HHsearch alignment of GI: 254780247 and MMDB domain: 1i6u_A_1-68

>1i6u_A (A:1-68) 30S ribosomal protein S8P; protein-RNA interactions, ribosome, RNA, X-RAY crystallography; 2.60A {Methanocaldococcus jannaschii}

Probab=99.81  E-value=7.9e-20  Score=131.66  Aligned_cols=64  Identities=39%  Similarity=0.533  Sum_probs=60.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCEEEE-ECCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEECCCC
Q ss_conf             977899997525488579978995-17578999999776312100179983487204788721676
Q gi|254780247|r    1 MSCLGDMLTRIRNANLRYKPSVVI-PFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVDLKYH   65 (129)
Q Consensus         1 mD~iad~lt~IrNA~~~~k~~v~i-p~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~Lky~   65 (129)
                      ||||||+||+||||+++++.+|.+ |+||++.+||+||++||||++|+..++++.+ .+.|+|||.
T Consensus         4 ~D~IaD~ltrIrNA~~~~~~~V~i~P~Sk~~~~il~iL~~eGYI~~f~~~~~~~~~-~i~V~Lkyr   68 (68)
T 1i6u_A            4 MDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVXQDNGYIGEFEFIEDGRAG-IFKVELIGK   68 (68)
T ss_dssp             CCHHHHHHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTSSCCEEEECCSSSC-EEEEECCSC
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCC-EEEEEEEEC
T ss_conf             47799999998879876897379706328999999999987946244773158875-589998531