HHSEARCH alignment of GI: 254780245 and SCOP domain: d2qalk1

Alignment
>d2qalk1 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escherichia coli [TaxId: 562]}
Probab=96.04  E-value=0.019  Score=32.67  Aligned_cols=85  Identities=21%  Similarity=0.229  Sum_probs=64.4

Q ss_pred             EEEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-EECCC-CCCCHHH
Q ss_conf             499996387099999962797599998502100000134686678999999999999997799799-98389-8631225
Q gi|254780245|r   28 RLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKVGVKSV-YFDRG-KHLYCGR  105 (120)
Q Consensus        28 RL~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~ia~r~~~~gI~~v-~FDR~-g~~yHGr  105 (120)
                      -+.|+.|..|....+. |.+|.+++..|+-...+++..+.  .-.||..+++.+++++++.|++.| ++=+| |.   ||
T Consensus         8 i~hI~~t~NNTiitlT-D~~G~~~~~~S~G~~gfkg~~K~--t~~Aa~~~a~~~~~~~~~~gi~~v~V~~kG~G~---GR   81 (117)
T d2qalk1           8 VAHIHASFNNTIVTIT-DRQGNALGWATAGGSGFRGSRKS--TPFAAQVAAERCADAVKEYGIKNLEVMVKGPGP---GR   81 (117)
T ss_dssp             EEEEECCSSCCEEEEE-ETTSCEEEEEETTTSSCCHHHHT--SHHHHHHHHHHHHHHHGGGTCCEEEEEEECCST---TT
T ss_pred             EEEEEECCCCEEEEEE-CCCCCEEEEEECCCCCCCCCCCC--CHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC---CH
T ss_conf             9999925798999998-79999999986323554664333--347999999999999998399689999967999---64


Q ss_pred             HHHHHHHHHHCCCC
Q ss_conf             99999999965878
Q gi|254780245|r  106 IAALADAVRKGGVS  119 (120)
Q Consensus       106 vka~ad~~R~~Gl~  119 (120)
                      - +..-++...||+
T Consensus        82 ~-~air~l~~~gl~   94 (117)
T d2qalk1          82 E-STIRALNAAGFR   94 (117)
T ss_dssp             T-HHHHHHHHTTCE
T ss_pred             H-HHHHHHHHCCCE
T ss_conf             9-999999758988


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein S11
species: Escherichia coli [TaxId: 562]