 121 (124)
T ss_dssp CTTHHHHCHHHHHHHHHHHTCSEEE---CCSSTTTTCHHHHHHHHHTTCEE
T ss_pred CCCCCCCCHHHHHHHHHHHCCCEEE---CCCCHHHCCHHHHHHHHHCCCEE
T ss_conf 6300004999999999997909998---88443004999999999888989
No 83
>>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis} (A:105-237)
Probab=28.86 E-value=33 Score=15.81 Aligned_cols=44 Identities=20% Similarity=0.072 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHH--CCCCEEEECCC---CCCCHHHHHHHHHHHHHCCCC
Q ss_conf 999999999997--79979998389---863122599999999965878
Q gi|254780245|r 76 AVGNLLVERAVK--VGVKSVYFDRG---KHLYCGRIAALADAVRKGGVS 119 (120)
Q Consensus 76 ~vG~~ia~r~~~--~gI~~v~FDR~---g~~yHGrvka~ad~~R~~Gl~ 119 (120)
..|.+.++.+.+ +|-.+|.|-.+ ..-..-|...|.+++++.|+.
T Consensus 3 ~~g~~a~~~L~~~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~ 51 (133)
T 2ioy_A 3 KGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFDEAIAKYPDI 51 (133)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHTTCTTE
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999986699987999979999869999999999999878998
No 84
>>2zko_A NS1, NS1A, non-structural protein 1; dsRNA, protein-RNA interaction; 1.70A {Influenza a virus} PDB: 2z0a_A 1ns1_A 1ail_A (A:)
Probab=28.73 E-value=43 Score=15.10 Aligned_cols=20 Identities=45% Similarity=0.654 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q ss_conf 86678999999999999997
Q gi|254780245|r 68 GANIVAATAVGNLLVERAVK 87 (120)
Q Consensus 68 ~~ni~aA~~vG~~ia~r~~~ 87 (120)
+-+|+.|...|+.|.|++++
T Consensus 54 Gldie~At~~GkqiverIL~ 73 (73)
T 2zko_A 54 GLDIETATRAGKQIVERILK 73 (73)
T ss_dssp TCCHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHC
T ss_conf 41417988878999999859
No 85
>>2w70_A Biotin carboxylase; ligase, inhibitor, ATP-binding, fatty acid biosynthesis, nucleotide-binding, lipid synthesis, ATP-grAsp domain; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 1dv2_A* 2gps_A 2gpw_A 3g8c_A* ... (A:1-105)
Probab=28.33 E-value=44 Score=15.06 Aligned_cols=46 Identities=17% Similarity=0.170 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 8999999999999997799799983898631225999999999658789
Q gi|254780245|r 72 VAATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 72 ~aA~~vG~~ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
..+++-...|-+-+++.|.+.|. .||=|----..||+.+.++||.|
T Consensus 57 ~~sYl~~~~Ii~~A~~~g~~Aih---PGyGFlSEn~~Fa~~~~~aGi~F 102 (105)
T 2w70_A 57 VKSYLNIPAIISAAEITGAVAIH---PGYGFLSENANFAEQVERSGFIF 102 (105)
T ss_dssp GGTTTCHHHHHHHHHHHTCCEEE---CCSSTTTTCHHHHHHHHHTTCEE
T ss_pred HHHHCCHHHHHHHHHHCCCCEEE---CCHHHHHHCHHHHHHHHHCCCCE
T ss_conf 53004899999999882999996---17407554666557899759716
No 86
>>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase, ligase; 2.20A {Aquifex aeolicus VF5} (A:1-104)
Probab=28.26 E-value=44 Score=15.05 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 78999999999999997799799983898631225999999999658789
Q gi|254780245|r 71 IVAATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 71 i~aA~~vG~~ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
-..+++-...|-+.+++.|++.|. .||=|=.-=..||+.+.++||.|
T Consensus 55 ~~~sYl~~~~Ii~~A~~~~~dAih---PGyGFlSEn~~Fa~~~~~~gi~F 101 (104)
T 1ulz_A 55 PLDTYLNKQRIINLALEVGADAIH---PGYGFLAENAEFAKMCEEAGITF 101 (104)
T ss_dssp TTHHHHCHHHHHHHHHHTTCCEEE---CCSSTTTTCHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEE---CCHHHHHHCHHHHCCHHHCCEEE
T ss_conf 689888288899999981999992---68877653634310313314455
No 87
>>2iye_A Copper-transporting ATPase; hydrolase, P-type ATPase, CPX-ATPase, COPB, heavy metal translocation; 2.6A {Sulfolobus solfataricus} (A:1-39,A:139-263)
Probab=28.08 E-value=44 Score=15.08 Aligned_cols=28 Identities=14% Similarity=0.446 Sum_probs=13.3
Q ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 997999838986312259999999996587
Q gi|254780245|r 89 GVKSVYFDRGKHLYCGRIAALADAVRKGGV 118 (120)
Q Consensus 89 gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl 118 (120)
.|..|+||..|-. .-++...+.+|+.|+
T Consensus 27 ~~~~~~~~~~~~~--P~a~e~I~~L~~~Gi 54 (164)
T 2iye_A 27 EIDTIIFDKTGTL--PNLKDYLEKLKNEGL 54 (164)
T ss_dssp TCCEEEEESTTTT--SCCHHHHHHHHGGGC
T ss_pred CCCEEEECCCCCC--CHHHHHHHHHHHCCC
T ss_conf 9999999188523--129999999997599
No 88
>>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp} (A:106-241)
