HHsearch results for GI: 254780246 and protein with PDBid: 2j01_H
>2j01_H 50S ribosomal protein L6; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=100.00 E-value=0 Score=438.71 Aligned_cols=176 Identities=46% Similarity=0.763 Sum_probs=174.3
Q ss_pred CCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEECCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECC
Q ss_conf 97444645107997589997998999906946999826863999707589985055432201338887521125897511
Q gi|254780246|r 1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVT 80 (177)
Q Consensus 1 MSrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt 80 (177)
||||||+||.||++|+|+++++.|+|+||+|+|++.+++.+.+..+++.+.+.++.++++++|+|||+||||+|||+||+
T Consensus 1 MSrIgk~pI~IP~gV~v~i~~~~i~vkGp~G~l~~~~~~~i~~~~~~~~i~v~~~~~~k~~ka~~GT~rsli~NmI~GVs 80 (180)
T 2j01_H 1 MSRIGRLPIPVPKGVSVEVAPGRVKVKGPKGELEVPVSPEMRVVVEEGVVRVERPSDERRHKSLHGLTRTLIANAVKGVS 80 (180)
T ss_dssp -----------CTTCEEEECSSCEEEECSSCCEECCCCSSSCCCCCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCEEEEECCEEEEECCCEEEEEEEECCCEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 98355676105999899995999999969988999971375577637517998566414689999999998616899996
Q ss_pred EEEEEEEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 00377787404763012204249999515676552588503899769988999957998987999874100747985787
Q gi|254780246|r 81 KGYERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGK 160 (177)
Q Consensus 81 ~Gf~~~L~lvgvgy~v~~~g~~l~l~LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGK 160 (177)
+||+++|+++|+|||++++++.|.|+|||||++.+.||+|++++++++|+|+|+|+|||.||||||+||++|+|||||||
T Consensus 81 ~Gf~~~L~lvGvgyr~~~~~~~l~l~lG~sh~i~~~iP~gv~v~~~~~t~I~i~G~dKe~Vgq~AA~Ir~~r~pepYkgk 160 (180)
T 2j01_H 81 EGYSKELLIKGIGYRARLVGRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQKVGQVAANIRAIRKPSAYHEK 160 (180)
T ss_dssp TCCCCEECCCSSSCEECCBTTBEEEECSSSSCEEECCCTTEEEECSSSSCEEEEESCSTTTTHHHHHHHTTSCSCSSSSS
T ss_pred CCEEEEEEEEECCCCCCCCCCEEEEEECCCCCEEEECCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 37099999950440432348467777335564587689985688558998999507799999999998741799995799
Q ss_pred CEEECCEEEEEEECCC
Q ss_conf 4345370999710566
Q gi|254780246|r 161 GIRYSGEVIIRKEGKK 176 (177)
Q Consensus 161 gI~~~~e~I~~KegKk 176 (177)
||+|+||+|++|||||
T Consensus 161 GI~~~~e~I~~K~gKk 176 (180)
T 2j01_H 161 GIYYAGEPVRLKPGKA 176 (180)
T ss_dssp SCCCSSCCCC------
T ss_pred CEEECCEEEEECCCCC
T ss_conf 8888783999817665