RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780248|ref|YP_003064661.1| 30S ribosomal protein S14 [Candidatus Liberibacter asiaticus str. psy62] (101 letters) >3i1m_N 30S ribosomal protein S14; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_N* 3e1a_G 3e1c_G 1vs5_N 3i1o_N 3i1q_N 3i1s_N 3i1z_N 3i21_N 2qal_N* 1p6g_N 1p87_N 2aw7_N 2avy_N 2i2u_N 2i2p_N* 2qan_N* 2qb9_N* 2qbb_N* 2qbd_N ... Length = 101 Score = 108 bits (271), Expect = 3e-25 Identities = 45/101 (44%), Positives = 64/101 (63%) Query: 1 MAKVSAVERNKRRLRVVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGSRVRV 60 MAK S R +R+ + K +KR LK I+ D + + E+R++A+L+L +LPRD S R Sbjct: 1 MAKQSMKAREVKRVALADKYFAKRAELKAIISDVNASDEDRWNAVLKLQTLPRDSSPSRQ 60 Query: 61 RNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW 101 RNRC +GR G R F LSR+ +RE G+IPG+ K+SW Sbjct: 61 RNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW 101 >3ofo_N 30S ribosomal protein S14; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 1p6g_N 1p87_N 2aw7_N 2avy_N 2i2u_N 2i2p_N* 2qan_N* 2qb9_N* 2qbb_N* 2qbd_N 2qbf_N 2qbh_N* 2qbj_N* 2qou_N* 2qow_N* 2qoy_N* 2qp0_N* 2vho_N 2vhp_N 2z4k_N* ... Length = 100 Score = 108 bits (271), Expect = 3e-25 Identities = 44/100 (44%), Positives = 63/100 (63%) Query: 2 AKVSAVERNKRRLRVVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGSRVRVR 61 AK S R +R+ + K +KR LK I+ D + + E+R++A+L+L +LPRD S R R Sbjct: 1 AKQSMKAREVKRVALADKYFAKRAELKAIISDVNASDEDRWNAVLKLQTLPRDSSPSRQR 60 Query: 62 NRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW 101 NRC +GR G R F LSR+ +RE G+IPG+ K+SW Sbjct: 61 NRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW 100 >3bbn_N Ribosomal protein S14; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 100 Score = 106 bits (265), Expect = 2e-24 Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 1/101 (0%) Query: 1 MAKVSAVERNKRRLRVVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGSRVRV 60 MA+ S ++R K+R + K R + K+ + K +L ++++ +L S PR+ + R+ Sbjct: 1 MARKSLIQREKKRRNLEQKYHLIRRSSKQE-IRKVTSLSDKWEIHGKLQSPPRNSAPARL 59 Query: 61 RNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW 101 RC ++GR R RDF LS LRE+ +PG +SSW Sbjct: 60 HRRCFLTGRPRANIRDFGLSGHILREMVHTCLLPGATRSSW 100 >2vqe_N 30S ribosomal protein S14 type Z; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: g.39.1.7 PDB: 1gix_Q* 1hnw_N* 1hnx_N* 1hnz_N* 1hr0_N 1ibk_N* 1ibl_N* 1ibm_N 1jgo_Q* 1jgp_Q* 1jgq_Q* 1ml5_Q* 1xmo_N* 1xmq_N* 1xnq_N* 1xnr_N* 1yl4_Q 2b64_N* 2b9m_N* 2b9o_N* ... Length = 61 Score = 67.0 bits (164), Expect = 1e-12 Identities = 23/46 (50%), Positives = 30/46 (65%) Query: 56 SRVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW 101 +VR RC GR+R VYR F L R+ LREL G++PG+ K+SW Sbjct: 16 FKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW 61 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 35.7 bits (81), Expect = 0.002 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 10/30 (33%) Query: 19 KQASKRL--ALKKIVMDKS-------VTLE 39 KQA K+L +L K+ D S T+E Sbjct: 19 KQALKKLQASL-KLYADDSAPALAIKATME 47 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 24.9 bits (54), Expect = 4.9 Identities = 8/16 (50%), Positives = 10/16 (62%), Gaps = 3/16 (18%) Query: 48 LGSLP---RDGSRVRV 60 LG L +DG+ VRV Sbjct: 512 LGVLTHRNKDGTGVRV 527 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.323 0.136 0.377 Gapped Lambda K H 0.267 0.0614 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 864,590 Number of extensions: 37407 Number of successful extensions: 103 Number of sequences better than 10.0: 1 Number of HSP's gapped: 102 Number of HSP's successfully gapped: 9 Length of query: 101 Length of database: 5,693,230 Length adjustment: 66 Effective length of query: 35 Effective length of database: 4,093,126 Effective search space: 143259410 Effective search space used: 143259410 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 50 (23.3 bits)