Probab=28.04 E-value=45 Score=15.03 Aligned_cols=45 Identities=13% Similarity=0.105 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHCCCCEEEECC---CCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999977997999838---98631225999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFDR---GKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FDR---~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
..|.++++.+.++|-..|.|=- ...--.-|+..|.+++.+.|+.+
T Consensus 3 ~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~r~~g~~~a~~~~~~~~ 50 (136)
T 2qu7_A 3 EAAYIATKRVLESTCKEVGLLLANPNISTTIGRKNGYNKAISEFDLNV 50 (136)
T ss_dssp HHHHHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 777777777765225612589405310366776788887899839986
No 89
>>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} (A:96-167,A:251-359,A:508-571)
Probab=27.70 E-value=45 Score=14.99 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCC----CCCCH-----HHHHHHHHHHHHCCCCC
Q ss_conf 9999999999999779979998389----86312-----25999999999658789
Q gi|254780245|r 74 ATAVGNLLVERAVKVGVKSVYFDRG----KHLYC-----GRIAALADAVRKGGVSF 120 (120)
Q Consensus 74 A~~vG~~ia~r~~~~gI~~v~FDR~----g~~yH-----Grvka~ad~~R~~Gl~F 120 (120)
|--.|-.-|-.+...|++-++||++ |...+ .-+..+.+.+++.|++|
T Consensus 39 aGpaGl~aA~~~~~~g~~v~v~e~~~~~GG~~~~~~~~~~l~~~l~~~~~~~gV~i 94 (245)
T 1y0p_A 39 SGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAGVGAHVVQVLYDNAVKRNIDL 94 (245)
T ss_dssp CSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCHHHHHHHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCHHHHHHHHHHHHCCEEE
T ss_conf 87999999999998899489996899999659985444168888888876414168
No 90
>>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} (A:)
Probab=27.14 E-value=46 Score=14.93 Aligned_cols=42 Identities=19% Similarity=0.179 Sum_probs=35.8
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 999999997799799983898631225999999999658789
Q gi|254780245|r 79 NLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 79 ~~ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
+...+.|...|++.+++.-+-..+.-.+..+++-+.+.|+++
T Consensus 87 ~~~i~~a~~lg~~~i~~~~~~~~~~~~l~~l~~~a~~~Gv~l 128 (264)
T 1yx1_A 87 EPTLRRAEACGAGWLKVSLGLLPEQPDLAALGRRLARHGLQL 128 (264)
T ss_dssp HHHHHHHHHTTCSEEEEEEECCCSSCCHHHHHHHHTTSSCEE
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCEE
T ss_conf 999999997498989986697410132899999998539889
No 91
>>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; HET: MSE; 2.88A {Vibrio parahaemolyticus} (A:103-223)
Probab=27.03 E-value=46 Score=14.92 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHCCCCEEEECC---CCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999977997999838---98631225999999999658789
Q gi|254780245|r 75 TAVGNLLVERAVKVGVKSVYFDR---GKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 75 ~~vG~~ia~r~~~~gI~~v~FDR---~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
...|...++.+.++|-.+|.|=- ...-...|+..|.+++++.|+.+
T Consensus 3 ~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~ 51 (121)
T 3d8u_A 3 FEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSAXIENYLTP 51 (121)
T ss_dssp HHHHHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHCCCCC
T ss_conf 6999999998875146236411357653012210001355554227766
No 92
>>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} (A:168-216,A:283-418)
Probab=26.22 E-value=24 Score=16.64 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=18.3
Q ss_pred EEECCCEEEEEEECCCCEEEEE
Q ss_conf 9638709999996279759999
Q gi|254780245|r 32 CRSSKHIYGQIIDDSIGHTLVS 53 (120)
Q Consensus 32 ~rSnkhiyAQiIdd~~~~tl~s 53 (120)
|..-|||-+|++-|..|.+++-
T Consensus 48 ~~~~rhiEvqvl~D~~Gnvv~l 69 (185)
T 1w96_A 48 YQRARHLEVQLLADQYGTNISL 69 (185)
T ss_dssp HGSCEEEEEEEEECTTSCEEEE
T ss_pred CCCCHHHEEEEEEECCCCEEEE
T ss_conf 0121201013465237843354
No 93
>>1hwx_A GDH, glutamate dehydrogenase; allostery, abortive complex, oxidoreductase; HET: GLU GTP NAI; 2.50A {Bos taurus} (A:242-372)
Probab=26.21 E-value=48 Score=14.83 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHCCCCEE-EECCCCCCCHHH
Q ss_conf 999999999997799799-983898631225
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSV-YFDRGKHLYCGR 105 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v-~FDR~g~~yHGr 105 (120)
.||.-+|+.+.+.|++-| +-|+.|..|...
