HHSEARCH alignment of GI: 254780245 and SCOP domain: d2j01s1

Alignment
>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=6.2e-37  Score=237.09  Aligned_cols=86  Identities=57%  Similarity=0.800  Sum_probs=82.0

Q ss_pred             CCEEEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHH
Q ss_conf             82499996387099999962797599998502100000134686678999999999999997799799983898631225
Q gi|254780245|r   26 RLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKVGVKSVYFDRGKHLYCGR  105 (120)
Q Consensus        26 ~pRL~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~ia~r~~~~gI~~v~FDR~g~~yHGr  105 (120)
                      +|||+|||||+|||||||||.+++||+|+||++++++     .+|+++|+.||++||++++++||++|+||||||+||||
T Consensus         1 R~RL~V~rSnk~iyaQiIDd~~~~tl~s~St~~k~~k-----~~~~~~A~~vG~~la~~ak~~gI~~v~FDR~g~~YHGr   75 (86)
T d2j01s1           1 RLRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLK-----GNKTEVARQVGRALAEKALALGIKQVAFDRGPYKYHGR   75 (86)
T ss_dssp             SCEEECCBCSSCBCEEEEETTTTEEEEEECSTTTCCC-----SCHHHHHHHHHHHHHHHHHHTSCCCCBCCCSTTCSSSS
T ss_pred             CCEEEEEECCCEEEEEEEECCCCEEEEEEECCCHHHC-----CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH
T ss_conf             9579999817838999997679869999821311104-----87789999999999999998799889994899722029


Q ss_pred             HHHHHHHHHHC
Q ss_conf             99999999965
Q gi|254780245|r  106 IAALADAVRKG  116 (120)
Q Consensus       106 vka~ad~~R~~  116 (120)
                      ||||||++||+
T Consensus        76 vka~Ad~~Reg   86 (86)
T d2j01s1          76 VKALAEGAREG   86 (86)
T ss_dssp             CCCCSSCTTCC
T ss_pred             HHHHHHHHHCC
T ss_conf             99999987279


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Thermus thermophilus [TaxId: 274]