HHsearch alignment of GI: 254780249 and MMDB domain: 1iq4_A_
>1iq4_A (A:) 50S ribosomal protein L5; rRNA-binding, RNP motif, RNA binding protein; 1.80A {Geobacillus stearothermophilus}
Probab=100.00 E-value=0 Score=454.50 Aligned_cols=179 Identities=56% Similarity=1.023 Sum_probs=177.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
Q ss_conf 61189999999999999982699822286044999974578756537899999998776538961354123764211155
Q gi|254780249|r 7 EPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLR 86 (185)
Q Consensus 7 ~pRLk~~Y~~~i~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fkiR 86 (185)
+|||+.||+++|++||+++++|+|+|++|+|+||+||+|+|++++|++.++.+..+|+.||||+|++++||+|||+||+|
T Consensus 1 m~~l~~~Y~~~i~~dL~~k~~~~n~~~iP~i~KIvin~gvg~~~~~~~~l~~~~~~L~~ItGQkp~~t~akksia~fkir 80 (179)
T 1iq4_A 1 MNRLKEKYLNEVVPALMSKFNYKSIMQVPKIEKIVINMGVGDAVQNPKALDSAVEELTLIAGQRPVVTRAKKSIAGFRLR 80 (179)
T ss_dssp CCHHHHHHHHTHHHHHHHHHCCSSGGGSCCEEEEEEEEECSCSSSCHHHHHHHHHHHHHHHSSCCEEEECCSCSCSSSCC
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHCCEEEEEEEECCCCCHHHCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC
T ss_conf 91789999999999999986899810056145999978887133262789999999998628863156647552222102
Q ss_pred CCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 89862889996034289999999998767752046887110157773143301110068754014688554359998044
Q gi|254780249|r 87 TGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTT 166 (185)
Q Consensus 87 kG~piG~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta 166 (185)
||+|+||+|||||++||+||+||+++||||+|||+|++.++||++|||+||++|+++|||++||++++++||||||||+|
T Consensus 81 kg~~iG~kvTLRg~~my~FL~kli~~vlPrirdf~g~~~~~fd~~gn~sfGi~~~~~FPEi~~d~~~~i~G~~itivt~a 160 (179)
T 1iq4_A 81 QGMPIGAKVTLRGERMYEFLDKLISVSLPRARDFRGVSKKSFDGRGNYTLGIKEQLIFPEIDYDKVNKVRGMDIVIVTTA 160 (179)
T ss_dssp TTCEEEEEEEECHHHHHHHHHHHHHTTGGGSTTCCCBCSSCBCSSSEEEEEESCGGGSTTCCGGGSSCCCCEEEEEEESC
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEECC
T ss_conf 79855899983423299999999997545654302685331178885150501301167744366689887659999466
Q ss_pred CCHHHHHHHHHHHCCCCCC
Q ss_conf 8968999999980898689
Q gi|254780249|r 167 RSDREAKYLLTLFGFPFPK 185 (185)
Q Consensus 167 ~~~~ea~~Lls~~g~Pf~k 185 (185)
++++||+.||++|||||+|
T Consensus 161 ~~~~~~~~lls~~~~Pf~k 179 (179)
T 1iq4_A 161 NTDEEARELLALLGMPFQK 179 (179)
T ss_dssp SSHHHHHHHHHHHTCCBCC
T ss_pred CCHHHHHHHHHHCCCCCCC
T ss_conf 9979999999985998369