T Consensus 13 ~VG~~~a~~L~~~G~kvv~v~d~~G~i~~~~ 43 (131)
T 1hwx_A 13 NVGLHSMRYLHRFGAKCVAVGESDGSIWNPD 43 (131)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEETTEEECCTT
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCEECCC
T ss_conf 1558999777735747999974788354475
No 94
>>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides} (A:107-247)
Probab=25.81 E-value=49 Score=14.79 Aligned_cols=44 Identities=14% Similarity=-0.015 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHC--CCCEEEEC---CCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 9999999999977--99799983---89863122599999999965878
Q gi|254780245|r 76 AVGNLLVERAVKV--GVKSVYFD---RGKHLYCGRIAALADAVRKGGVS 119 (120)
Q Consensus 76 ~vG~~ia~r~~~~--gI~~v~FD---R~g~~yHGrvka~ad~~R~~Gl~ 119 (120)
..|.+.++.+.++ |..+|.|= ....-..-|...|.|++++.|+.
T Consensus 3 ~~g~~a~~~l~~~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~~~~ 51 (141)
T 3l49_A 3 SIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDV 51 (141)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTE
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999997499977999926755522569999999999878998
No 95
>>3l6u_A ABC-type sugar transport system periplasmic component; structural genomics, nysgrc, target 11006S, PSI-2, protein structure initiative; 1.90A {Exiguobacterium sibiricum} (A:112-249)
Probab=25.38 E-value=50 Score=14.74 Aligned_cols=45 Identities=7% Similarity=-0.050 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHCCCC--EEEEC--CCCC-CCHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999977997--99983--8986-3122599999999965878
Q gi|254780245|r 75 TAVGNLLVERAVKVGVK--SVYFD--RGKH-LYCGRIAALADAVRKGGVS 119 (120)
Q Consensus 75 ~~vG~~ia~r~~~~gI~--~v~FD--R~g~-~yHGrvka~ad~~R~~Gl~ 119 (120)
...|.++++.+.++|-. +|+|= ..++ --.-|...|.+++++.|..
T Consensus 7 ~~~g~~~~~~L~~~g~~~~~i~~i~g~~~~~~~~~R~~g~~~~l~~~~~~ 56 (138)
T 3l6u_A 7 QLASYIKNELIKQTGRSTGRIVEITGTANVYTTNERHRGFLKGIENEPTL 56 (138)
T ss_dssp HHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHHHHHHHHHHHHHTTCTTE
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999877789972888750899848998768999998534445543885
No 96
>>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} (A:157-289)
Probab=24.92 E-value=51 Score=14.69 Aligned_cols=44 Identities=9% Similarity=-0.158 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHC--CCCEEEEC--CCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 9999999999977--99799983--89863122599999999965878
Q gi|254780245|r 76 AVGNLLVERAVKV--GVKSVYFD--RGKHLYCGRIAALADAVRKGGVS 119 (120)
Q Consensus 76 ~vG~~ia~r~~~~--gI~~v~FD--R~g~~yHGrvka~ad~~R~~Gl~ 119 (120)
..|+++++.+.++ |-.+|.|= ..++.-.-|+..|-|++.+.|..
