RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780248|ref|YP_003064661.1| 30S ribosomal protein S14 [Candidatus Liberibacter asiaticus str. psy62] (101 letters) >gnl|CDD|181574 PRK08881, rpsN, 30S ribosomal protein S14; Reviewed. Length = 101 Score = 139 bits (352), Expect = 2e-34 Identities = 54/101 (53%), Positives = 75/101 (74%) Query: 1 MAKVSAVERNKRRLRVVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGSRVRV 60 MAK S + R K+R ++VAK A+KR LK I+ D +++ EER++A L+L LPR+ S R+ Sbjct: 1 MAKKSMIAREKKRKKLVAKYAAKRAELKAIISDPNLSDEERYEARLKLQKLPRNSSPTRL 60 Query: 61 RNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW 101 RNRCE++GR RG YR F LSR+ LREL G+IPG++K+SW Sbjct: 61 RNRCELTGRPRGYYRKFGLSRIKLRELAHRGEIPGVVKASW 101 >gnl|CDD|181216 PRK08061, rpsN, 30S ribosomal protein S14; Reviewed. Length = 61 Score = 59.5 bits (145), Expect = 2e-10 Identities = 23/45 (51%), Positives = 28/45 (62%) Query: 57 RVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW 101 +VR RCE GR VYR F L R+ REL G+IPG+ K+SW Sbjct: 17 KVRAYTRCERCGRPHSVYRKFGLCRICFRELAYKGQIPGVKKASW 61 >gnl|CDD|180742 PRK06911, rpsN, 30S ribosomal protein S14; Reviewed. Length = 100 Score = 55.8 bits (134), Expect = 2e-09 Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 1/101 (0%) Query: 1 MAKVSAVERNKRRLRVVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGSRVRV 60 MAK S + R +R ++V K +R LK+++ S + ++ +L LP + + VR Sbjct: 1 MAKKSMLMRESKRAKLVEKYRQRRNELKQLI-KSSDDFQVIMESQAKLAKLPVNSNPVRY 59 Query: 61 RNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW 101 RC+ GR VYR F L R+ LR+ VG IPG KSSW Sbjct: 60 VTRCKQCGRPHAVYRKFNLCRICLRQQLMVGNIPGGRKSSW 100 >gnl|CDD|148421 pfam06804, Lipoprotein_18, NlpB/DapX lipoprotein. This family consists of a number of bacterial lipoproteins often known as NlpB or DapX. This lipoprotein is detected in outer membrane vesicles in Escherichia coli and appears to be nonessential. Length = 303 Score = 29.0 bits (65), Expect = 0.27 Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 2/65 (3%) Query: 28 KKIVMDKSVTLEERFDAMLQLGSLP--RDGSRVRVRNRCEISGRSRGVYRDFRLSRLALR 85 +++ ++++ ++ + DA ++ + R V++ +R EIS +G ++S L R Sbjct: 82 ARMLQERNIPIQSQTDAGIETDWVTWNRADEDVQIGSRYEISVVEQGNRHALKVSLLDWR 141 Query: 86 ELGGV 90 E GGV Sbjct: 142 ENGGV 146 >gnl|CDD|139904 PRK13844, PRK13844, recombination protein RecR; Provisional. Length = 200 Score = 28.4 bits (63), Expect = 0.36 Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 2/33 (6%) Query: 3 KVSAVERNKRRLRVVAKQASKRLALKKIVMDKS 35 K+SAV + R+L + K++S+RLAL ++DKS Sbjct: 9 KISAVIESLRKLPTIGKKSSQRLAL--YLLDKS 39 >gnl|CDD|181354 PRK08287, PRK08287, cobalt-precorrin-6Y C(15)-methyltransferase; Validated. Length = 187 Score = 26.5 bits (59), Expect = 1.4 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%) Query: 3 KVSAVERNKRRLRVVAKQASKRLALKKIVMDKS---VTLEERFDAMLQLGS 50 +V+A+ERN LR++ K+ +R I + + L + DA+ GS Sbjct: 57 QVTAIERNPDALRLI-KENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGS 106 >gnl|CDD|181559 PRK08813, PRK08813, threonine dehydratase; Provisional. Length = 349 Score = 26.1 bits (57), Expect = 1.8 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%) Query: 16 VVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGS-RVRVRNRCEISGRSRGVY 74 V+A QA L++ + + ERF L+L +L R GS +VR ++G RG Sbjct: 26 VLAAQAR----LRRYLSPTPLHYAERFGVWLKLENLQRTGSYKVRGALNALLAGLERGDE 81 Query: 75 R 75 R Sbjct: 82 R 82 >gnl|CDD|151951 