HHSEARCH alignment of GI: 254780247 and SCOP domain: d1i6ua_

Alignment
>d1i6ua_ d.140.1.1 (A:) Ribosomal protein S8 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=100.00  E-value=0  Score=283.45  Aligned_cols=125  Identities=34%  Similarity=0.499  Sum_probs=118.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCEEEE-ECCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEECCCC-CCCCEECCCEEEE
Q ss_conf             977899997525488579978995-17578999999776312100179983487204788721676-5430001416764
Q gi|254780247|r    1 MSCLGDMLTRIRNANLRYKPSVVI-PFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVDLKYH-NGASVIRKIDCVS   78 (129)
Q Consensus         1 mD~iad~lt~IrNA~~~~k~~v~i-p~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~Lky~-~~~~vi~~i~~iS   78 (129)
                      |||||||||+||||++++|.+|.+ |+||++++||+||++||||++|++.++++.+ .+.+.|+|. +++|+|++++++|
T Consensus         3 ~D~iaD~ltrIrNA~~~~~~~V~i~P~Skl~~~Il~iL~~eGyI~~~~~~~~~~~~-~i~i~L~~~~~~~~~I~~~~~vs   81 (129)
T d1i6ua_           3 MDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAG-IFKVELIGKINKCGAIKPRFPVK   81 (129)
T ss_dssp             CCHHHHHHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTSSCCEEEECCSSSC-EEEEECCSCCSCEEECSSCCEEC
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CEEEEEECCCCCCCCCCCEEEEE
T ss_conf             65799999987889985998799855648999999999877778875430246777-31578861556676432147652


Q ss_pred             CCCCCEECCHHHCCCHHCCCCEEEEECCCCEECHHHHHHCCCCCEEEEEEC
Q ss_conf             612120328111711104971899818866003799996499958999989
Q gi|254780247|r   79 KPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKVGGEVLCSVF  129 (129)
Q Consensus        79 kP~~r~y~~~~~l~~~~~g~G~~IiSTskGimt~~eA~~~~iGGeil~~v~  129 (129)
                      +|++|.|   .++|++.+|+|++|||||+|||||+||+++++|||+||+||
T Consensus        82 kp~~r~~---~~~~~~~~glGi~IlSTSkGimt~~eAr~~~vGGEiLc~V~  129 (129)
T d1i6ua_          82 KFGYEKF---EKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGRLLAYVY  129 (129)
T ss_dssp             TTCCHHH---HHHHCSSTTCCEEEEEETTEEEEHHHHHHTTCCEEEEEEEC
T ss_pred             CCCCCCH---HHCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEEEEC
T ss_conf             0243432---22467889976999978966447899997499962999979


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Archaeon Methanococcus jannaschii [TaxId: 2190]