T Consensus 3 ~~g~~a~~~L~~~~~g~~~i~~i~g~~~~~~~~R~~Gf~~~~~~~~~~ 50 (133)
T 1jx6_A 3 EGSRELATEFGKFFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNNF 50 (133)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEECCSTTHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999998469974799815999856999999999999863278
No 97
>>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: SKM; 1.65A {Thermus thermophilus HB8} PDB: 1wxd_A* 2cy0_A* 2ev9_A* (A:115-228)
Probab=24.91 E-value=51 Score=14.69 Aligned_cols=37 Identities=19% Similarity=0.243 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999999977997999838986312259999999996
Q gi|254780245|r 75 TAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRK 115 (120)
Q Consensus 75 ~~vG~~ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~ 115 (120)
-.+|..++..+.+.|.+-.+|||... +...+++...+
T Consensus 11 G~~g~~ia~~L~~~g~~v~v~nR~~~----~a~~l~~~~~~ 47 (114)
T 2d5c_A 11 GGAGRAVAFALREAGLEVWVWNRTPQ----RALALAEEFGL 47 (114)
T ss_dssp SHHHHHHHHHHHHTTCCEEEECSSHH----HHHHHHHHHTC
T ss_pred CHHHHHHHHHHHCCCCCHHHHHCCHH----HHHHHHCCCCC
T ss_conf 40333210001101220113322077----77765302100
No 98
>>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; HET: MSE; 1.90A {Pseudomonas putida} (A:1-168)
Probab=24.71 E-value=51 Score=14.66 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 9999999999997799799983898631
Q gi|254780245|r 75 TAVGNLLVERAVKVGVKSVYFDRGKHLY 102 (120)
Q Consensus 75 ~~vG~~ia~r~~~~gI~~v~FDR~g~~y 102 (120)
-.+|.-+|+++...|..-++|||...+.
T Consensus 18 G~iG~~iA~~L~~~G~~V~~~dr~~~~~ 45 (168)
T 3l6d_A 18 GAXGTIXAQVLLKQGKRVAIWNRSPGKA 45 (168)
T ss_dssp SHHHHHHHHHHHHTTCCEEEECSSHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 9999999999997899699980999999
No 99
>>3brs_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans isdg} (A:113-245)
Probab=24.50 E-value=52 Score=14.64 Aligned_cols=44 Identities=7% Similarity=-0.108 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHC--CCCEEEECCCCC---CCHHHHHHHHHHHHHCCCC
Q ss_conf 9999999999977--997999838986---3122599999999965878
Q gi|254780245|r 76 AVGNLLVERAVKV--GVKSVYFDRGKH---LYCGRIAALADAVRKGGVS 119 (120)
Q Consensus 76 ~vG~~ia~r~~~~--gI~~v~FDR~g~---~yHGrvka~ad~~R~~Gl~ 119 (120)
..|..+++.+.++ |-.+|+|-.+.. ---.|...|.+++++.|+.
T Consensus 3 ~~g~~a~~~l~~~~~g~~~i~~i~g~~~~~~~~~R~~Gf~~~~~~~~~~ 51 (133)
T 3brs_A 3 QAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDREEGLKIGLSDDSNK 51 (133)
T ss_dssp HHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 7889988887531344321588425531077888876499999863333
No 100
>>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum} (A:158-285)
Probab=24.41 E-value=52 Score=14.63 Aligned_cols=45 Identities=16% Similarity=-0.006 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCC---CHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999779979998389863---1225999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFDRGKHL---YCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FDR~g~~---yHGrvka~ad~~R~~Gl~F 120 (120)
.-|..+++.+.++|...+.|=-+... -.-|+..|-+++++.|+.+
T Consensus 3 ~a~~~a~~~L~~~G~~~ia~i~~~~~~~~~~~R~~g~~~~~~~~~i~~ 50 (128)
T 3jvd_A 3 AGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGISHAASIYGAEV 50 (128)
T ss_dssp HHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 765542001234553168750465321124554466777898608642
No 101
>>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, PSI, protein structure initiative; 2.40A {Salmonella typhimurium LT2} (A:)
Probab=24.14 E-value=53 Score=14.60 Aligned_cols=27 Identities=11% Similarity=0.004 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 999999999997799799983898631
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFDRGKHLY 102 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FDR~g~~y 102 (120)
.+|.-+|..+.++|.+-++|||+.-++
T Consensus 13 ~MG~~ma~~L~~~G~~V~v~dr~~~k~ 39 (295)
T 1yb4_A 13 IXGSPXAINLARAGHQLHVTTIGPVAD 39 (295)
T ss_dssp TTHHHHHHHHHHTTCEEEECCSSCCCH
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 889999999997799289980889899
No 102
>>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, signaling protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A* (A:170-304,A:441-482)
Probab=23.73 E-value=54 Score=14.55 Aligned_cols=43 Identities=12% Similarity=-0.018 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHCCCCEE-EECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999999997799799-98389863122599999999965878
Q gi|254780245|r 77 VGNLLVERAVKVGVKSV-YFDRGKHLYCGRIAALADAVRKGGVS 119 (120)
Q Consensus 77 vG~~ia~r~~~~gI~~v-~FDR~g~~yHGrvka~ad~~R~~Gl~ 119 (120)
.++.|++.+++.|.++| ++-....-..+-+.+|.+++.+.|++
T Consensus 4 qa~aia~ll~~~gwk~VaII~~dd~yG~~~~~~l~~~~~~~Gi~ 47 (177)
T 2e4u_A 4 QAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNIC 47 (177)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEESSTTHHHHHHHHHHHHHTTTCE
T ss_pred CHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCE
T ss_conf 02579999998299589999844066779999999988864834
No 103
>>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydrolase, cytoplasm, NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei 1710B} PDB: 3glq_A* (A:247-409)
Probab=23.63 E-value=54 Score=14.54 Aligned_cols=24 Identities=13% Similarity=0.050 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 999999999997799799983898
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFDRGK 99 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FDR~g 99 (120)
.+|..+|++++..|.+-+++||..
