HHsearch alignment for GI: 254780246 and conserved domain: TIGR03653
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=100.00 E-value=0 Score=356.14 Aligned_cols=163 Identities=32% Similarity=0.522 Sum_probs=154.8
Q ss_pred CCCCCCCCCCEEEEECCEEEEEECCCEEEEEEC-CCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECCEEEE
Q ss_conf 645107997589997998999906946999826-8639997075899850554322013388875211258975110037
Q gi|254780246|r 6 KKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMS-DGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVTKGYE 84 (177)
Q Consensus 6 k~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~-~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt~Gf~ 84 (177)
T Consensus 1 KkpI~IP~gV~v~i~~~~v~VkGpkG~L~~~~~~~~v~v~~~~~~i~v~~~~~~k~~~al~Gt~RslI~NmI~GVs~Gf~ 80 (170)
T TIGR03653 1 REEIEIPEGVSVTIEGNIVTVKGPKGEVTRELWYPGIEISVEDGKVVIETDFARKKDKAMVGTYRSHIKNMIKGVTEGFE 80 (170)
T ss_pred CCCEECCCCCEEEEECCEEEEECCCEEEEEEECCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHEEECCCEE
T ss_conf 98417899989999899999990992899995387246897398899972799988999999999998643174137769
Q ss_pred EEEEEECCCC--EEEECCCEEEEE--ECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 7787404763--012204249999--515676552588503899769988999957998987999874100747985787
Q gi|254780246|r 85 RKLEISGVGC--RAFMDGRNLKMS--LGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGK 160 (177)
Q Consensus 85 ~~L~lvgvgy--~v~~~g~~l~l~--LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGK 160 (177)
T Consensus 81 k~LeivgvGy~~~~~~~G~~l~l~n~lG~Sh~v~~~iP~gi~v~v~-~~~I~i~G~DKq~VGq~AA~Ir~~~k---~k~k 156 (170)
T TIGR03653 81 YKMKVVYSHFPMQVKVEGNKVVIENFLGEKAPRRAKIPGGVKVKVK-GEEVIVTGIDKEDVGQTAANIEQATR---IKGR 156 (170)
T ss_pred EEEEEEEECCEEEEEECCCEEEEECCCCCCCCEEEECCCCCEEEEE-CCEEEEEECCHHHHHHHHHHHHHHCC---CCCC
T ss_conf 9999997553189999398999951376640478739899599985-99999997789998699987466255---6899
Q ss_pred CEE--ECCEEEEEE
Q ss_conf 434--537099971
Q gi|254780246|r 161 GIR--YSGEVIIRK 172 (177)
Q Consensus 161 gI~--~~~e~I~~K 172 (177)
T Consensus 157 d~R~f~dGiyv~~K 170 (170)
T TIGR03653 157 DPRVFQDGIYIVEK 170 (170)
T ss_pred CCCEEECCEEEECC
T ss_conf 77684156899719