HHsearch alignment of GI: 254780249 and MMDB domain: 1vq8_D_
>1vq8_D (D:) 50S ribosomal protein L5P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui}
Probab=100.00 E-value=0 Score=377.42 Aligned_cols=156 Identities=35% Similarity=0.517 Sum_probs=151.1
Q ss_pred HHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 99999982699822286044999974578756537899999998776538961354123764211155898628899960
Q gi|254780249|r 19 REAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLRTGMPIGTKVTLR 98 (185)
Q Consensus 19 ~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fkiRkG~piG~kvTLR 98 (185)
.+||+++++|+|+|++|+|+|||||+|+|++++ .++.+..+|+.||||+|+.++||+||++||+|+|+|+||+||||
T Consensus 1 ~~~L~~k~~~~N~m~vP~i~KIvin~gvg~~~~---~l~~a~~~L~~ITGQkP~~t~AKksi~~fkiRkg~piG~kvTLR 77 (177)
T 1vq8_D 1 MSSESESGGDFHEMREPRIEKVVVHMGIGHGGR---DLANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIGAKVTLR 77 (177)
T ss_dssp ----------CCTTTSCEEEEEEEEEECCC--------CTTHHHHHHHTSSCCEEEECCSCBTTTBCCSSSEEEEEEEEC
T ss_pred CCCHHHHCCCCCCCCCCEEEEEEEECCCCHHHH---HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCEEEEEEEEC
T ss_conf 942112107888856846779999758773356---08999999999729963034443455652021697178999975
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 34289999999998767752046887110157773143301110068754014688554359998044896899999998
Q gi|254780249|r 99 GTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTL 178 (185)
Q Consensus 99 g~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta~~~~ea~~Lls~ 178 (185)
|++||+||+||+++|+||+| +||+.|||+||++|+++|||++||++++++||||||+|+|+++++|+.||++
T Consensus 78 G~~my~FL~kli~~v~p~ir--------~Fd~~gN~sfGi~e~~~FPei~~d~~~~i~G~~itivt~a~~~~~a~~lls~ 149 (177)
T 1vq8_D 78 DEMAEEFLQTALPLAELATS--------QFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGLDVTVNLVRPGYRVAKRDKAS 149 (177)
T ss_dssp THHHHHHHHHHGGGSCCCGG--------GBCSSSCEEEC--------------------CEEEEEEECGGGGGGTSSTTC
T ss_pred CHHHHHHHHHHHCCCCCCCC--------CCCCCEEEEECCHHHEECCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHH
T ss_conf 56599999998442657743--------4489606886725751555342024466403259999568872899999987
Q ss_pred HCCCCCC
Q ss_conf 0898689
Q gi|254780249|r 179 FGFPFPK 185 (185)
Q Consensus 179 ~g~Pf~k 185 (185)
+||||++
T Consensus 150 ~~iPf~~ 156 (177)
T 1vq8_D 150 RSIPTKH 156 (177)
T ss_dssp CCCCGGG
T ss_pred HCCCCCC
T ss_conf 1698546