HHSEARCH alignment of GI: 254780245 and SCOP domain: d2gycm1

Alignment
>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=7e-44  Score=278.24  Aligned_cols=113  Identities=42%  Similarity=0.631  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             79999989987768750578788249999638709999996279759999850210000013468667899999999999
Q gi|254780245|r    4 KKKVLARRISRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVE   83 (120)
Q Consensus         4 k~~~~~kR~~R~R~k~k~~~~~~pRL~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~ia~   83 (120)
                      |+..+.+|+.|+|+++++..  .|||+|||||+|||||||||.+++|||++||++++++..++..+|+++|+.||++||+
T Consensus         1 k~~~r~rR~~R~R~ki~~~~--~pRL~V~rSnkhiyaQiIdd~~~~tl~saST~~k~~~~~~~~~~n~~aA~~vG~~la~   78 (113)
T d2gycm1           1 KKSARIRRATRARRKLQELG--ATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAE   78 (113)
T ss_dssp             CCCCHHHHTTCSCSTTTTTT--CCCCBEEECSSCEEEEEEETTTTEEEEEEETTGGGGTSCCSCSSSHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHCCCC--CCEEEEEEECCCEEEEEEECCCCCEEEEEEEHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             90888999999999862689--9759999817817999998469917887410356665432777532899999999999


Q ss_pred             HHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             99977997999838986312259999999996587
Q gi|254780245|r   84 RAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGV  118 (120)
Q Consensus        84 r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl  118 (120)
                      +++++||++|+|||+||+|||||+||||++||+||
T Consensus        79 ra~~~gI~~vvfDR~g~~YhGrVka~ad~aRe~Gl  113 (113)
T d2gycm1          79 RALEKGIKDVSFDRSGFQYHGRVQALADAAREAGL  113 (113)
T ss_dssp             HHHHHTCCCCCCBCCSCCSSSHHHHHHHHHHHHTC
T ss_pred             HHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             99987999999879998641499999999997489


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Escherichia coli [TaxId: 562]