HHsearch alignment for GI: 254780246 and conserved domain: TIGR03654
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=100.00 E-value=0 Score=453.98 Aligned_cols=175 Identities=57% Similarity=0.947 Sum_probs=173.8
Q ss_pred CCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEECCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECCE
Q ss_conf 74446451079975899979989999069469998268639997075899850554322013388875211258975110
Q gi|254780246|r 2 SRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVTK 81 (177)
Q Consensus 2 SrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt~ 81 (177)
T Consensus 1 SriGk~pI~IP~gV~v~i~~~~v~vkGp~G~l~~~~~~~i~i~~~~~~i~v~~~~~~k~~ka~~GT~rslI~Nmi~GVt~ 80 (175)
T TIGR03654 1 SRIGKKPIAIPAGVEVTIDGNVVTVKGPKGELSRTLHPGVTVKVEDGQLTVSRPNDSKEARALHGTTRALINNMVIGVSE 80 (175)
T ss_pred CCCCCCCCCCCCCCEEEEECCEEEEECCCEEEEEECCCCEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 97666772079997899979999999799279898599749999399999998898889999999999999888734121
Q ss_pred EEEEEEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 03777874047630122042499995156765525885038997699889999579989879998741007479857874
Q gi|254780246|r 82 GYERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGKG 161 (177)
Q Consensus 82 Gf~~~L~lvgvgy~v~~~g~~l~l~LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGKg 161 (177)
T Consensus 81 Gf~k~LelvGvGYra~~~g~~L~l~LGfSH~i~~~IP~gv~v~v~k~t~I~i~G~DKq~Vgq~AA~Ir~~r~pepYKGKG 160 (175)
T TIGR03654 81 GFEKKLEIVGVGYRAQLQGKKLNLSLGYSHPVEYEIPEGITVEVPKPTEIVVKGIDKQLVGQVAAEIRAFRKPEPYKGKG 160 (175)
T ss_pred CEEEEEEEEEEEEEEEECCCEEEEECCCCCCEEEECCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 35999999972059874385877751677757016999969995899999999789999989999986158998958989
Q ss_pred EEECCEEEEEEECCC
Q ss_conf 345370999710566
Q gi|254780246|r 162 IRYSGEVIIRKEGKK 176 (177)
Q Consensus 162 I~~~~e~I~~KegKk 176 (177)
T Consensus 161 I~~~~e~I~~K~gKK 175 (175)
T TIGR03654 161 IRYAGEVVRRKEGKK 175 (175)
T ss_pred CCCCCEEEEECCCCC
T ss_conf 759785999427589