RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780247|ref|YP_003064660.1| 30S ribosomal protein S8 [Candidatus Liberibacter asiaticus str. psy62] (129 letters) >d1an7a_ d.140.1.1 (A:) Ribosomal protein S8 {Thermus thermophilus [TaxId: 274]} Length = 136 Score = 137 bits (346), Expect = 3e-34 Identities = 54/133 (40%), Positives = 72/133 (54%), Gaps = 7/133 (5%) Query: 4 LGDMLTRIRNANLRYKPSVVIPFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVD-- 61 + DMLTRIRNA YK S +P SR +L +L EG+I Y +D Sbjct: 4 IADMLTRIRNATRVYKESTDVPASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLKY 63 Query: 62 -----LKYHNGASVIRKIDCVSKPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQAR 116 VI I +SKPGRR+Y K+IP+V GLGI I++TSKGV+ +AR Sbjct: 64 GPRRQGPDPRPEQVIHHIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLTDREAR 123 Query: 117 ECKVGGEVLCSVF 129 + VGGE++C V+ Sbjct: 124 KLGVGGELICEVW 136 >d1seia_ d.140.1.1 (A:) Ribosomal protein S8 {Bacillus stearothermophilus [TaxId: 1422]} Length = 130 Score = 135 bits (340), Expect = 2e-33 Identities = 50/126 (39%), Positives = 78/126 (61%), Gaps = 1/126 (0%) Query: 4 LGDMLTRIRNANLRYKPSVVIPFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVDLK 63 + DMLT IRNAN+ + +P S++ + ++LK EG+I +Y I+ K I L++ LK Sbjct: 6 IADMLTAIRNANMVRHEKLEVPASKIKREIAEILKREGFIRDYEYIEDNKQGI-LRIFLK 64 Query: 64 YHNGASVIRKIDCVSKPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKVGGE 123 Y VI + +SKPG R+Y ++P+V NGLGI I++TS+GV+ +AR+ GGE Sbjct: 65 YGPNERVITGLKRISKPGLRVYVKAHEVPRVLNGLGIAILSTSQGVLTDKEARQKGTGGE 124 Query: 124 VLCSVF 129 ++ V Sbjct: 125 IIAYVI 130 >d2gy9h1 d.140.1.1 (H:3-128) Ribosomal protein S8 {Escherichia coli [TaxId: 562]} Length = 126 Score = 130 bits (329), Expect = 3e-32 Identities = 52/125 (41%), Positives = 77/125 (61%), Gaps = 2/125 (1%) Query: 4 LGDMLTRIRNANLRYKPSVVIPFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVDLK 63 + DMLTRIRN K +V +P S+L + +VLK EG+I ++ K + ++ LK Sbjct: 4 IADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPEL--ELTLK 61 Query: 64 YHNGASVIRKIDCVSKPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKVGGE 123 Y G +V+ I VS+PG R+Y ++P+V GLGI +V+TSKGVM AR+ +GGE Sbjct: 62 YFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGE 121 Query: 124 VLCSV 128 ++C V Sbjct: 122 IICYV 126 >d1i6ua_ d.140.1.1 (A:) Ribosomal protein S8 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 129 Score = 119 bits (300), Expect = 8e-29 Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 4/130 (3%) Query: 1 MSCLGDMLTRIRNANLRYKPSVVI-PFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLK 59 M L + L I N K V I P S+L RVL V++ GYIGE+ I+ G+ I Sbjct: 3 MDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKV 62 Query: 60 VDLKYHNGASVIRKIDCVSKPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECK 119 + N I+ V K G Y F+ GI+IV+T++GVM+ +A++ Sbjct: 63 ELIGKINKCGAIKPRFPVKKFG---YEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRG 119 Query: 120 VGGEVLCSVF 129 +GG +L V+ Sbjct: 120 LGGRLLAYVY 129 >d1zbma1 c.94.1.1 (A:2-261) Hypothetical protein AF1704 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 260 Score = 23.0 bits (49), Expect = 9.2 Identities = 6/27 (22%), Positives = 13/27 (48%) Query: 20 PSVVIPFSRLHARVLDVLKTEGYIGEY 46 P I ++ ++R LD + + + Y Sbjct: 205 PDEAIEYAMKYSRGLDRERAKRFAMMY 231 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.324 0.141 0.426 Gapped Lambda K H 0.267 0.0699 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 481,847 Number of extensions: 20864 Number of successful extensions: 77 Number of sequences better than 10.0: 1 Number of HSP's gapped: 72 Number of HSP's successfully gapped: 12 Length of query: 129 Length of database: 2,407,596 Length adjustment: 76 Effective length of query: 53 Effective length of database: 1,364,116 Effective search space: 72298148 Effective search space used: 72298148 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 48 (22.3 bits)