RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780247|ref|YP_003064660.1| 30S ribosomal protein S8
[Candidatus Liberibacter asiaticus str. psy62]
         (129 letters)



>d1an7a_ d.140.1.1 (A:) Ribosomal protein S8 {Thermus thermophilus
           [TaxId: 274]}
          Length = 136

 Score =  137 bits (346), Expect = 3e-34
 Identities = 54/133 (40%), Positives = 72/133 (54%), Gaps = 7/133 (5%)

Query: 4   LGDMLTRIRNANLRYKPSVVIPFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVD-- 61
           + DMLTRIRNA   YK S  +P SR    +L +L  EG+I  Y  +D             
Sbjct: 4   IADMLTRIRNATRVYKESTDVPASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLKY 63

Query: 62  -----LKYHNGASVIRKIDCVSKPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQAR 116
                        VI  I  +SKPGRR+Y   K+IP+V  GLGI I++TSKGV+   +AR
Sbjct: 64  GPRRQGPDPRPEQVIHHIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLTDREAR 123

Query: 117 ECKVGGEVLCSVF 129
           +  VGGE++C V+
Sbjct: 124 KLGVGGELICEVW 136


>d1seia_ d.140.1.1 (A:) Ribosomal protein S8 {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 130

 Score =  135 bits (340), Expect = 2e-33
 Identities = 50/126 (39%), Positives = 78/126 (61%), Gaps = 1/126 (0%)

Query: 4   LGDMLTRIRNANLRYKPSVVIPFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVDLK 63
           + DMLT IRNAN+     + +P S++   + ++LK EG+I +Y  I+  K  I L++ LK
Sbjct: 6   IADMLTAIRNANMVRHEKLEVPASKIKREIAEILKREGFIRDYEYIEDNKQGI-LRIFLK 64

Query: 64  YHNGASVIRKIDCVSKPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKVGGE 123
           Y     VI  +  +SKPG R+Y    ++P+V NGLGI I++TS+GV+   +AR+   GGE
Sbjct: 65  YGPNERVITGLKRISKPGLRVYVKAHEVPRVLNGLGIAILSTSQGVLTDKEARQKGTGGE 124

Query: 124 VLCSVF 129
           ++  V 
Sbjct: 125 IIAYVI 130


>d2gy9h1 d.140.1.1 (H:3-128) Ribosomal protein S8 {Escherichia coli
           [TaxId: 562]}
          Length = 126

 Score =  130 bits (329), Expect = 3e-32
 Identities = 52/125 (41%), Positives = 77/125 (61%), Gaps = 2/125 (1%)

Query: 4   LGDMLTRIRNANLRYKPSVVIPFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVDLK 63
           + DMLTRIRN     K +V +P S+L   + +VLK EG+I ++      K  +  ++ LK
Sbjct: 4   IADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPEL--ELTLK 61

Query: 64  YHNGASVIRKIDCVSKPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKVGGE 123
           Y  G +V+  I  VS+PG R+Y    ++P+V  GLGI +V+TSKGVM    AR+  +GGE
Sbjct: 62  YFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGE 121

Query: 124 VLCSV 128
           ++C V
Sbjct: 122 IICYV 126


>d1i6ua_ d.140.1.1 (A:) Ribosomal protein S8 {Archaeon Methanococcus
           jannaschii [TaxId: 2190]}
          Length = 129

 Score =  119 bits (300), Expect = 8e-29
 Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 4/130 (3%)

Query: 1   MSCLGDMLTRIRNANLRYKPSVVI-PFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLK 59
           M  L + L  I N     K  V I P S+L  RVL V++  GYIGE+  I+ G+  I   
Sbjct: 3   MDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKV 62

Query: 60  VDLKYHNGASVIRKIDCVSKPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECK 119
             +   N    I+    V K G   Y  F+         GI+IV+T++GVM+  +A++  
Sbjct: 63  ELIGKINKCGAIKPRFPVKKFG---YEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRG 119

Query: 120 VGGEVLCSVF 129
           +GG +L  V+
Sbjct: 120 LGGRLLAYVY 129


>d1zbma1 c.94.1.1 (A:2-261) Hypothetical protein AF1704
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 260

 Score = 23.0 bits (49), Expect = 9.2
 Identities = 6/27 (22%), Positives = 13/27 (48%)

Query: 20  PSVVIPFSRLHARVLDVLKTEGYIGEY 46
           P   I ++  ++R LD  + + +   Y
Sbjct: 205 PDEAIEYAMKYSRGLDRERAKRFAMMY 231


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.141    0.426 

Gapped
Lambda     K      H
   0.267   0.0699    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 481,847
Number of extensions: 20864
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 12
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (22.3 bits)