RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780246|ref|YP_003064659.1| 50S ribosomal protein L6
[Candidatus Liberibacter asiaticus str. psy62]
(177 letters)
>d2qamg2 d.141.1.1 (G:82-176) Ribosomal protein L6 {Escherichia coli
[TaxId: 562]}
Length = 95
Score = 131 bits (331), Expect = 4e-32
Identities = 47/95 (49%), Positives = 65/95 (68%)
Query: 83 YERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVG 142
+ +KL++ GVG RA + G + +SLGFSH V + GI+ TEI++ G DKQ +G
Sbjct: 1 FTKKLQLVGVGYRAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIG 60
Query: 143 HVAAEIRSYRSAEPYKGKGIRYSGEVIIRKEGKKK 177
VAA++R+YR EPYKGKG+RY+ EV+ KE KKK
Sbjct: 61 QVAADLRAYRRPEPYKGKGVRYADEVVRTKEAKKK 95
>d2j01h2 d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus
thermophilus [TaxId: 274]}
Length = 89
Score = 121 bits (305), Expect = 4e-29
Identities = 45/87 (51%), Positives = 60/87 (68%)
Query: 83 YERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVG 142
Y ++L I G+G RA + GR L++++GFSH V+ P EGI+ V +PT + VSGIDKQKVG
Sbjct: 1 YSKELLIKGIGYRARLVGRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQKVG 60
Query: 143 HVAAEIRSYRSAEPYKGKGIRYSGEVI 169
VAA IR+ R Y KGI Y+GE +
Sbjct: 61 QVAANIRAIRKPSAYHEKGIYYAGEPV 87
>d2zjre1 d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 90
Score = 117 bits (296), Expect = 4e-28
Identities = 44/90 (48%), Positives = 59/90 (65%)
Query: 83 YERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVG 142
Y LE+ GVG RA + G+ L+M++G+SH V+ P G++ V +PT I VSGIDKQ VG
Sbjct: 1 YTINLELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVG 60
Query: 143 HVAAEIRSYRSAEPYKGKGIRYSGEVIIRK 172
VAA +R R + Y GKG+R+ GE I K
Sbjct: 61 QVAANVRKVRKPDAYHGKGVRFVGEQIALK 90
>d1rl6a2 d.141.1.1 (A:82-170) Ribosomal protein L6 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 89
Score = 115 bits (290), Expect = 2e-27
Identities = 48/87 (55%), Positives = 61/87 (70%)
Query: 83 YERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVG 142
YE+ LE+ GVG RA G+ L +S+G+SH V P EG+ I V T+IIV G DKQ+VG
Sbjct: 1 YEKALELVGVGYRASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQRVG 60
Query: 143 HVAAEIRSYRSAEPYKGKGIRYSGEVI 169
+AA IR+ R EPYKGKGIRY GE++
Sbjct: 61 ELAANIRAVRPPEPYKGKGIRYEGELV 87
>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli
[TaxId: 562]}
Length = 81
Score = 86.0 bits (213), Expect = 2e-18
Identities = 26/81 (32%), Positives = 44/81 (54%)
Query: 2 SRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKA 61
SR+ K + VP GVDV + I +KG G+L+ ++D + V + L+ +G
Sbjct: 1 SRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVKHADNTLTFGPRDGYADG 60
Query: 62 RAAWGMSRTMINNLFHGVTKG 82
A G +R ++N++ GVT+G
Sbjct: 61 WAQAGTARALLNSMVIGVTEG 81
>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 78
Score = 79.4 bits (196), Expect = 1e-16
Identities = 30/78 (38%), Positives = 45/78 (57%)
Query: 5 GKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAA 64
GK+ I VP GV V +D KVKGPKG+L+ + ++V L V + ++K RA
Sbjct: 1 GKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQKHRAL 60
Query: 65 WGMSRTMINNLFHGVTKG 82
G++RT++ N GV+ G
Sbjct: 61 HGLTRTLVANAVKGVSDG 78
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 75
Score = 76.4 bits (188), Expect = 1e-15
Identities = 25/74 (33%), Positives = 46/74 (62%)
Query: 9 IQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMS 68
I++P GV V V + + VKGPKG+L+ +++T++ +++V + K RA G +
Sbjct: 2 IEIPAGVTVTVNGNTVTVKGPKGELTRTFHPDMTITVEGNVITVTRPSDEKHHRALHGTT 61
Query: 69 RTMINNLFHGVTKG 82
R+++ N+ GV+KG
Sbjct: 62 RSLLANMVEGVSKG 75
>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus
thermophilus [TaxId: 274]}
Length = 71
Score = 76.0 bits (187), Expect = 2e-15
Identities = 26/71 (36%), Positives = 44/71 (61%)
Query: 12 PLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMSRTM 71
P GV V V +KVKGPKG+L +S + V ++EG++ V + ++ ++ G++RT+
Sbjct: 1 PKGVSVEVAPGRVKVKGPKGELEVPVSPEMRVVVEEGVVRVERPSDERRHKSLHGLTRTL 60
Query: 72 INNLFHGVTKG 82
I N GV++G
Sbjct: 61 IANAVKGVSEG 71
>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 87
Score = 70.7 bits (173), Expect = 6e-14
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMS----DGISVTLQEGMLSVATIN 56
+ + + + +P VD+ ++ + VKGP+G L + + + ++ L V
Sbjct: 2 KTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWW 61
Query: 57 GSKKARAAWGMSRTMINNLFHGVTKG 82
G++K A + + N+ GVT G
Sbjct: 62 GNRKELATVRTICSHVQNMIKGVTLG 87
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 79
Score = 68.8 bits (168), Expect = 2e-13
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 6 KKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSD-GISVTLQEGMLSVATINGSKKARAA 64
+ +++P VD + +I V+G G ++ + I V++ + + + + K +
Sbjct: 2 RVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMST 61
Query: 65 WGMSRTMINNLFHGVTKG 82
G ++ I N+FHGVT+G
Sbjct: 62 IGTFQSHIENMFHGVTEG 79
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 93
Score = 31.2 bits (71), Expect = 0.050
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 118 LEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGKGIR 163
+ + E+ VSG D + VG AA+I K +R
Sbjct: 40 HGDTDVEIDG-EELTVSGPDIEAVGQTAADI---EQLTRINDKDVR 81
>d2oqoa1 d.2.1.10 (A:57-243) Penicillin-binding protein 1a, PBP1a
{Aquifex aeolicus [TaxId: 63363]}
Length = 187
Score = 25.0 bits (54), Expect = 3.7
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 12/71 (16%)
Query: 17 VAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLF 76
VA ED +F GI + + + +++ + NLF
Sbjct: 24 VATEDR-----------NFWHHFGIDPVAIVRAA-IVNYRAGRIVQGGSTITQQLAKNLF 71
Query: 77 HGVTKGYERKL 87
+ ERK+
Sbjct: 72 LTRERTLERKI 82
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.381
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 641,726
Number of extensions: 27919
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 14
Length of query: 177
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 97
Effective length of database: 1,309,196
Effective search space: 126992012
Effective search space used: 126992012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)