pfam11514, DUF3219, Protein of unknown function (DUF3219). This family of proteins with unknown function appears to be restricted to Bacillaceae. Some members in this family of proteins are annotated as YkvR however this cannot be confirmed. Length = 95 Score = 26.0 bits (57), Expect = 2.5 Identities = 24/82 (29%), Positives = 28/82 (34%), Gaps = 6/82 (7%) Query: 10 NKRRLRVVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGSRVRVRNRCEISGR 69 N + V A Q +KI D VT E D L D V V R Sbjct: 6 NNVTIDVAAYQEESVEGKRKIAFDFKVTSETYHDIATLLYEKTFD---VEVPER---DLA 59 Query: 70 SRGVYRDFRLSRLALRELGGVG 91 RG ++ S L E G VG Sbjct: 60 FRGEITNYSTSLTNLYEPGAVG 81 >gnl|CDD|130341 TIGR01274, ACC_deam, 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family. Length = 337 Score = 25.6 bits (56), Expect = 3.2 Identities = 7/36 (19%), Positives = 22/36 (61%) Query: 7 VERNKRRLRVVAKQASKRLALKKIVMDKSVTLEERF 42 E+ + ++ +A+ ++++ L++ + + V L+ RF Sbjct: 227 PEQTRAQILRIARNTAEKIGLERDITEDDVVLDTRF 262 >gnl|CDD|152312 pfam11876, DUF3396, Protein of unknown function (DUF3396). This family of proteins are functionally uncharacterized. This protein is found in bacteria and viruses. Proteins in this family are typically between 302 to 382 amino acids in length. Length = 208 Score = 25.0 bits (55), Expect = 4.2 Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 11/67 (16%) Query: 39 EERFDAM----LQLGSLPRDGSRVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIP 94 E F A L +G SR + R +GV L L +LGGV + Sbjct: 76 SEYFLAQRYPGLDVGDPGHTESRH-------LGDRIKGVNWLTFLGAPLLEQLGGVDALR 128 Query: 95 GIIKSSW 101 + W Sbjct: 129 SELPPDW 135 >gnl|CDD|148714 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87. This family consists of several Nucleopolyhedrovirus capsid protein P87 sequences. P87 is expressed late in infection and concentrated in infected cell nuclei. Length = 606 Score = 24.8 bits (54), Expect = 4.5 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 8/81 (9%) Query: 8 ERNKRRLRVVAKQASKR--LALKKIVMDKSVTLEERFDAMLQL-GSLPRDGSRVRVRNRC 64 ++N + +A Q R A+ I+ +L ++ D + + SL G N Sbjct: 3 DQNSLLIAKLAGQILTRDIAAVDVIMHTPERSLNQKLDTLTSMIDSLSPGGM-----NAA 57 Query: 65 EISGRSRGVYRDFRLSRLALR 85 I S + +D+ L L+ Sbjct: 58 LIQNNSILIAQDYVLRYRVLQ 78 >gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional. Length = 438 Score = 24.7 bits (54), Expect = 5.7 Identities = 11/26 (42%), Positives = 12/26 (46%) Query: 20 QASKRLALKKIVMDKSVTLEERFDAM 45 +A K LA K K V L E AM Sbjct: 13 KAGKTLAAKLASAGKKVALVEESKAM 38 >gnl|CDD|184684 PRK14451, PRK14451, acylphosphatase; Provisional. Length = 89 Score = 24.5 bits (53), Expect = 6.5 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 2/18 (11%) Query: 63 RCEISGRSRGVYRDFRLS 80 RC ISGR +GV+ FR S Sbjct: 6 RCYISGRVQGVW--FRAS 21 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.323 0.136 0.377 Gapped Lambda K H 0.267 0.0626 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 1,657,992 Number of extensions: 97099 Number of successful extensions: 219 Number of sequences better than 10.0: 1 Number of HSP's gapped: 219 Number of HSP's successfully gapped: 30 Length of query: 101 Length of database: 5,994,473 Length adjustment: 68 Effective length of query: 33 Effective length of database: 4,525,129 Effective search space: 149329257 Effective search space used: 149329257 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 50 (23.3 bits)