HHsearch alignment of GI: 254780247 and MMDB domain: 1i6u_A_69-130
>1i6u_A (A:69-130) 30S ribosomal protein S8P; protein-RNA interactions, ribosome, RNA, X-RAY crystallography; 2.60A {Methanocaldococcus jannaschii}
Probab=99.84 E-value=9.8e-22 Score=142.38 Aligned_cols=61 Identities=28% Similarity=0.399 Sum_probs=57.8
Q ss_pred CCCCEECCCEEEECCCCCEECCHHHCCCHHCCCCEEEEECCCCEECHHHHHHCCCCCEEEEEEC
Q ss_conf 5430001416764612120328111711104971899818866003799996499958999989
Q gi|254780247|r 66 NGASVIRKIDCVSKPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKVGGEVLCSVF 129 (129)
Q Consensus 66 ~~~~vi~~i~~iSkP~~r~y~~~~~l~~~~~g~G~~IiSTskGimt~~eA~~~~iGGeil~~v~ 129 (129)
|++|+|+++++||+|++|+|.+..++| +|+|++|+|||+|||||+||+++++|||+|||||
T Consensus 2 n~~~~I~~~~~vs~pg~r~y~~~~~~~---~~~G~~IlSTskGimt~~eA~~~~iGGeiL~~vy 62 (62)
T 1i6u_A 2 NKCGAIKPRFPVKKFGYEKFEKRYLPA---RDFGILIVSTTQGVXSHEEAKKRGLGGRLLAYVY 62 (62)
T ss_dssp SCEEECSSCCEECTTCCHHHHHHHCSS---TTCCEEEEEETTEEEEHHHHHHTTCCEEEEEEEC
T ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCC---CCCEEEEEECCCCCCCHHHHHHCCCCCEEEEEEC
T ss_conf 679976551684688761145377688---9976999968965357899997399977999989