PSIBLAST alignment of GI: 254780245 and protein with PDB id: 1nkw

gi|28948932|pdb|1NKW|M Chain M, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 114
>gi|51247385|pdb|1SM1|M Chain M, Complex Of The Large Ribosomal Subunit From Deinococcus Radiodurans With Quinupristin And Dalfopristin Length = 114
 Score = 97.6 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 54/120 (45%), Positives = 70/120 (58%), Gaps = 6/120 (5%)

Query: 1   MATKKKVLARRISRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEP 60
           MAT   +  +  +R +    + + GRLRLSV RSSKHIY QIIDDS G       +L   
Sbjct: 1   MATATTIRRKLRTRRKVRTTTAASGRLRLSVYRSSKHIYAQIIDDSRG------QTLAAA 54

Query: 61  LRSSLKTGANIVAATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120
             ++LK+G     A AVG  L   A + G+K V FDRG + Y GR+ ALADA R+GG+ F
Sbjct: 55  SSAALKSGNKTDTAAAVGKALAAAAAEKGIKQVVFDRGSYKYHGRVKALADAAREGGLDF 114