HHsearch results for GI: 254780245 and protein with PDBid: 1vq8_N
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...
Probab=100.00 E-value=1.1e-32 Score=213.22 Aligned_cols=103 Identities=25% Similarity=0.269 Sum_probs=94.4
Q ss_pred HHHHHCCCCCCCCEEEEEEECCCEEEEEE--ECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 76875057878824999963870999999--6279759999850210000013468667899999999999999779979
Q gi|254780245|r 15 IRRHLKSVSRGRLRLSVCRSSKHIYGQII--DDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKVGVKS 92 (120)
Q Consensus 15 ~R~k~k~~~~~~pRL~V~rSnkhiyAQiI--dd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~ia~r~~~~gI~~ 92 (120)
.|.++.. ..+|||+||+||+||||||| ||.+++|||||||.+....++....+|++||+++|.++|++++++||++
T Consensus 23 ~R~rl~~--s~kpRLvVr~SNk~I~aQii~~d~~gd~~l~sasS~el~k~g~k~~~~N~~AAy~~G~llakra~~kgi~~ 100 (187)
T 1vq8_N 23 QRLRLLK--SGKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEE 100 (187)
T ss_dssp HHHHHHT--TCSCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGGGGTCCSCSSSHHHHHHHHHHHHHHHHHTTCCB
T ss_pred HHHHHHC--CCCCEEEEEEECCEEEEEEEEECCCCCEEEEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 9999861--89976999983893899999843899989999970506540422587478999999999999998505671
Q ss_pred EEECCC--CCCCHHHHHHHHHHHHHCCCC
Q ss_conf 998389--863122599999999965878
Q gi|254780245|r 93 VYFDRG--KHLYCGRIAALADAVRKGGVS 119 (120)
Q Consensus 93 v~FDR~--g~~yHGrvka~ad~~R~~Gl~ 119 (120)
++||+| +|.|||||+|+||++|++||+
T Consensus 101 ~vfD~G~~~~~yhgRV~A~akgard~GL~ 129 (187)
T 1vq8_N 101 AVLDIGLNSPTPGSKVFAIQEGAIDAGLD 129 (187)
T ss_dssp CEEECTTSCCCTTCHHHHHHHHHHHTTCB
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 57722777886437999999999974957