RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780248|ref|YP_003064661.1| 30S ribosomal protein S14
[Candidatus Liberibacter asiaticus str. psy62]
         (101 letters)



>3i1m_N 30S ribosomal protein S14; ribosome structure, protein-RNA complex,
           ribonucleoprotein, ribosomal protein, RNA-binding,
           rRNA-binding, antibiotic resistance; 3.19A {Escherichia
           coli k-12} PDB: 1vs7_N* 3e1a_G 3e1c_G 1vs5_N 3i1o_N
           3i1q_N 3i1s_N 3i1z_N 3i21_N 2qal_N* 1p6g_N 1p87_N 2aw7_N
           2avy_N 2i2u_N 2i2p_N* 2qan_N* 2qb9_N* 2qbb_N* 2qbd_N ...
          Length = 101

 Score =  108 bits (271), Expect = 3e-25
 Identities = 45/101 (44%), Positives = 64/101 (63%)

Query: 1   MAKVSAVERNKRRLRVVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGSRVRV 60
           MAK S   R  +R+ +  K  +KR  LK I+ D + + E+R++A+L+L +LPRD S  R 
Sbjct: 1   MAKQSMKAREVKRVALADKYFAKRAELKAIISDVNASDEDRWNAVLKLQTLPRDSSPSRQ 60

Query: 61  RNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW 101
           RNRC  +GR  G  R F LSR+ +RE    G+IPG+ K+SW
Sbjct: 61  RNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW 101


>3ofo_N 30S ribosomal protein S14; protein biosynthesis, ribosomes, RNA,
           tRNA, transfer, eryThr ketolide, macrolide, antibiotic,
           EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 1p6g_N
           1p87_N 2aw7_N 2avy_N 2i2u_N 2i2p_N* 2qan_N* 2qb9_N*
           2qbb_N* 2qbd_N 2qbf_N 2qbh_N* 2qbj_N* 2qou_N* 2qow_N*
           2qoy_N* 2qp0_N* 2vho_N 2vhp_N 2z4k_N* ...
          Length = 100

 Score =  108 bits (271), Expect = 3e-25
 Identities = 44/100 (44%), Positives = 63/100 (63%)

Query: 2   AKVSAVERNKRRLRVVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGSRVRVR 61
           AK S   R  +R+ +  K  +KR  LK I+ D + + E+R++A+L+L +LPRD S  R R
Sbjct: 1   AKQSMKAREVKRVALADKYFAKRAELKAIISDVNASDEDRWNAVLKLQTLPRDSSPSRQR 60

Query: 62  NRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW 101
           NRC  +GR  G  R F LSR+ +RE    G+IPG+ K+SW
Sbjct: 61  NRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW 100


>3bbn_N Ribosomal protein S14; small ribosomal subunit, spinach chloroplast
           ribosome, ribonucleoprotein particle, macromolecular
           complex; 9.40A {Spinacea oleracea}
          Length = 100

 Score =  106 bits (265), Expect = 2e-24
 Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 1/101 (0%)

Query: 1   MAKVSAVERNKRRLRVVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGSRVRV 60
           MA+ S ++R K+R  +  K    R + K+  + K  +L ++++   +L S PR+ +  R+
Sbjct: 1   MARKSLIQREKKRRNLEQKYHLIRRSSKQE-IRKVTSLSDKWEIHGKLQSPPRNSAPARL 59

Query: 61  RNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW 101
             RC ++GR R   RDF LS   LRE+     +PG  +SSW
Sbjct: 60  HRRCFLTGRPRANIRDFGLSGHILREMVHTCLLPGATRSSW 100


>2vqe_N 30S ribosomal protein S14 type Z; tRNA-binding, rRNA-binding,
           metal-binding, zinc-finger, translation; HET: TM2 PAR;
           2.5A {Thermus thermophilus} SCOP: g.39.1.7 PDB: 1gix_Q*
           1hnw_N* 1hnx_N* 1hnz_N* 1hr0_N 1ibk_N* 1ibl_N* 1ibm_N
           1jgo_Q* 1jgp_Q* 1jgq_Q* 1ml5_Q* 1xmo_N* 1xmq_N* 1xnq_N*
           1xnr_N* 1yl4_Q 2b64_N* 2b9m_N* 2b9o_N* ...
          Length = 61

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 23/46 (50%), Positives = 30/46 (65%)

Query: 56  SRVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW 101
            +VR   RC   GR+R VYR F L R+ LREL   G++PG+ K+SW
Sbjct: 16  FKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW 61


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 10/30 (33%)

Query: 19 KQASKRL--ALKKIVMDKS-------VTLE 39
          KQA K+L  +L K+  D S        T+E
Sbjct: 19 KQALKKLQASL-KLYADDSAPALAIKATME 47


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 24.9 bits (54), Expect = 4.9
 Identities = 8/16 (50%), Positives = 10/16 (62%), Gaps = 3/16 (18%)

Query: 48  LGSLP---RDGSRVRV 60
           LG L    +DG+ VRV
Sbjct: 512 LGVLTHRNKDGTGVRV 527


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.323    0.136    0.377 

Gapped
Lambda     K      H
   0.267   0.0614    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 864,590
Number of extensions: 37407
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 9
Length of query: 101
Length of database: 5,693,230
Length adjustment: 66
Effective length of query: 35
Effective length of database: 4,093,126
Effective search space: 143259410
Effective search space used: 143259410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.3 bits)