T Consensus 41 ~IG~~iA~~l~~fg~~V~~~~~~~ 64 (163)
T 3d64_A 41 DVGKGCAQSLRGLGATVWVTEIDP 64 (163)
T ss_dssp HHHHHHHHHHHTTTCEEEEECSCH
T ss_pred HHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 899999999986889899992895
No 104
>>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} (A:1-186)
Probab=23.57 E-value=54 Score=14.53 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999997799799983898631225999999999658789
Q gi|254780245|r 77 VGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 77 vG~~ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
+++.|++.+.+.||+.|.==-|+ -+-.|.|++++.||.|
T Consensus 13 ~~~~i~~~L~~~Gv~~vFg~~G~-----~~~~l~~a~~~~~i~~ 51 (186)
T 1ozh_A 13 GADLVVSQLEAQGVRQVFGIPGA-----KIDKVFDSLLDSSIRI 51 (186)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCT-----TTHHHHHHGGGSSSEE
T ss_pred HHHHHHHHHHHCCCCEEEEECCC-----CHHHHHHHHHHCCCEE
T ss_conf 99999999998799899997885-----5699999998669919
No 105
>>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus} (A:107-232)
Probab=23.52 E-value=54 Score=14.53 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=31.5
Q ss_pred HHHHHHHHHHCCCCEEEE---CCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 999999999779979998---389863122599999999965878
Q gi|254780245|r 78 GNLLVERAVKVGVKSVYF---DRGKHLYCGRIAALADAVRKGGVS 119 (120)
Q Consensus 78 G~~ia~r~~~~gI~~v~F---DR~g~~yHGrvka~ad~~R~~Gl~ 119 (120)
|-.+|....++|-.+|.| +...+-+.-|+..|.+++.+.|+.
T Consensus 4 ~~~~a~~ll~~G~r~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~ 48 (126)
T 3hs3_A 4 GGKESIKLLSKKIEKVLIQHWPLSLPTIRERIEAMTAEASKLKID 48 (126)
T ss_dssp HHHHHHHTSCTTCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 998887776448726999826621004677767899886434753
No 106
>>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum} (A:175-320)
Probab=23.20 E-value=55 Score=14.49 Aligned_cols=43 Identities=7% Similarity=0.071 Sum_probs=28.0
Q ss_pred HHHHHHHHHHCCCCEEEEC--------------------CCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999997799799983--------------------898631225999999999658789
Q gi|254780245|r 78 GNLLVERAVKVGVKSVYFD--------------------RGKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 78 G~~ia~r~~~~gI~~v~FD--------------------R~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
|.++++.+.++|-.+|.|= .+-..-.=|...|.+++.++|+.+
T Consensus 3 ~~~a~~~Li~~G~r~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~G~~~al~~~g~~~ 65 (146)
T 3h5t_A 3 IAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDP 65 (146)
T ss_dssp THHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHHHHHTCCCTTHHHHHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 788888999739975999970455566643035665411024455666678999988613565
No 107
>>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} (A:160-271)
Probab=23.01 E-value=55 Score=14.47 Aligned_cols=49 Identities=20% Similarity=0.401 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH----HHHHHHHHHHHCCCCC
Q ss_conf 899999999999999779979998389863122----5999999999658789
Q gi|254780245|r 72 VAATAVGNLLVERAVKVGVKSVYFDRGKHLYCG----RIAALADAVRKGGVSF 120 (120)
Q Consensus 72 ~aA~~vG~~ia~r~~~~gI~~v~FDR~g~~yHG----rvka~ad~~R~~Gl~F 120 (120)
-.+-.+|-.+|..+...|.+-..|+|+.....+ -...+.+.+++.|++|
T Consensus 23 vGgG~~g~E~A~~l~~~g~~Vtli~~~~~~~~~~d~~~~~~~~~~l~~~gV~~ 75 (112)
T 1onf_A 23 VGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINI 75 (112)
T ss_dssp ECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEE
T ss_pred ECCCHHHHHHHHHHHHHCCEEEEEEECCHHCCCCCHHHHHHHHHHHHHCCEEE
T ss_conf 99768999999998862977999986450010226899999999998658499
No 108
>>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi} (A:171-304)
Probab=22.75 E-value=56 Score=14.44 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEC--C-CC-CCCHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999997799799983--8-98-631225999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFD--R-GK-HLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FD--R-~g-~~yHGrvka~ad~~R~~Gl~F 120 (120)
..|..+++.+.++|-..|.|= . .. ....-|...|-+++++.|+.+
T Consensus 3 ~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~r~~g~~~a~~~~~~~~ 51 (134)
T 3e3m_A 3 RAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGFKRAMREAGLNP 51 (134)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 8999999999984997499981787555407999860589998620265
No 109
>>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepressor, transcription repressor; HET: NAD; 1.95A {Homo sapiens} (A:117-311)
Probab=22.69 E-value=56 Score=14.43 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 999999999999779979998389863
Q gi|254780245|r 75 TAVGNLLVERAVKVGVKSVYFDRGKHL 101 (120)
Q Consensus 75 ~~vG~~ia~r~~~~gI~~v~FDR~g~~ 101 (120)
-.+|..+|++++..|.+-++|||.+..
