RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780248|ref|YP_003064661.1| 30S ribosomal protein S14
[Candidatus Liberibacter asiaticus str. psy62]
(101 letters)
>gnl|CDD|181574 PRK08881, rpsN, 30S ribosomal protein S14; Reviewed.
Length = 101
Score = 139 bits (352), Expect = 2e-34
Identities = 54/101 (53%), Positives = 75/101 (74%)
Query: 1 MAKVSAVERNKRRLRVVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGSRVRV 60
MAK S + R K+R ++VAK A+KR LK I+ D +++ EER++A L+L LPR+ S R+
Sbjct: 1 MAKKSMIAREKKRKKLVAKYAAKRAELKAIISDPNLSDEERYEARLKLQKLPRNSSPTRL 60
Query: 61 RNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW 101
RNRCE++GR RG YR F LSR+ LREL G+IPG++K+SW
Sbjct: 61 RNRCELTGRPRGYYRKFGLSRIKLRELAHRGEIPGVVKASW 101
>gnl|CDD|181216 PRK08061, rpsN, 30S ribosomal protein S14; Reviewed.
Length = 61
Score = 59.5 bits (145), Expect = 2e-10
Identities = 23/45 (51%), Positives = 28/45 (62%)
Query: 57 RVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW 101
+VR RCE GR VYR F L R+ REL G+IPG+ K+SW
Sbjct: 17 KVRAYTRCERCGRPHSVYRKFGLCRICFRELAYKGQIPGVKKASW 61
>gnl|CDD|180742 PRK06911, rpsN, 30S ribosomal protein S14; Reviewed.
Length = 100
Score = 55.8 bits (134), Expect = 2e-09
Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 1 MAKVSAVERNKRRLRVVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGSRVRV 60
MAK S + R +R ++V K +R LK+++ S + ++ +L LP + + VR
Sbjct: 1 MAKKSMLMRESKRAKLVEKYRQRRNELKQLI-KSSDDFQVIMESQAKLAKLPVNSNPVRY 59
Query: 61 RNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW 101
RC+ GR VYR F L R+ LR+ VG IPG KSSW
Sbjct: 60 VTRCKQCGRPHAVYRKFNLCRICLRQQLMVGNIPGGRKSSW 100
>gnl|CDD|148421 pfam06804, Lipoprotein_18, NlpB/DapX lipoprotein. This family
consists of a number of bacterial lipoproteins often
known as NlpB or DapX. This lipoprotein is detected in
outer membrane vesicles in Escherichia coli and appears
to be nonessential.
Length = 303
Score = 29.0 bits (65), Expect = 0.27
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 28 KKIVMDKSVTLEERFDAMLQLGSLP--RDGSRVRVRNRCEISGRSRGVYRDFRLSRLALR 85
+++ ++++ ++ + DA ++ + R V++ +R EIS +G ++S L R
Sbjct: 82 ARMLQERNIPIQSQTDAGIETDWVTWNRADEDVQIGSRYEISVVEQGNRHALKVSLLDWR 141
Query: 86 ELGGV 90
E GGV
Sbjct: 142 ENGGV 146
>gnl|CDD|139904 PRK13844, PRK13844, recombination protein RecR; Provisional.
Length = 200
Score = 28.4 bits (63), Expect = 0.36
Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Query: 3 KVSAVERNKRRLRVVAKQASKRLALKKIVMDKS 35
K+SAV + R+L + K++S+RLAL ++DKS
Sbjct: 9 KISAVIESLRKLPTIGKKSSQRLAL--YLLDKS 39
>gnl|CDD|181354 PRK08287, PRK08287, cobalt-precorrin-6Y C(15)-methyltransferase;
Validated.
Length = 187
Score = 26.5 bits (59), Expect = 1.4
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 3 KVSAVERNKRRLRVVAKQASKRLALKKIVMDKS---VTLEERFDAMLQLGS 50
+V+A+ERN LR++ K+ +R I + + L + DA+ GS
Sbjct: 57 QVTAIERNPDALRLI-KENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGS 106
>gnl|CDD|181559 PRK08813, PRK08813, threonine dehydratase; Provisional.
