RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780245|ref|YP_003064658.1| 50S ribosomal protein L18
[Candidatus Liberibacter asiaticus str. psy62]
         (120 letters)



>gnl|CDD|180156 PRK05593, rplR, 50S ribosomal protein L18; Reviewed.
          Length = 117

 Score =  130 bits (330), Expect = 7e-32
 Identities = 59/118 (50%), Positives = 77/118 (65%), Gaps = 2/118 (1%)

Query: 3   TKKKVLARRISRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLR 62
            KK+   RR  R+R+ + S +  R RLSV RS++HIY Q+IDD  G TL SAS+L + +R
Sbjct: 2   DKKEARLRRHRRVRKKI-SGTAERPRLSVFRSNRHIYAQVIDDVKGKTLASASTLEKDVR 60

Query: 63  SSLKTGANIVAATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120
           + LK G N  AA  VG L+ ERA   G+K V FDRG + Y GR+ ALADA R+ G+ F
Sbjct: 61  AGLK-GGNKEAAKKVGKLIAERAKAKGIKQVVFDRGGYKYHGRVKALADAAREAGLKF 117


>gnl|CDD|129170 TIGR00060, L18_bact, ribosomal protein L18, bacterial type.  The
           archaeal and eukaryotic type rpL18 is not detectable
           under this model.
          Length = 114

 Score = 93.3 bits (232), Expect = 1e-20
 Identities = 56/118 (47%), Positives = 71/118 (60%), Gaps = 5/118 (4%)

Query: 4   KKKVLARRISRIRRHLKSVS-RGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLR 62
           KK    RR  RIRR L+      R RL V RS++HIY Q+IDDS    L SAS+L +   
Sbjct: 1   KKSARIRRHKRIRRKLRETGEANRPRLVVFRSNRHIYAQVIDDSKSEVLASASTLEK--- 57

Query: 63  SSLKTGANIVAATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120
             LK   N  AA  VG L+ ER  + G+K V FDRG + Y GR+AALA+A R+ G++F
Sbjct: 58  -KLKYTGNKDAAKKVGKLVAERLKEKGIKDVVFDRGGYKYHGRVAALAEAAREAGLNF 114


>gnl|CDD|173330 PTZ00032, PTZ00032, 60S ribosomal protein L18; Provisional.
          Length = 211

 Score = 61.4 bits (149), Expect = 5e-11
 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 12/107 (11%)

Query: 26  RLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKT------------GANIVA 73
           R RL++  ++  +Y  I+DD   H L  + +  + L     T            G  I A
Sbjct: 105 RPRLTLKNTNNQMYATIVDDYTRHVLCFSCTNFKYLSHIFGTYPTKTTNRVRNNGGTIKA 164

Query: 74  ATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120
           A  +G L+  +A+  G+  V FDR  + Y G++ ALA+  R  G+ F
Sbjct: 165 AYELGKLIGRKALSKGISKVRFDRAHYKYAGKVEALAEGARAVGLQF 211


>gnl|CDD|181476 PRK08569, rpl18p, 50S ribosomal protein L18P; Reviewed.
          Length = 193

 Score = 34.1 bits (79), Expect = 0.010
 Identities = 35/102 (34%), Positives = 48/102 (47%), Gaps = 14/102 (13%)

Query: 16  RRHLKSVSRGRLRLSVCRSSKHIYGQIID-DSIG-HTLVSASSLNEPLRSSLKTG----- 68
           R+ LK +  G+ RL V +++KH+  QI+  D  G  TL SA S     R   K G     
Sbjct: 22  RKRLKLLLSGKPRLVVRKTNKHVIAQIVKYDPKGDRTLASAHS-----RELAKYGWKGDT 76

Query: 69  ANIVAATAVGNLLVERAVKVGVKSVYFDRGKHLYC--GRIAA 108
            N  AA   G L  ++A+K GV+    D G H      R+ A
Sbjct: 77  GNTPAAYLTGLLAGKKALKAGVEEAVLDIGLHRPTKGSRVFA 118


>gnl|CDD|177752 PLN00148, PLN00148, potassium transporter; Provisional.
          Length = 785

 Score = 27.1 bits (60), Expect = 1.1
 Identities = 10/15 (66%), Positives = 12/15 (80%)

Query: 28  RLSVCRSSKHIYGQI 42
           R+ V  +SKHIYGQI
Sbjct: 378 RVKVVHTSKHIYGQI 392


>gnl|CDD|180009 PRK05313, PRK05313, hypothetical protein; Provisional.
          Length = 452

 Score = 26.3 bits (59), Expect = 1.8
 Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 3/18 (16%)

Query: 104 GRIAALA---DAVRKGGV 118
           G  AALA   DAV+KGG 
Sbjct: 302 GTTAALALLNDAVKKGGA 319


>gnl|CDD|180831 PRK07088, PRK07088, ribonucleotide-diphosphate reductase subunit
           alpha; Validated.
          Length = 764

 Score = 25.9 bits (57), Expect = 2.4
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)

Query: 79  NLLVERAVKVGVKSVYFDRGKHL 101
           NL +E A K GVK++Y+ R K L
Sbjct: 733 NLYIE-AWKQGVKTIYYVRNKSL 754


>gnl|CDD|181604 PRK08990, PRK08990, flagellar motor protein PomA; Reviewed.
          Length = 254

 Score = 25.8 bits (57), Expect = 2.7
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)

Query: 85  AVKVGVKSVYF--DRGKHLYCGRIAALADAVRKGG 117
           AVK+  K+  F  D+ + L   +I  +ADA RKGG
Sbjct: 58  AVKIAGKAFMFKIDKPEDL-IEQIVEMADAARKGG 91


>gnl|CDD|185349 PRK15452, PRK15452, putative protease; Provisional.
          Length = 443

 Score = 25.2 bits (56), Expect = 4.1
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 7/39 (17%)

Query: 82  VERAVKVGVKSVYFD-RGK-HLYCGRIA-----ALADAV 113
           VER  K+GV S+  + R K   Y  R A     A+ DAV
Sbjct: 274 VERLTKMGVHSLKIEGRTKSFYYVARTAQVYRKAIDDAV 312


>gnl|CDD|183475 PRK12364, PRK12364, ribonucleotide-diphosphate reductase subunit
           alpha; Provisional.
          Length = 842

 Score = 24.7 bits (54), Expect = 5.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 84  RAVKVGVKSVYFDRGKHL 101
            A + GVK++Y+ R K L
Sbjct: 815 LAWEEGVKTIYYVRSKSL 832


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.322    0.134    0.371 

Gapped
Lambda     K      H
   0.267   0.0722    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,847,709
Number of extensions: 102276
Number of successful extensions: 229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 21
Length of query: 120
Length of database: 5,994,473
Length adjustment: 81
Effective length of query: 39
Effective length of database: 4,244,225
Effective search space: 165524775
Effective search space used: 165524775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.4 bits)