T Consensus 61 G~IG~~vA~~l~~fg~~V~~~~~~~~~ 87 (195)
T 1mx3_A 61 GRVGQAVALRAKAFGFNVLFYDPYLSD 87 (195)
T ss_dssp SHHHHHHHHHHHTTTCEEEEECTTSCT
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 806899999998769989974476660
No 110
>>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural genomics; HET: NDP; 1.80A {Thermus thermophilus HB8} (A:1-157)
Probab=22.64 E-value=55 Score=14.48 Aligned_cols=24 Identities=8% Similarity=-0.082 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 999999999977997999838986
Q gi|254780245|r 77 VGNLLVERAVKVGVKSVYFDRGKH 100 (120)
Q Consensus 77 vG~~ia~r~~~~gI~~v~FDR~g~ 100 (120)
+|..+|+++.+.|.+-+.|||+..
T Consensus 12 mG~~lA~~L~~~G~~V~~~d~~~~ 35 (157)
T 2cvz_A 12 XGYPXAGHLARRFPTLVWNRTFEK 35 (157)
T ss_dssp THHHHHHHHHTTSCEEEECSSTHH
T ss_pred HHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 799999999948987999899999
No 111
>>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} (A:)
Probab=22.56 E-value=57 Score=14.41 Aligned_cols=43 Identities=23% Similarity=0.309 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999779979998389863122599999999965878
Q gi|254780245|r 73 AATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVS 119 (120)
Q Consensus 73 aA~~vG~~ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~ 119 (120)
++.-+|..+|.+..+.|..-+..+|... +++.+++.+++.|-+
T Consensus 10 as~GIG~aia~~la~~G~~V~l~~r~~~----~l~~~~~~~~~~~~~ 52 (256)
T 1geg_A 10 AGQGIGKAIALRLVKDGFAVAIADYNDA----TAKAVASEINQAGGH 52 (256)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHHCCCC
T ss_conf 8509999999999987998999989899----999999999852897
No 112
>>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} (A:)
Probab=22.31 E-value=57 Score=14.38 Aligned_cols=39 Identities=3% Similarity=-0.142 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 9999999999977997999838986312259999999996587
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGV 118 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl 118 (120)
.+|..+++.+.+.|++-++.|+..- ++..+.+.+++.|+
T Consensus 13 ~~G~~ia~~L~~~g~~v~vid~d~~----~~~~~~~~~~~~~~ 51 (153)
T 1id1_A 13 ILAINTILQLNQRGQNVTVISNLPE----DDIKQLEQRLGDNA 51 (153)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCCH----HHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCH----HHHHHHHHHHCCCC
T ss_conf 8999999999976998799988837----78999997413897
No 113
>>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} (A:184-247)
Probab=22.01 E-value=58 Score=14.35 Aligned_cols=47 Identities=19% Similarity=0.165 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCC----CHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999999779979998389863----1225999999999658789
Q gi|254780245|r 74 ATAVGNLLVERAVKVGVKSVYFDRGKHL----YCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 74 A~~vG~~ia~r~~~~gI~~v~FDR~g~~----yHGrvka~ad~~R~~Gl~F 120 (120)
+-.+|-.+|.-+.+.|.+-.+++++... ...-...+.+.+.+.|++|
T Consensus 10 ~G~iGlE~A~~l~~~g~~Vtiie~~~~il~~~d~~~~~~~~~~l~~~gv~~ 60 (64)
T 2hqm_A 10 AGYIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDHYVKEGINV 60 (64)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEE
T ss_pred CCHHHHHHHHHHHHCCCCEEEEEHHCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 887899999999964984255300124443330344334555444201001
No 114
>>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* (A:1-44,A:161-223,A:343-405)
Probab=21.99 E-value=58 Score=14.34 Aligned_cols=26 Identities=19% Similarity=0.137 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHCCCCEE-EECCCC
Q ss_conf 99999999999997799799-983898
Q gi|254780245|r 74 ATAVGNLLVERAVKVGVKSV-YFDRGK 99 (120)
Q Consensus 74 A~~vG~~ia~r~~~~gI~~v-~FDR~g 99 (120)
|-.-|...|..+.+.|+.+| +|||+.
