HHsearch results for GI: 254780246 and protein with PDBid: 3bbo_I
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana}
Probab=100.00 E-value=0 Score=444.33 Aligned_cols=176 Identities=44% Similarity=0.758 Sum_probs=171.9
Q ss_pred CCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEECCCEEEEEEC-CEEEEEECCCCCCCHHHHHHHHHEEEEEEEEC
Q ss_conf 97444645107997589997998999906946999826863999707-58998505543220133888752112589751
Q gi|254780246|r 1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQE-GMLSVATINGSKKARAAWGMSRTMINNLFHGV 79 (177)
Q Consensus 1 MSrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~-~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GV 79 (177)
||||||+||.||+||+|+++++.++|+||+|+|++.+++.+.+..++ +.+.+.+++++++++|||||+||||+|||+||
T Consensus 43 MSRIGK~pI~IP~gV~V~i~~~~i~VkGP~G~L~~~~~~~i~i~~~~~~~i~v~~~~~~kk~kal~GT~rslI~NmI~GV 122 (223)
T 3bbo_I 43 ESRIGKQPIAVPSNVTIALEGQDLKVKGPLGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDNMVVGV 122 (223)
T ss_dssp CCCCCCCCCCCSTTSCEEESSSEEEECCSSCCEEEECCSSCEEEECSSSCEEEECSSCCTTHHHHHHHHTTTTTHHHHHT
T ss_pred CCHHCCCCEECCCCCEEEEECCEEEEECCCEEEEEEECCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 10327776007999889996999999857989999968974799726619998236563679999999999997676563
Q ss_pred CEEEEEEEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 10037778740476301220424999951567655258850389976998899995799898799987410074798578
Q gi|254780246|r 80 TKGYERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKG 159 (177)
Q Consensus 80 t~Gf~~~L~lvgvgy~v~~~g~~l~l~LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKG 159 (177)
++||+|+|+++|+|||++++++.|.|+|||||||.+.||++++++++++|+|+|+|+|||+||||||+||++|+||||||
T Consensus 123 t~Gf~k~LelvGvGyra~v~g~~l~l~LG~SHpi~~~IP~gIkv~v~k~t~I~I~GiDKe~Vgq~AA~IRs~R~pepYKG 202 (223)
T 3bbo_I 123 SKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEIGQFAATVRKWRPPEPYKG 202 (223)
T ss_dssp TTCEEECEECCSTTCCEEECSSEEEECSSCSSCEEEECCSSEEEECSSTTBCEEEESSSHHHHHHHHHTTSSSCCCTTTC
T ss_pred HHCEEEEEEECCCCEEEEECCCEEEEEECCCCCEEEECCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 21004899971265179852758999815667638978987279956999999996889999999999971789989688
Q ss_pred CCEEECCEEEEEEECCC
Q ss_conf 74345370999710566
Q gi|254780246|r 160 KGIRYSGEVIIRKEGKK 176 (177)
Q Consensus 160 KgI~~~~e~I~~KegKk 176 (177)
|||||+||+|.||||||
T Consensus 203 KGI~y~~e~I~~K~gKk 219 (223)
T 3bbo_I 203 KGVKYSDEIVRRKEGKA 219 (223)
T ss_dssp CSCEETTCCCCCCCCCC
T ss_pred CCCCCCCEEEEEECCCC
T ss_conf 78558884999735665