RPSBLAST alignment of GI: 254780246 and protein with PDBid: 2j01
>2j01_H 50S ribosomal protein L6; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 3d5b_H 3d5d_H 3f1f_H 3f1h_H ... Length = 180
Score = 161 bits (409), Expect = 6e-41
Identities = 81/176 (46%), Positives = 115/176 (65%)
Query: 1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKK 60
MSRIG+ I VP GV V V +KVKGPKG+L +S + V ++EG++ V + ++
Sbjct: 1 MSRIGRLPIPVPKGVSVEVAPGRVKVKGPKGELEVPVSPEMRVVVEEGVVRVERPSDERR 60
Query: 61 ARAAWGMSRTMINNLFHGVTKGYERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEG 120
++ G++RT+I N GV++GY ++L I G+G RA + GR L++++GFSH V+ P EG
Sbjct: 61 HKSLHGLTRTLIANAVKGVSEGYSKELLIKGIGYRARLVGRALELTVGFSHPVVVEPPEG 120
Query: 121 ISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGKGIRYSGEVIIRKEGKK 176
I+ V +PT + VSGIDKQKVG VAA IR+ R Y KGI Y+GE + K GK
Sbjct: 121 ITFEVPEPTRVRVSGIDKQKVGQVAANIRAIRKPSAYHEKGIYYAGEPVRLKPGKA 176