HHsearch alignment of GI: 254780249 and MMDB domain: 2noq_H_
>2noq_H (H:) 60S ribosomal protein L11-B; IRES RNA, ribosome, translation, internal initiation; 7.30A {Saccharomyces cerevisiae} PDB: 1s1i_J 2zkr_d
Probab=100.00 E-value=0 Score=347.87 Aligned_cols=146 Identities=34% Similarity=0.482 Sum_probs=140.6
Q ss_pred CHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHH
Q ss_conf 82228604499997457875653789999999877653896135412376421115589862889996034289999999
Q gi|254780249|r 30 NVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLRTGMPIGTKVTLRGTNMYDFLDRL 109 (185)
Q Consensus 30 N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fkiRkG~piG~kvTLRg~~my~FL~kl 109 (185)
|+|++|+|+||+||+|+|++++ .++.+..+|+.||||+|++++||+++++||+|||+|+||||||||++||+||+||
T Consensus 1 N~m~vP~i~KIvin~gv~~a~~---~l~~a~~~Le~ITGQkp~~~~aKksi~~fkiRkg~piG~kVTLRg~~my~FL~kl 77 (165)
T 2noq_H 1 NPMRDLKIEKLVLNISVGESGD---RLTRASKVLEQLSGQTPVQSKARYTVRTFGIRRNEKIAVHVTVRGPKAEEILERG 77 (165)
T ss_dssp CTTTSCEEECCCCCCCSSCSSS---SSSCSSSTTSSSSSCCCCCCCCCCCCSSSCCCSSCCCCCCCCCCSSSSSSSSSSS
T ss_pred CCCCCCEEEEEEEECCCCHHHH---HHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHH
T ss_conf 9977747669999778464277---7999999999964997570116655324000356625789886565788999998
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 9987677520468871101577731433011100687540146885543599980448968999999980898689
Q gi|254780249|r 110 INMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTLFGFPFPK 185 (185)
Q Consensus 110 i~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta~~~~ea~~Lls~~g~Pf~k 185 (185)
+++|+||+|| .+||..||++|||+|+. +||++||++++++||||||+|+|++++|++.||+++|+||++
T Consensus 78 i~~v~prir~------~~fd~~gn~sfGi~~~~-e~e~~~d~~~~i~G~~itivt~a~~~~~~~~lls~~~iPf~~ 146 (165)
T 2noq_H 78 LKVKEYQLRD------RNFSATGNFGFGIDEHI-DLGIKYDPSIGIFGMDFYVVMNRPGARVTRRKRCKGTVGNSH 146 (165)
T ss_dssp SSSSCTTCSS------TTSCTTSCCCCCCCCSC-CCSSSSCCCCCCSTTTCCCEEECSSCSTTTSSSSCCCCCSSS
T ss_pred HHCCCCCCCC------CCCCCCCEEEECCHHHC-CCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCC
T ss_conf 7300544323------34168732664446651-455552665655320499997899714877655317788556