HHsearch results for GI: 254780247 and protein with PDBid: 1sei_A
>1sei_A Ribosomal protein S8; prokaryotic, rRNA-binding; 1.90A {Geobacillus stearothermophilus} SCOP: d.140.1.1
Probab=100.00 E-value=0 Score=288.46 Aligned_cols=128 Identities=38% Similarity=0.656 Sum_probs=123.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEECCCCCCCCEECCCEEEECC
Q ss_conf 97789999752548857997899517578999999776312100179983487204788721676543000141676461
Q gi|254780247|r 1 MSCLGDMLTRIRNANLRYKPSVVIPFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVDLKYHNGASVIRKIDCVSKP 80 (129)
Q Consensus 1 mD~iad~lt~IrNA~~~~k~~v~ip~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~Lky~~~~~vi~~i~~iSkP 80 (129)
.|||||||++||||++++|.+|.+|+||++.++|++|++||||++|++.++++.+ .++|.|+|.+++|+|+++++||||
T Consensus 3 ~D~iaD~Lt~IrNA~~a~k~~V~iP~Skl~~~il~vL~~eGyI~~f~~~~~~~~~-~i~v~Lky~~~~~~i~~~~~vSkp 81 (130)
T 1sei_A 3 TDPIADMLTAIRNANMVRHEKLEVPASKIKREIAEILKREGFIRDYEYIEDNKQG-ILRIFLKYGPNERVITGLKRISKP 81 (130)
T ss_dssp SHHHHHHHHHHHHHHHTTCSEEEEECCHHHHHHHHHHHHTTSEEEEEEEESSSCE-EEEEEECBSSSSBSCCCEEECCBT
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC-EEEEEECCCCCCCCCCCCEECCCC
T ss_conf 6349999998787987699889961758999999999871832014786046775-599991145776432332551235
Q ss_pred CCCEECCHHHCCCHHCCCCEEEEECCCCEECHHHHHHCCCCCEEEEEEC
Q ss_conf 2120328111711104971899818866003799996499958999989
Q gi|254780247|r 81 GRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKVGGEVLCSVF 129 (129)
Q Consensus 81 ~~r~y~~~~~l~~~~~g~G~~IiSTskGimt~~eA~~~~iGGeil~~v~ 129 (129)
|+|+|.+++++|++.+|+|++|+|||+|+|||+||+++++|||+||||-
T Consensus 82 g~r~y~~~~~l~~~~~g~G~~IlSTskGimt~~eA~~~~iGGell~~V~ 130 (130)
T 1sei_A 82 GLRVYVKAHEVPRVLNGLGIAILSTSQGVLTDKEARQKGTGGEIIAYVI 130 (130)
T ss_dssp TBCCEECGGGCCCCCTTSCEEEEEETTEEEEHHHHHHHTCCEEEEEEEC
T ss_pred CCEEECCHHHHHHHHHHCEEEEEECCCCCCCHHHHHHCCCCCEEEEEEC
T ss_conf 6203636435244553340999978997223899998299968999989