BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780247|ref|YP_003064660.1| 30S ribosomal protein S8
[Candidatus Liberibacter asiaticus str. psy62]
(129 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780247|ref|YP_003064660.1| 30S ribosomal protein S8 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 129
Score = 264 bits (675), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MSCLGDMLTRIRNANLRYKPSVVIPFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKV 60
MSCLGDMLTRIRNANLRYKPSVVIPFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKV
Sbjct: 1 MSCLGDMLTRIRNANLRYKPSVVIPFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKV 60
Query: 61 DLKYHNGASVIRKIDCVSKPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKV 120
DLKYHNGASVIRKIDCVSKPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKV
Sbjct: 61 DLKYHNGASVIRKIDCVSKPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKV 120
Query: 121 GGEVLCSVF 129
GGEVLCSVF
Sbjct: 121 GGEVLCSVF 129
>gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1246
Score = 22.7 bits (47), Expect = 2.2, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 83 RLYSSFKDIPQVCNGLGIMIVTTSKGVMAG 112
RLY F+DIPQ L I++ S+ ++ G
Sbjct: 787 RLYGIFQDIPQEQPPL-YTIISGSEKILQG 815
>gi|254780335|ref|YP_003064748.1| colicin V production protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 156
Score = 22.3 bits (46), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 97 GLGIMIVTTSKGVMAGHQARE 117
GL ++I+TTS + H++RE
Sbjct: 111 GLFLLIITTSCWNLIVHESRE 131
>gi|254780924|ref|YP_003065337.1| potassium-efflux system protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 609
Score = 21.2 bits (43), Expect = 6.8, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 22 VVIPFSRLHARVLDVLKTEGYIGEYCEIDAGKG 54
VVI F R A L + + IGE+ I A G
Sbjct: 331 VVIAFGRSVATALTIAASLSQIGEFSFILANLG 363
>gi|254780939|ref|YP_003065352.1| type I signal peptidase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 248
Score = 20.8 bits (42), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 55 RIQLKVDLKYHNGASVIRKID 75
RI L+ + Y NGA V+R ++
Sbjct: 114 RISLEKGIIYINGAPVVRHME 134
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.324 0.141 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,642
Number of Sequences: 1233
Number of extensions: 3253
Number of successful extensions: 11
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 6
length of query: 129
length of database: 328,796
effective HSP length: 65
effective length of query: 64
effective length of database: 248,651
effective search space: 15913664
effective search space used: 15913664
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 33 (17.3 bits)