BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780248|ref|YP_003064661.1| 30S ribosomal protein S14
[Candidatus Liberibacter asiaticus str. psy62]
         (101 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780248|ref|YP_003064661.1| 30S ribosomal protein S14 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 101

 Score =  196 bits (499), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MAKVSAVERNKRRLRVVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGSRVRV 60
           MAKVSAVERNKRRLRVVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGSRVRV
Sbjct: 1   MAKVSAVERNKRRLRVVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGSRVRV 60

Query: 61  RNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW 101
           RNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW
Sbjct: 61  RNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW 101


>gi|254780238|ref|YP_003064651.1| 30S ribosomal protein S11 [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 129

 Score = 21.6 bits (44), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 51 LPRDGSRVRVRNRCEI-SGRSRGVYRDFRLSRLALRELGG 89
          +P+  SR+R R R  I SGR+  V   F  +R+ + +  G
Sbjct: 1  MPKSPSRIRNRERKNIVSGRAH-VVSTFNNTRITITDPHG 39


>gi|254780859|ref|YP_003065272.1| NADH dehydrogenase subunit G [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 700

 Score = 21.2 bits (43), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 31  VMDKSVTLEERFDAMLQLGSLPR 53
           + + ++   E  DAML +GS PR
Sbjct: 365 IFNPTIQGIEEADAMLIIGSNPR 387


>gi|254780801|ref|YP_003065214.1| hypothetical protein CLIBASIA_03460 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 222

 Score = 20.8 bits (42), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 63  RCEISGRSRGVYRDFRLS 80
            C+++  S G+ RDF L+
Sbjct: 183 ECKLTKLSMGMTRDFELA 200


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.136    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,564
Number of Sequences: 1233
Number of extensions: 1811
Number of successful extensions: 7
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 101
length of database: 328,796
effective HSP length: 61
effective length of query: 40
effective length of database: 253,583
effective search space: 10143320
effective search space used: 10143320
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 32 (16.9 bits)