HHsearch alignment of GI: 254780249 and MMDB domain: 1mji_A_
>1mji_A (A:) 50S ribosomal protein L5; ribosomal protein - 5S rRNA complex, ribosome; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=0 Score=460.34 Aligned_cols=182 Identities=52% Similarity=0.941 Sum_probs=180.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
Q ss_conf 87561189999999999999982699822286044999974578756537899999998776538961354123764211
Q gi|254780249|r 4 CKYEPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGF 83 (185)
Q Consensus 4 ~~~~pRLk~~Y~~~i~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~f 83 (185)
+.|+|||+.||+++|++||+++++|+|+|++|+|+||+||+|+|+++.|++.++.+..+|+.||||+|++++||+||++|
T Consensus 1 m~~m~~l~~~Y~~~v~~dL~~k~~~~N~~~~Pki~KIvi~~g~g~~~~d~k~l~~~~~~L~~ItGQkp~~t~aKksi~~F 80 (182)
T 1mji_A 1 MPLDVALKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALITGQKPAVTRAKKSISNF 80 (182)
T ss_dssp --CCCHHHHHHHHTHHHHHHHHSCCSSGGGSCCEEEEEEEEECTTTCCCHHHHHHHHHHHHHHHTSCCEEEECCSCCCCS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCHHHCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 99566899999999989999985899940056566999978888200066899999998987538735787615555552
Q ss_pred CCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEE
Q ss_conf 15589862889996034289999999998767752046887110157773143301110068754014688554359998
Q gi|254780249|r 84 KLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISIC 163 (185)
Q Consensus 84 kiRkG~piG~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~ 163 (185)
|+|||+|+||+|||||++||+||+||+++|+||+|||+|++.++||++|||+||++|+++|||++||++++++||||+|+
T Consensus 81 kirkg~piG~kVTLRg~~my~FL~kli~~vlPrirdf~g~~~~sfd~~gn~sfGi~e~~~FPEi~yd~~~~i~G~~Itiv 160 (182)
T 1mji_A 81 KLRKGMPIGLRVTLRRDRXWIFLEKLLNVALPRIRDFRGLNPNSFDGRGNYNLGLREQLIFPEITYDMVDALRGXDIAVV 160 (182)
T ss_dssp SSSCCSEEEEEEEECHHHHHHHHHHHHHTTTTTCSSCCCBCTTCBCSSSEEEEEECSCEECSSCEECCTTTSCCEEEEEE
T ss_pred EECCCCCEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECHHHEEECCCCCCCCCCCCCCCEEEEE
T ss_conf 01179801699994588999999999997630111002355301147714753522504677613266689786269999
Q ss_pred CCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 0448968999999980898689
Q gi|254780249|r 164 TTTRSDREAKYLLTLFGFPFPK 185 (185)
Q Consensus 164 Tta~~~~ea~~Lls~~g~Pf~k 185 (185)
|+|++++|++.||+++||||+|
T Consensus 161 t~a~~~~~~~~ll~~~~~Pf~k 182 (182)
T 1mji_A 161 TTAETDEEARALLELLGFPFRK 182 (182)
T ss_dssp ESCSSHHHHHHHHHHHTCCBCC
T ss_pred ECCCCHHHHHHHHHHCCCCCCC
T ss_conf 3769979999999985997459