T Consensus 14 ~g~~gl~~a~~la~~g~~~v~v~e~~~ 40 (170)
T 3dje_A 14 AGTWGTSTALHLARRGYTNVTVLDPYP 40 (170)
T ss_dssp CSHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred CCHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 319999999999967999789984999
No 115
>>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} (A:1-193)
Probab=21.78 E-value=59 Score=14.32 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999997799799983898631225999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
..++.|++.+++.||+.|.-==|. ..-.|.|++++.|+++
T Consensus 11 ~~~~~i~~~L~~~Gv~~vfg~pG~-----~~~~l~~~l~~~~i~~ 50 (193)
T 2c31_A 11 DGFHVLIDALKMNDIDTMYGVVGI-----PITNLARMWQDDGQRF 50 (193)
T ss_dssp EHHHHHHHHHHHTTCCEEEECCCT-----TTHHHHHHHHHTTCEE
T ss_pred CHHHHHHHHHHHCCCCEEEEECCC-----CHHHHHHHHHHCCCEE
T ss_conf 499999999998799899993693-----5799999998679969
No 116
>>2iks_A DNA-binding transcriptional dual regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.85A {Escherichia coli K12} (A:122-251)
Probab=21.58 E-value=59 Score=14.29 Aligned_cols=45 Identities=13% Similarity=0.058 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHCCCCEEEECCC---CCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999779979998389---8631225999999999658789
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFDRG---KHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FDR~---g~~yHGrvka~ad~~R~~Gl~F 120 (120)
.-|..+++.+.++|-.+|.|=-+ -....-|...|-+++.+.|+.+
T Consensus 3 ~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~r~~gf~~al~~~~~~~ 50 (130)
T 2iks_A 3 DDAEXLAEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPREV 50 (130)
T ss_dssp HHHHHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHHHHHHHTTCCCCE
T ss_pred CCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 232233101222023332223455554431001255555555223432
No 117
>>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B* (B:1-296)
Probab=21.17 E-value=19 Score=17.27 Aligned_cols=29 Identities=21% Similarity=0.171 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHCCC-CEEEECCCCCCCH
Q ss_conf 99999999999997799-7999838986312
Q gi|254780245|r 74 ATAVGNLLVERAVKVGV-KSVYFDRGKHLYC 103 (120)
Q Consensus 74 A~~vG~~ia~r~~~~gI-~~v~FDR~g~~yH 103 (120)
|-..+-.+| .++...| ..+.|||..|-|.
T Consensus 57 av~~ai~~a-~aLnc~i~~~~~FdRK~YfY~ 86 (296)
T 3h0l_B 57 AVEYAIRAS-LALNCEVHEESVFARKHYFYP 86 (296)
T ss_dssp HHHHHHHHH-HHTTCEECSEECEEEEECCCT
T ss_pred HHHHHHHHH-HHCCCCCCCCCEEEEEEECCC
T ss_conf 999999999-983987253536888862279
No 118
>>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} (A:1-167)
Probab=20.93 E-value=61 Score=14.21 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 999999999997799799983898631
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFDRGKHLY 102 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FDR~g~~y 102 (120)
.+|.-||..+.+.|.+-.+|||+.-++
T Consensus 15 ~mG~~lA~~L~~~G~~V~~~dr~~~~~ 41 (167)
T 1vpd_A 15 IXGKPXSKNLLKAGYSLVVSDRNPEAI 41 (167)
T ss_dssp TTHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 988999999997899699993999999
No 119
>>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* (A:1-169)
Probab=20.70 E-value=58 Score=14.34 Aligned_cols=46 Identities=24% Similarity=0.288 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 8999999999999997799799983898631225999999999658789
Q gi|254780245|r 72 VAATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 72 ~aA~~vG~~ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
..+++-...|-+.|++.|++.|. .||=|=--=..||+.+.++||.|
T Consensus 122 ~~sYln~~~Ii~~A~~~g~dAvh---PGYGfLSEn~~fa~~~~~aGi~F 167 (169)
T 3jrx_A 122 NNNYANVELIVDIAKRIPVQAVW---AGWGHASENPKLPELLCKNGVAF 167 (169)
T ss_dssp GGTTTCHHHHHHHHHHTTCSEEE---CCSSTTTTCTHHHHHHHTTTCEE
T ss_pred HHCCCCHHHHHHHHHHHCCCEEE---CCCCCCCCCHHHHHHHHHCCCEE
T ss_conf 42115999999999996929998---68786565999999999879979
No 120
>>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} (A:179-349)
Probab=20.56 E-value=56 Score=14.46 Aligned_cols=39 Identities=15% Similarity=0.171 Sum_probs=28.2
Q ss_pred HHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 999999977997999838986312259999999996587
Q gi|254780245|r 80 LLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGV 118 (120)
Q Consensus 80 ~ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl 118 (120)
.|++.+.+.|.-.+..+-.+..|+....+..+.||.++.