Length = 349
Score = 26.1 bits (57), Expect = 1.8
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 16 VVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGS-RVRVRNRCEISGRSRGVY 74
V+A QA L++ + + ERF L+L +L R GS +VR ++G RG
Sbjct: 26 VLAAQAR----LRRYLSPTPLHYAERFGVWLKLENLQRTGSYKVRGALNALLAGLERGDE 81
Query: 75 R 75
R
Sbjct: 82 R 82
>gnl|CDD|151951 pfam11514, DUF3219, Protein of unknown function (DUF3219). This
family of proteins with unknown function appears to be
restricted to Bacillaceae. Some members in this family
of proteins are annotated as YkvR however this cannot
be confirmed.
Length = 95
Score = 26.0 bits (57), Expect = 2.5
Identities = 24/82 (29%), Positives = 28/82 (34%), Gaps = 6/82 (7%)
Query: 10 NKRRLRVVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGSRVRVRNRCEISGR 69
N + V A Q +KI D VT E D L D V V R
Sbjct: 6 NNVTIDVAAYQEESVEGKRKIAFDFKVTSETYHDIATLLYEKTFD---VEVPER---DLA 59
Query: 70 SRGVYRDFRLSRLALRELGGVG 91
RG ++ S L E G VG
Sbjct: 60 FRGEITNYSTSLTNLYEPGAVG 81
>gnl|CDD|130341 TIGR01274, ACC_deam, 1-aminocyclopropane-1-carboxylate deaminase.
This pyridoxal phosphate-dependent enzyme degrades
1-aminocyclopropane-1-carboxylate, which in plants is a
precursor of the ripening hormone ethylene, to ammonia
and alpha-ketoglutarate. This model includes all members
of this family for which function has been demonstrated
experimentally, but excludes a closely related family
often annotated as putative members of this family.
Length = 337
Score = 25.6 bits (56), Expect = 3.2
Identities = 7/36 (19%), Positives = 22/36 (61%)
Query: 7 VERNKRRLRVVAKQASKRLALKKIVMDKSVTLEERF 42
E+ + ++ +A+ ++++ L++ + + V L+ RF
Sbjct: 227 PEQTRAQILRIARNTAEKIGLERDITEDDVVLDTRF 262
>gnl|CDD|152312 pfam11876, DUF3396, Protein of unknown function (DUF3396). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and viruses. Proteins
in this family are typically between 302 to 382 amino
acids in length.
Length = 208
Score = 25.0 bits (55), Expect = 4.2
Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 11/67 (16%)
Query: 39 EERFDAM----LQLGSLPRDGSRVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIP 94
E F A L +G SR + R +GV L L +LGGV +
Sbjct: 76 SEYFLAQRYPGLDVGDPGHTESRH-------LGDRIKGVNWLTFLGAPLLEQLGGVDALR 128
Query: 95 GIIKSSW 101
+ W
Sbjct: 129 SELPPDW 135
>gnl|CDD|148714 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87.
This family consists of several Nucleopolyhedrovirus
capsid protein P87 sequences. P87 is expressed late in
infection and concentrated in infected cell nuclei.
Length = 606
Score = 24.8 bits (54), Expect = 4.5
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Query: 8 ERNKRRLRVVAKQASKR--LALKKIVMDKSVTLEERFDAMLQL-GSLPRDGSRVRVRNRC 64
++N + +A Q R A+ I+ +L ++ D + + SL G N
Sbjct: 3 DQNSLLIAKLAGQILTRDIAAVDVIMHTPERSLNQKLDTLTSMIDSLSPGGM-----NAA 57
Query: 65 EISGRSRGVYRDFRLSRLALR 85
I S + +D+ L L+
Sbjct: 58 LIQNNSILIAQDYVLRYRVLQ 78
>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 438
Score = 24.7 bits (54), Expect = 5.7
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 20 QASKRLALKKIVMDKSVTLEERFDAM 45
+A K LA K K V L E AM
Sbjct: 13 KAGKTLAAKLASAGKKVALVEESKAM 38
>gnl|CDD|184684 PRK14451, PRK14451, acylphosphatase; Provisional.
Length = 89
Score = 24.5 bits (53), Expect = 6.5
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Query: 63 RCEISGRSRGVYRDFRLS 80
RC ISGR +GV+ FR S
Sbjct: 6 RCYISGRVQGVW--FRAS 21
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.323 0.136 0.377
Gapped
Lambda K H
0.267 0.0626 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,657,992
Number of extensions: 97099
Number of successful extensions: 219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 30
Length of query: 101
Length of database: 5,994,473
Length adjustment: 68
Effective length of query: 33
Effective length of database: 4,525,129
Effective search space: 149329257
Effective search space used: 149329257
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.3 bits)