HHsearch results for GI: 254780247 and protein with PDBid: 2zkq_h
>2zkq_h 40S ribosomal protein S15AE; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_H 3jyv_H*
Probab=100.00 E-value=9.2e-44 Score=265.31 Aligned_cols=125 Identities=34% Similarity=0.500 Sum_probs=115.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEE-ECCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEECCCC-CCCCEECCCEEEE
Q ss_conf 977899997525488579978995-17578999999776312100179983487204788721676-5430001416764
Q gi|254780247|r 1 MSCLGDMLTRIRNANLRYKPSVVI-PFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVDLKYH-NGASVIRKIDCVS 78 (129)
Q Consensus 1 mD~iad~lt~IrNA~~~~k~~v~i-p~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~Lky~-~~~~vi~~i~~iS 78 (129)
|||||||||+||||++++|.+|.+ |+||++.++|++|++||||++|++.++++.+ .+.|.|+|. +++++|+++.++|
T Consensus 4 ~D~iaD~ltrIrNA~~~~k~~v~i~P~Skl~~~il~iL~~eGyI~~~~~~~~~~~~-~~~i~L~~~~~~~~~i~~r~~vs 82 (130)
T 2zkq_h 4 MNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAG-KIVVNLTGRLNKCGVISPRFDVQ 82 (130)
T ss_dssp CCHHHHHHHHHHHHHHHTCSEEEESCCCHHHHHHHHHHHHTTSSCCEEEECCSSSC-EEEEECCSCCSCEEECSSCCEEC
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCHHCEEEECCCCCC-EEEEEEECCCCCCCCCCCCEEEC
T ss_conf 36799999985719875897699860608899999999985973000670246787-04688853588878766724866
Q ss_pred CCCCCEECCHHHCCCHHCCCCEEEEECCCCEECHHHHHHCCCCCEEEEEEC
Q ss_conf 612120328111711104971899818866003799996499958999989
Q gi|254780247|r 79 KPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKVGGEVLCSVF 129 (129)
Q Consensus 79 kP~~r~y~~~~~l~~~~~g~G~~IiSTskGimt~~eA~~~~iGGeil~~v~ 129 (129)
+|+.+.|.+ ..+| .+|+|++|+|||+|||||+||+++++|||+|||||
T Consensus 83 ~~~~~~~~~-~~~~--~~g~Gi~IlSTskGimt~~eAr~~~vGGElL~~vy 130 (130)
T 2zkq_h 83 LKDLEKWQN-NLLP--SRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130 (130)
T ss_dssp SSTHHHHHH-HHCS--STTCCEEEEEETTEEEEHHHHHHHTCCEEEEEEEC
T ss_pred CCCCHHHHC-CCCC--CCCCEEEEECCCCCCCCHHHHHHHCCCCEEEEEEC
T ss_conf 865034534-6577--88824898328721012799998298963999979