HHsearch alignment for GI: 254780246 and conserved domain: TIGR03654

>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=100.00  E-value=0  Score=453.98  Aligned_cols=175  Identities=57%  Similarity=0.947  Sum_probs=173.8

Q ss_pred             CCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEECCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECCE
Q ss_conf             74446451079975899979989999069469998268639997075899850554322013388875211258975110
Q gi|254780246|r    2 SRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVTK   81 (177)
Q Consensus         2 SrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt~   81 (177)
T Consensus         1 SriGk~pI~IP~gV~v~i~~~~v~vkGp~G~l~~~~~~~i~i~~~~~~i~v~~~~~~k~~ka~~GT~rslI~Nmi~GVt~   80 (175)
T TIGR03654         1 SRIGKKPIAIPAGVEVTIDGNVVTVKGPKGELSRTLHPGVTVKVEDGQLTVSRPNDSKEARALHGTTRALINNMVIGVSE   80 (175)
T ss_pred             CCCCCCCCCCCCCCEEEEECCEEEEECCCEEEEEECCCCEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             97666772079997899979999999799279898599749999399999998898889999999999999888734121


Q ss_pred             EEEEEEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             03777874047630122042499995156765525885038997699889999579989879998741007479857874
Q gi|254780246|r   82 GYERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGKG  161 (177)
Q Consensus        82 Gf~~~L~lvgvgy~v~~~g~~l~l~LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGKg  161 (177)
T Consensus        81 Gf~k~LelvGvGYra~~~g~~L~l~LGfSH~i~~~IP~gv~v~v~k~t~I~i~G~DKq~Vgq~AA~Ir~~r~pepYKGKG  160 (175)
T TIGR03654        81 GFEKKLEIVGVGYRAQLQGKKLNLSLGYSHPVEYEIPEGITVEVPKPTEIVVKGIDKQLVGQVAAEIRAFRKPEPYKGKG  160 (175)
T ss_pred             CEEEEEEEEEEEEEEEECCCEEEEECCCCCCEEEECCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             35999999972059874385877751677757016999969995899999999789999989999986158998958989


Q ss_pred             EEECCEEEEEEECCC
Q ss_conf             345370999710566
Q gi|254780246|r  162 IRYSGEVIIRKEGKK  176 (177)
Q Consensus       162 I~~~~e~I~~KegKk  176 (177)
T Consensus       161 I~~~~e~I~~K~gKK  175 (175)
T TIGR03654       161 IRYAGEVVRRKEGKK  175 (175)
T ss_pred             CCCCCEEEEECCCCC
T ss_conf             759785999427589