HHsearch alignment of GI: 254780246 and MMDB domain: 1nkw_E_1-109
>1nkw_E (E:1-109) 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans}
Probab=99.95 E-value=4.2e-28 Score=183.11 Aligned_cols=82 Identities=41% Similarity=0.650 Sum_probs=81.4
Q ss_pred CCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEECCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECC
Q ss_conf 97444645107997589997998999906946999826863999707589985055432201338887521125897511
Q gi|254780246|r 1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVT 80 (177)
Q Consensus 1 MSrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt 80 (177)
||||||+||.||++|+|+++++.++|+||+|+|++++++++.++++++.+.+.+++++++++|+|||+||||+|||+|||
T Consensus 28 MSrIgk~pI~IP~~V~v~i~~~~i~VkGp~G~L~~~l~~~v~i~~~~~~i~v~~~~~~kk~~a~~GT~rslI~NmI~GVt 107 (109)
T 1nkw_E 28 MSRIGKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQKHRALHGLTRTLVANAVKGVS 107 (109)
T ss_pred CCHHCCCCCCCCCCCEEEEECCEEEEECCCEEEEEECCCCEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 16304676106999789997999999828844999848872787268789995165215566766669987526699980
Q ss_pred EE
Q ss_conf 00
Q gi|254780246|r 81 KG 82 (177)
Q Consensus 81 ~G 82 (177)
+|
T Consensus 108 ~G 109 (109)
T 1nkw_E 108 DG 109 (109)
T ss_pred CC
T ss_conf 58