HHsearch alignment for GI: 254780246 and conserved domain: PTZ00179

>PTZ00179 60S ribosomal protein L9; Provisional.
Probab=100.00  E-value=0  Score=287.87  Aligned_cols=170  Identities=20%  Similarity=0.288  Sum_probs=151.9

Q ss_pred             CCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEEC-CCEEEEE--ECCEEEEEECCCCCCCHHHHHHHHHEEEEEEE
Q ss_conf             97444645107997589997998999906946999826-8639997--07589985055432201338887521125897
Q gi|254780246|r    1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMS-DGISVTL--QEGMLSVATINGSKKARAAWGMSRTMINNLFH   77 (177)
Q Consensus         1 MSrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~-~~v~i~~--~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~   77 (177)
T Consensus         1 m~i~~~e~I~IPegV~vtv~~~~VtVkGp~G~L~r~f~h~~v~i~i~~~~~~i~v~~~~~~rk~~A~igT~~shI~NMik   80 (189)
T PTZ00179          1 MKIKSQDTITIPEDVTVSVKDRIVTVKGKRGTLTKDLRHLQLDFRVNKKNRTFTAVRWFGSKIPNSTINTALSHVRNMIT   80 (189)
T ss_pred             CCCCCCCEEECCCCCEEEEECCEEEEECCCCEEEEEEECCCEEEEEECCCCEEEEEECCCCHHHEEEHHHHHHHHHHHHH
T ss_conf             91235516889999899998999999989958998955695799995797489998737874140004619999998775


Q ss_pred             ECCEEEEEEEEEE--CCCCEEEECCCEEEE--EECCCCCCCCCCCCEEEEEEC----CCCEEEEEECCHHHHHHHHHHHH
Q ss_conf             5110037778740--476301220424999--951567655258850389976----99889999579989879998741
Q gi|254780246|r   78 GVTKGYERKLEIS--GVGCRAFMDGRNLKM--SLGFSHDVLYTPLEGISIFVS----KPTEIIVSGIDKQKVGHVAAEIR  149 (177)
Q Consensus        78 GVt~Gf~~~L~lv--gvgy~v~~~g~~l~l--~LG~sh~i~~~ip~~v~v~~~----k~~~I~i~G~dke~Vgq~AA~Ir  149 (177)
T Consensus        81 GVT~Gf~Ykmk~vyaHFPi~v~v~G~~v~I~NFlGEK~~R~~~i~~gv~v~~~~~~~~kdei~i~G~d~E~V~qtAA~Ie  160 (189)
T PTZ00179         81 GVTKGFRFKVRFAYAHFPISVSVENQLVEIRNFLGEKRVRRQVVADTVKVYRTDPSKVKDELVLEGNDLEQVSREAAVMH  160 (189)
T ss_pred             HCCCCEEEEEEEEEEECCEEEEECCCEEEEEECCCCCCCEEEECCCCCEEEEECCCCCCCEEEEECCCHHHHHHHHHHHH
T ss_conf             30187499999998756569998698999981246520258876899589850565558789998178899657798877


Q ss_pred             CCCCCCCCCCCC--EEECCEEEEEEE
Q ss_conf             007479857874--345370999710
Q gi|254780246|r  150 SYRSAEPYKGKG--IRYSGEVIIRKE  173 (177)
Q Consensus       150 ~~r~pepYKGKg--I~~~~e~I~~Ke  173 (177)
T Consensus       161 q~t~v---k~kD~R~F~DGIYv~eK~  183 (189)
T PTZ00179        161 QLCLV---KKKDIRKFLDGIYVQTKT  183 (189)
T ss_pred             HHHCC---CCCCCCEECCCEEEEECC
T ss_conf             64126---799665802677999755