BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780245|ref|YP_003064658.1| 50S ribosomal protein L18
[Candidatus Liberibacter asiaticus str. psy62]
(120 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780245|ref|YP_003064658.1| 50S ribosomal protein L18 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 120
Score = 235 bits (599), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MATKKKVLARRISRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEP 60
MATKKKVLARRISRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEP
Sbjct: 1 MATKKKVLARRISRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEP 60
Query: 61 LRSSLKTGANIVAATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120
LRSSLKTGANIVAATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF
Sbjct: 61 LRSSLKTGANIVAATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120
>gi|255764462|ref|YP_003064709.2| methionyl-tRNA formyltransferase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 310
Score = 25.4 bits (54), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 9/35 (25%), Positives = 22/35 (62%)
Query: 8 LARRISRIRRHLKSVSRGRLRLSVCRSSKHIYGQI 42
L+ +I + + +S+G R++ CRS+++++ I
Sbjct: 192 LSPQIENGITYAEKISKGETRVNFCRSAENVHNHI 226
>gi|254781103|ref|YP_003065516.1| penicillin-binding transmembrane protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 598
Score = 24.3 bits (51), Expect = 0.69, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 62 RSSLKTGANIVAATAVGNLLVERAVKVGVKSVYF 95
R+ L G N+ A VGN++ A +GVK V+
Sbjct: 566 RNQLTAGINV--APMVGNIIRRSASMLGVKPVFL 597
>gi|254780521|ref|YP_003064934.1| flagellar biosynthesis repressor FlbT [Candidatus Liberibacter
asiaticus str. psy62]
Length = 153
Score = 22.7 bits (47), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 57 LNEPLRSSLKTGANIVAATAV 77
+N PLR SLK G I AV
Sbjct: 1 MNSPLRISLKAGERIFLNGAV 21
>gi|254780975|ref|YP_003065388.1| D-ribulose-5 phosphate 3-epimerase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 224
Score = 21.6 bits (44), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 82 VERAVKVGVKSVYFDRGKHLYCGRIAALADAVR 114
+ K G K ++FD + I+ AD +R
Sbjct: 23 ISNITKAGAKQIHFDVMDGCFVPNISFGADVIR 55
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.134 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,899
Number of Sequences: 1233
Number of extensions: 2062
Number of successful extensions: 5
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 120
length of database: 328,796
effective HSP length: 64
effective length of query: 56
effective length of database: 249,884
effective search space: 13993504
effective search space used: 13993504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 33 (17.3 bits)