T Consensus 121 di~~~Li~~GlA~~~~~~~~~~~~~~~~~ae~~Ak~~k~ 159 (171)
T 3bdl_A 121 NLSVLLVEHALSKVHFTAERSSYYKSLLSAEEAAKQKKE 159 (171)
T ss_dssp EHHHHHHHTTSSEECGGGTTSTTHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHCCCEEEEECHHCCCHHHHHHHHHHHHHHHHC
T ss_conf 468999855664888604217269999999999988535
No 121
>>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosynthesis, structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} (A:98-282)
Probab=20.55 E-value=62 Score=14.16 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCH
Q ss_conf 9999999999977997999838986312
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFDRGKHLYC 103 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FDR~g~~yH 103 (120)
.+|..+|++++..|.+-++|||.+...-
T Consensus 55 ~IG~~va~~~~~fg~~V~~~~~~~~~~~ 82 (185)
T 1ygy_A 55 RIGQLVAQRIAAFGAYVVAYDPYVSPAR 82 (185)
T ss_dssp HHHHHHHHHHHTTTCEEEEECTTSCHHH
T ss_pred CCCHHHHHHCCCCCCCEEECCCCCCCCC
T ss_conf 7511211102365310010365322221
No 122
>>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 1.90A {Neisseria meningitidis MC58} (A:1-153)
Probab=20.31 E-value=63 Score=14.13 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHCCCCEE-EECCCCC
Q ss_conf 999999999997799799-9838986
Q gi|254780245|r 76 AVGNLLVERAVKVGVKSV-YFDRGKH 100 (120)
Q Consensus 76 ~vG~~ia~r~~~~gI~~v-~FDR~g~ 100 (120)
.+|.-||..+.++|.+.| +|||+..
T Consensus 10 ~mG~ala~~l~~~g~~~v~~~~~~~~ 35 (153)
T 1yqg_A 10 NXAAAVAGGLVKQGGYRIYIANRGAE 35 (153)
T ss_dssp HHHHHHHHHHHHHCSCEEEEECSSHH
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCHH
T ss_conf 99999999999689985899769999
No 123
>>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, protein structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} (A:)
Probab=20.12 E-value=64 Score=14.11 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 99999999999977997999838986
Q gi|254780245|r 75 TAVGNLLVERAVKVGVKSVYFDRGKH 100 (120)
Q Consensus 75 ~~vG~~ia~r~~~~gI~~v~FDR~g~ 100 (120)
-.+|..+++.+++.|++-++.|+...
T Consensus 16 g~~g~~ia~~L~~~g~~v~vid~~~~ 41 (140)
T 3fwz_A 16 GRVGSLLGEKLLASDIPLVVIETSRT 41 (140)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred CHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 88999999999977998899989889
No 124
>>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.70A {Archaeoglobus fulgidus} (A:)
Probab=20.07 E-value=64 Score=14.10 Aligned_cols=36 Identities=25% Similarity=0.317 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999999999977997999838986312259999999996587
Q gi|254780245|r 75 TAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGV 118 (120)
Q Consensus 75 ~~vG~~ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl 118 (120)
-.+|..+++.+.+.|..-+++||.. +.++.+++.|.
T Consensus 15 G~iG~~ia~~L~~~G~~V~vid~~~--------~~~~~~~~~~~ 50 (141)
T 3llv_A 15 EAAGVGLVRELTAAGKKVLAVDKSK--------EKIELLEDEGF 50 (141)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEESCH--------HHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHCCCCEEEEECHH--------HHHHHHHCCCC
T ss_conf 8899999999998799389974338--------89999870783
Done!